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Venues (Conferences, Journals, ...)
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GrowBag graphs for keyword ? (Num. hits/coverage)
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The graphs summarize 23 occurrences of 23 keywords
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Results
Found 43 publication records. Showing 43 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
186 | Reece Hart, Ajay K. Royyuru, Gustavo Stolovitzky, Andrea Califano |
Systematic and automated discovery of patterns in PROSITE families. ![Search on Bibsonomy](Pics/bibsonomy.png) |
RECOMB ![In: Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, RECOMB 2000, Tokyo, Japan, April 8-11, 2000, pp. 147-154, 2000, ACM, 1-58113-186-0. The full citation details ...](Pics/full.jpeg) |
2000 |
DBLP DOI BibTeX RDF |
|
72 | Elena Zheleva, Abdullah N. Arslan |
Fast Motif Search in Protein Sequence Databases. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CSR ![In: Computer Science - Theory and Applications, First International Symposium on Computer Science in Russia, CSR 2006, St. Petersburg, Russia, June 8-12, 2006, Proceedings, pp. 670-681, 2006, Springer, 3-540-34166-8. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
motif search, PROSITE pattern, heuristic, suffix tree, preprocessing, regular expression matching |
72 | Gonzalo Navarro 0001, Mathieu Raffinot |
Fast and simple character classes and bounded gaps pattern matching, with application to protein searching. ![Search on Bibsonomy](Pics/bibsonomy.png) |
RECOMB ![In: Proceedings of the Fifth Annual International Conference on Computational Biology, RECOMB 2001, Montréal, Québec, Canada, April 22-25, 2001, pp. 231-240, 2001, ACM, 1-58113-353-7. The full citation details ...](Pics/full.jpeg) |
2001 |
DBLP DOI BibTeX RDF |
PROSITE, information retrieval, pattern matching, computational biology, bit-parallelism |
49 | Pedro Gabriel Ferreira, Paulo J. Azevedo |
Evaluating Protein Motif Significance Measures: A Case Study on Prosite Patterns. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CIDM ![In: Proceedings of the IEEE Symposium on Computational Intelligence and Data Mining, CIDM 2007, part of the IEEE Symposium Series on Computational Intelligence 2007, Honolulu, Hawaii, USA, 1-5 April 2007, pp. 171-178, 2007, IEEE, 1-4244-0705-2. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
39 | Bill C. H. Chang, Asanga Ratnaweera, Saman K. Halgamuge, Harry C. Watson |
Particle Swarm Optimisation for Protein Motif Discovery. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Genet. Program. Evolvable Mach. ![In: Genet. Program. Evolvable Mach. 5(2), pp. 203-214, 2004. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
protein sequence motif, symbolic data optimisation, motif discovery, particle swarm optimisation |
30 | Quangang Zheng, Haidong Lan, Weiguo Liu |
XPFS: A new parallel PROSITE profile search algorithm on Xeon Phi. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBM ![In: 2014 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2014, Belfast, United Kingdom, November 2-5, 2014, pp. 506-509, 2014, IEEE Computer Society, 978-1-4799-5669-2. The full citation details ...](Pics/full.jpeg) |
2014 |
DBLP DOI BibTeX RDF |
|
30 | Christian J. A. Sigrist, Edouard De Castro, Lorenzo Cerutti, Béatrice A. Cuche, Nicolas Hulo, Alan J. Bridge, Lydie Bougueleret, Ioannis Xenarios |
New and continuing developments at PROSITE. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 41(Database-Issue), pp. 344-347, 2013. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP DOI BibTeX RDF |
|
30 | Thierry Schüpbach, Marco Pagni, Alan J. Bridge, Lydie Bougueleret, Ioannis Xenarios, Lorenzo Cerutti |
pfsearchV3: a code acceleration and heuristic to search PROSITE profiles. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 29(9), pp. 1215-1217, 2013. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP DOI BibTeX RDF |
|
30 | Christian J. A. Sigrist, Lorenzo Cerutti, Edouard De Castro, Petra S. Langendijk-Genevaux, Virginie Bulliard, Amos Bairoch, Nicolas Hulo |
PROSITE, a protein domain database for functional characterization and annotation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 38(Database-Issue), pp. 161-166, 2010. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
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30 | Nicolas Hulo, Amos Bairoch, Virginie Bulliard, Lorenzo Cerutti, Béatrice A. Cuche, Edouard De Castro, Corinne Lachaize, Petra S. Langendijk-Genevaux, Christian J. A. Sigrist |
The 20 years of PROSITE. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 36(Database-Issue), pp. 245-249, 2008. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
30 | Sungroh Yoon, Jessica C. Ebert, Eui-Young Chung, Giovanni De Micheli, Russ B. Altman |
Clustering protein environments for function prediction: finding PROSITE motifs in 3D. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 8(S-4), 2007. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
30 | Edouard De Castro, Christian J. A. Sigrist, Alexandre Gattiker, Virginie Bulliard, Petra S. Langendijk-Genevaux, Elisabeth Gasteiger, Amos Bairoch, Nicolas Hulo |
ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 34(Web-Server-Issue), pp. 362-365, 2006. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
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30 | Nicolas Hulo, Amos Bairoch, Virginie Bulliard, Lorenzo Cerutti, Edouard De Castro, Petra S. Langendijk-Genevaux, Marco Pagni, Christian J. A. Sigrist |
The PROSITE database. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 34(Database-Issue), pp. 227-230, 2006. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
30 | Christian J. A. Sigrist, Edouard De Castro, Petra S. Langendijk-Genevaux, Virginie Le Saux, Amos Bairoch, Nicolas Hulo |
ProRule: a new database containing functional and structural information on PROSITE profiles. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 21(21), pp. 4060-4066, 2005. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
|
30 | Nicolas Hulo, Christian J. A. Sigrist, Virginie Le Saux, Petra S. Langendijk-Genevaux, Lorenza Bordoli, Alexandre Gattiker, Edouard De Castro, Philipp Bucher, Amos Bairoch |
Recent improvements to the PROSITE database. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 32(Database-Issue), pp. 134-137, 2004. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
|
30 | Edward de Oliveira Ribeiro, Gustavo G. Zerlotini, Irving Lopes, Victor Ribeiro, Alba Cristina Magalhaes Alves de Melo, Maria Emília Telles Walter, Marcos Motta |
Rede BIOFOCO: A distributed computation of Interpro Pfam, PROSITE and ProDom for protein annotation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WOB ![In: III Brazilian Workshop on Bioinformatics, October 20-22, 2004, Brasília, Distrito Federal, Brazil, pp. 65-72, 2004. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP BibTeX RDF |
|
30 | Christian J. A. Sigrist, Lorenzo Cerutti, Nicolas Hulo, Alexandre Gattiker, Laurent Falquet, Marco Pagni, Amos Bairoch, Philipp Bucher |
PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 3(3), pp. 265-274, 2002. The full citation details ...](Pics/full.jpeg) |
2002 |
DBLP DOI BibTeX RDF |
|
30 | Laurent Falquet, Marco Pagni, Philipp Bucher, Nicolas Hulo, Christian J. A. Sigrist, Kay Hofmann, Amos Bairoch |
The PROSITE database, its status in 2002. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 30(1), pp. 235-238, 2002. The full citation details ...](Pics/full.jpeg) |
2002 |
DBLP DOI BibTeX RDF |
|
30 | Jean-Paul Comet, Jacques Henry |
Pairwise Sequence Alignment using a PROSITE Pattern-derived Similarity Score. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Comput. Chem. ![In: Comput. Chem. 26(5), pp. 421-436, 2002. The full citation details ...](Pics/full.jpeg) |
2002 |
DBLP DOI BibTeX RDF |
|
30 | Xiangyun Wang, Diane Schroeder, Drena Dobbs, Vasant G. Honavar |
Data-Driven Discovery of Protein Function Classifiers: Decision Trees Based on MEME Motifs outperform PROSITE Patterns and Profiles on Peptidase Families. ![Search on Bibsonomy](Pics/bibsonomy.png) |
JCIS ![In: Proceedings of the 6th Joint Conference on Information Science, March 8-13, 2002, Research Triangle Park, North Carolina, USA, pp. 1193-1199, 2002, JCIS / Association for Intelligent Machinery, Inc., 0-9707890-1-7. The full citation details ...](Pics/full.jpeg) |
2002 |
DBLP BibTeX RDF |
|
30 | Kim Laurio, Fredrik Linåker, Ajit Narayanan |
Recognizing PROSITE Patterns with Cellular Automata. ![Search on Bibsonomy](Pics/bibsonomy.png) |
JCIS ![In: Proceedings of the 6th Joint Conference on Information Science, March 8-13, 2002, Research Triangle Park, North Carolina, USA, pp. 1174-1179, 2002, JCIS / Association for Intelligent Machinery, Inc., 0-9707890-1-7. The full citation details ...](Pics/full.jpeg) |
2002 |
DBLP BibTeX RDF |
|
30 | Kay Hofmann, Philipp Bucher, Laurent Falquet, Amos Bairoch |
The PROSITE database, its status in 1999. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 27(1), pp. 215-219, 1999. The full citation details ...](Pics/full.jpeg) |
1999 |
DBLP DOI BibTeX RDF |
|
30 | Amos Bairoch, Philipp Bucher, Kay Hofmann |
The PROSITE database, its status in 1997. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 25(1), pp. 217-221, 1997. The full citation details ...](Pics/full.jpeg) |
1997 |
DBLP DOI BibTeX RDF |
|
30 | Amos Bairoch, Philipp Bucher, Kay Hofmann |
The PROSITE database, its status in 1995. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 24(1), pp. 189-196, 1996. The full citation details ...](Pics/full.jpeg) |
1996 |
DBLP DOI BibTeX RDF |
|
30 | Cathy H. Wu, Sheng Zhao, Hsi-Lien Chen |
A Protein Class Database Organized with ProSite Protein Groups and PIR Superfamilies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Biol. ![In: J. Comput. Biol. 3(4), pp. 547-561, 1996. The full citation details ...](Pics/full.jpeg) |
1996 |
DBLP DOI BibTeX RDF |
|
30 | Amos Bairoch |
The PROSITE dictionary of sites and patterns in proteins, its current status. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 21(13), pp. 3097-3103, 1993. The full citation details ...](Pics/full.jpeg) |
1993 |
DBLP DOI BibTeX RDF |
|
30 | Peter R. Sibbald, Hubert Sommerfeldt, P. Argos |
Automated protein sequence pattern handling and PROSITE searching. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Comput. Appl. Biosci. ![In: Comput. Appl. Biosci. 7(4), pp. 535-536, 1991. The full citation details ...](Pics/full.jpeg) |
1991 |
DBLP DOI BibTeX RDF |
|
20 | Yanni Sun, Jeremy Buhler |
Designing Patterns and Profiles for Faster HMM Search. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE ACM Trans. Comput. Biol. Bioinform. ![In: IEEE ACM Trans. Comput. Biol. Bioinform. 6(2), pp. 232-243, 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
bioinformatics databases, sequence similarity search, hidden Markov models, Biology and genetics |
20 | Tobias Marschall, Sven Rahmann |
Probabilistic Arithmetic Automata and Their Application to Pattern Matching Statistics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CPM ![In: Combinatorial Pattern Matching, 19th Annual Symposium, CPM 2008, Pisa, Italy, June 18-20, 2008, Proceedings, pp. 95-106, 2008, Springer, 978-3-540-69066-5. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
20 | Greg Paperin |
Evolving sequence patterns for prediction of sub-cellular locations of eukaryotic proteins. ![Search on Bibsonomy](Pics/bibsonomy.png) |
GECCO ![In: Genetic and Evolutionary Computation Conference, GECCO 2008, Proceedings, Atlanta, GA, USA, July 12-16, 2008, pp. 1135-1136, 2008, ACM, 978-1-60558-130-9. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
classifier learning, protein localisation, genetic algorithm |
20 | Pratibha Mehta Luthra, Sandeep Kumar Barodia, Amresh Prakash, Ramraghubir |
cDNA-Derived Amino Acid Sequence from Rat Brain A2aR Possesses Conserved Motifs PMNYM of TM 5 Domain, Which May Be Involved in Dimerization of A2aR. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PRIB ![In: Pattern Recognition in Bioinformatics, Second IAPR International Workshop, PRIB 2007, Singapore, October 1-2, 2007, Proceedings, pp. 41-50, 2007, Springer, 978-3-540-75285-1. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
Adenosine A2a receptor, cDNA, GPCRs, RT-PCR, TM 5 |
20 | Peera Liewlom, Thanawin Rakthanmanon, Kitsana Waiyamai |
Prediction of Enzyme Class by Using Reactive Motifs Generated from Binding and Catalytic Sites. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ADMA ![In: Advanced Data Mining and Applications, Third International Conference, ADMA 2007, Harbin, China, August 6-8, 2007, Proceedings, pp. 442-453, 2007, Springer, 978-3-540-73870-1. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
mutation control, sequence motif, reactive motif, enzyme function prediction, catalytic site, amino acid substitution group, binding site |
20 | Bouchra Bouqata, Christopher D. Carothers, Boleslaw K. Szymanski, Mohammed Javeed Zaki |
VOGUE: A Novel Variable Order-Gap State Machine for Modeling Sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PKDD ![In: Knowledge Discovery in Databases: PKDD 2006, 10th European Conference on Principles and Practice of Knowledge Discovery in Databases, Berlin, Germany, September 18-22, 2006, Proceedings, pp. 42-54, 2006, Springer, 3-540-45374-1. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
20 | Luiz Henrique de Campos Merschmann, Alexandre Plastino 0001 |
A Bayesian approach for protein classification. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SAC ![In: Proceedings of the 2006 ACM Symposium on Applied Computing (SAC), Dijon, France, April 23-27, 2006, pp. 200-201, 2006, ACM, 1-59593-108-2. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
data mining, bayesian classifier, protein classification |
20 | Yun Sheng Chung, Chin Lung Lu, Chuan Yi Tang |
Efficient Algorithms for Regular Expression Constrained Sequence Alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CPM ![In: Combinatorial Pattern Matching, 17th Annual Symposium, CPM 2006, Barcelona, Spain, July 5-7, 2006, Proceedings, pp. 389-400, 2006, Springer, 3-540-35455-7. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
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20 | Luiz Henrique de Campos Merschmann, Alexandre Plastino 0001 |
HiSP: A Probabilistic Data Mining Technique for Protein Classification. ![Search on Bibsonomy](Pics/bibsonomy.png) |
International Conference on Computational Science (2) ![In: Computational Science - ICCS 2006, 6th International Conference, Reading, UK, May 28-31, 2006, Proceedings, Part II, pp. 863-870, 2006, Springer, 3-540-34381-4. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
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20 | Yen Kaow Ng, Hirotaka Ono 0001, Takeshi Shinohara |
Measuring Over-Generalization in the Minimal Multiple Generalizations of Biosequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Discovery Science ![In: Discovery Science, 8th International Conference, DS 2005, Singapore, October 8-11, 2005, Proceedings, pp. 176-188, 2005, Springer, 3-540-29230-6. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
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20 | Mehmet M. Dalkilic |
An Architecture and Application for Integrating Curation Data at the Residue Level for Proteins. ![Search on Bibsonomy](Pics/bibsonomy.png) |
DILS ![In: Data Integration in the Life Sciences, Second InternationalWorkshop, DILS 2005, San Diego, CA, USA, July 20-22, 2005, Proceedings, pp. 335-338, 2005, Springer, 3-540-27967-9. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
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20 | Rolv Seehuus, Amund Tveit, Ole Edsberg |
Discovering biological motifs with genetic programming. ![Search on Bibsonomy](Pics/bibsonomy.png) |
GECCO ![In: Genetic and Evolutionary Computation Conference, GECCO 2005, Proceedings, Washington DC, USA, June 25-29, 2005, pp. 401-408, 2005, ACM, 1-59593-010-8. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
protein motifs, genetic programming, representations |
20 | Zhiping Wang, Mehmet M. Dalkilic, Sun Kim |
Guiding motif discovery by iterative pattern refinement. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SAC ![In: Proceedings of the 2004 ACM Symposium on Applied Computing (SAC), Nicosia, Cyprus, March 14-17, 2004, pp. 162-166, 2004, ACM, 1-58113-812-1. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
framework, bioinformatics, pattern, Motif |
20 | Pierre Nicodème, Bruno Salvy, Philippe Flajolet |
Motif Statistics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ESA ![In: Algorithms - ESA '99, 7th Annual European Symposium, Prague, Czech Republic, July 16-18, 1999, Proceedings, pp. 194-211, 1999, Springer, 3-540-66251-0. The full citation details ...](Pics/full.jpeg) |
1999 |
DBLP DOI BibTeX RDF |
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20 | Erika Tateishi, Osamu Maruyama, Satoru Miyano |
Extracting Best Consensus Motifs from Positive and Negative Examples. ![Search on Bibsonomy](Pics/bibsonomy.png) |
STACS ![In: STACS 96, 13th Annual Symposium on Theoretical Aspects of Computer Science, Grenoble, France, February 22-24, 1996, Proceedings, pp. 219-230, 1996, Springer, 3-540-60922-9. The full citation details ...](Pics/full.jpeg) |
1996 |
DBLP DOI BibTeX RDF |
algorithms and computational complexity, genome informatics |
20 | Satoru Miyano |
Algorithmic Problems Arising from Genome Informatics (Abstract). ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISAAC ![In: Algorithms and Computation, 6th International Symposium, ISAAC '95, Cairns, Australia, December 4-6, 1995, Proceedings, pp. 1, 1995, Springer, 3-540-60573-8. The full citation details ...](Pics/full.jpeg) |
1995 |
DBLP DOI BibTeX RDF |
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