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Searching for PSSM with no syntactic query expansion in all metadata.

Publication years (Num. hits)
1999-2007 (21) 2008-2011 (15) 2012-2019 (17) 2020-2023 (18)
Publication types (Num. hits)
article(38) inproceedings(33)
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Found 71 publication records. Showing 71 according to the selection in the facets
Hits ? Authors Title Venue Year Link Author keywords
128Peter Clote Performance Comparison of Generalized PSSM in Signal Peptide Cleavage Site. Search on Bibsonomy BIBE The full citation details ... 2003 DBLP  DOI  BibTeX  RDF
95Huiyun Yang, Ouyan Shi, Xin Tian 0004 Combining Physico-chemical Properties with PSSM for Protein Secondary Structure Prediction Using BP Neural Network. Search on Bibsonomy BMEI (1) The full citation details ... 2008 DBLP  DOI  BibTeX  RDF hydrophobicity, isoelectric point, PSSM, prediction, BP neural network, protein secondary structure
90Wei Zhong, Gulsah Altun, Xinmin Tian, Robert W. Harrison, Phang C. Tai, Yi Pan 0001 Parallel protein secondary structure prediction schemes using Pthread and OpenMP over hyper-threading technology. Search on Bibsonomy J. Supercomput. The full citation details ... 2007 DBLP  DOI  BibTeX  RDF DBNN (Denoeux Belief Neural Network), MPI (Message Passing Interface), Hyper-threading, BLOSUM62 matrix, Hydrophobicity matrix, PSSM (Position Specific Scoring Matrix), Neural networks, Parallel architecture, OpenMP, Speedup, Pthread, Protein secondary structure prediction
82Eleazar Eskin From profiles to patterns and back again: a branch and bound algorithm for finding near optimal motif profiles. Search on Bibsonomy RECOMB The full citation details ... 2004 DBLP  DOI  BibTeX  RDF patterns, profiles, transcription factor binding sites, motif-finding
66E. R. Naganathan, P. Eugene Xavier Architecting autonomic computing systems through Probabilistic Software Stability Model (PSSM). Search on Bibsonomy ICIS The full citation details ... 2009 DBLP  DOI  BibTeX  RDF business object (BO), enduring business theme (EBT), industry object (IO), software engineering, requirements, autonomic computing, function points, software stability
54Christopher J. Friedline, Xueping Zhang, Zendra E. Zehner, Zhongming Zhao FindSUMO: A PSSM-Based Method for Sumoylation Site Prediction. Search on Bibsonomy ICIC (2) The full citation details ... 2008 DBLP  DOI  BibTeX  RDF SUMO, sumoylation, PSSM, position-specific scoring matrix
51Qin Wang, Boyuan Wang, Zhenlei Xu, Jiaxiang Wu 0001, Peilin Zhao, Zhen Li 0026, Sheng Wang, Junzhou Huang, Shuguang Cui PSSM-Distil: Protein Secondary Structure Prediction (PSSP) on Low-Quality PSSM by Knowledge Distillation with Contrastive Learning. Search on Bibsonomy AAAI The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
49Siddharth Singh, Krishnan Hajela, Ashwini Kumar Ramani SVM-BetaPred: Prediction of Right-Handed ß-Helix Fold from Protein Sequence Using SVM. Search on Bibsonomy PRIB The full citation details ... 2007 DBLP  DOI  BibTeX  RDF ß-helix fold, ß-sheet stacking, pectate lyase, fold recognition, PSSM, Support Vector Machines, SVM, secondary structure
46Yu-Yen Ou, Shu-An Chen Using Efficient RBF Networks to Classify Transport Proteins Based on PSSM Profiles and Biochemical Properties. Search on Bibsonomy IWANN (1) The full citation details ... 2009 DBLP  DOI  BibTeX  RDF
46Hae-Jin Hu, Phang C. Tai, Robert W. Harrison, Jieyue He, Yi Pan 0001 Protein Secondary Structure Prediction Using Support Vector Machine With a PSSM Profile and an Advanced Tertiary Classifier. Search on Bibsonomy CSB Workshops The full citation details ... 2005 DBLP  DOI  BibTeX  RDF
41Tatsuya Akutsu, Hideo Bannai, Satoru Miyano, Sascha Ott On the Complexity of Deriving Position Specific Score Matrices from Examples. Search on Bibsonomy CPM The full citation details ... 2002 DBLP  DOI  BibTeX  RDF
28Wei Li, Yuehui Chen, Yaou Zhao Multi-layer Ensemble Classifiers on Protein Secondary Structure Prediction. Search on Bibsonomy ICIC (1) The full citation details ... 2008 DBLP  DOI  BibTeX  RDF PSSM, Protein secondary structure prediction, Ensemble classification
26Zhihua Du, Tianyou Huang, Vladimir N. Uversky, Jianqiang Li 0001 Predicting TF Proteins by Incorporating Evolution Information Through PSSM. Search on Bibsonomy IEEE ACM Trans. Comput. Biol. Bioinform. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
26Xin Liu, Yaping Lu, Liang Wang, Wei Geng, Xinyi Shi, Xiao Zhang RF-PSSM: A Combination of Rotation Forest Algorithm and Position-Specific Scoring Matrix for Improved Prediction of Protein-Protein Interactions Between Hepatitis C Virus and Human. Search on Bibsonomy Big Data Min. Anal. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
26Márton Elekes 0001, Vince Molnár, Zoltán Micskei To Do or Not to Do: Semantics and Patterns for Do Activities in UML PSSM State Machines. Search on Bibsonomy CoRR The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
26Márton Elekes 0001, Vince Molnár, Zoltán Micskei Assessing the specification of modelling language semantics: a study on UML PSSM. Search on Bibsonomy Softw. Qual. J. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
26Quang-Hien Kha, Quang-Thai Ho, Nguyen-Quoc-Khanh Le Identifying SNARE Proteins Using an Alignment-Free Method Based on Multiscan Convolutional Neural Network and PSSM Profiles. Search on Bibsonomy J. Chem. Inf. Model. The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
26Yanhua Xu 0001, Dominik Wojtczak Predicting Influenza A Viral Host Using PSSM and Word Embeddings. Search on Bibsonomy CoRR The full citation details ... 2022 DBLP  BibTeX  RDF
26Yu He, Shunfang Wang SE-BLTCNN: A channel attention adapted deep learning model based on PSSM for membrane protein classification. Search on Bibsonomy Comput. Biol. Chem. The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
26Nguyen-Quoc-Khanh Le, Binh P. Nguyen Prediction of FMN Binding Sites in Electron Transport Chains Based on 2-D CNN and PSSM Profiles. Search on Bibsonomy IEEE ACM Trans. Comput. Biol. Bioinform. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
26Chenchen Ding, Haitao Han, Qianyue Li, Xiaoxia Yang, Taigang Liu iT3SE-PX: Identification of Bacterial Type III Secreted Effectors Using PSSM Profiles and XGBoost Feature Selection. Search on Bibsonomy Comput. Math. Methods Medicine The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
26Heena Farooq Bhat, M. Arif Wani Novel PSSM-Based Approaches for Gene Identification Using Support Vector Machine. Search on Bibsonomy J. Inf. Technol. Res. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
26Zheng Wang 0065, Yang Li, Li-Ping Li, Zhu-Hong You, Wenzhun Huang Self-Interacting Proteins Prediction from PSSM Based on Evolutionary Information. Search on Bibsonomy Sci. Program. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
26Yuzhi Guo, Jiaxiang Wu 0001, Hehuan Ma, Sheng Wang, Junzhou Huang EPTool: A New Enhancing PSSM Tool for Protein Secondary Structure Prediction. Search on Bibsonomy J. Comput. Biol. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
26Shougang Yuan, Yan Solihin, Huiyang Zhou PSSM: achieving secure memory for GPUs with partitioned and sectored security metadata. Search on Bibsonomy ICS The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
26Márton Elekes 0001, Zoltán Micskei Towards Testing the UML PSSM Test Suite. Search on Bibsonomy LADC The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
26Yanhua Xu 0001, Dominik Wojtczak Predicting Influenza A Viral Host Using PSSM and Word Embeddings. Search on Bibsonomy CIBCB The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
26Yuzhi Guo, Jiaxiang Wu 0001, Hehuan Ma, Sheng Wang, Junzhou Huang Bagging MSA Learning: Enhancing Low-Quality PSSM with Deep Learning for Accurate Protein Structure Property Prediction. Search on Bibsonomy RECOMB The full citation details ... 2020 DBLP  DOI  BibTeX  RDF
26Haoyi Fu, Zicheng Cao, Mingyuan Li, Xinnan Xia, Shunfang Wang Prediction of Anuran Antimicrobial Peptides Using AdaBoost and Improved PSSM Profiles. Search on Bibsonomy BIBE The full citation details ... 2020 DBLP  DOI  BibTeX  RDF
26Hui-Juan Zhu, Zhu-Hong You, Wei-Lei Shi, Shoukun Xu, Tong-Hai Jiang, Li-Hua Zhuang Improved Prediction of Protein-Protein Interactions Using Descriptors Derived From PSSM via Gray Level Co-Occurrence Matrix. Search on Bibsonomy IEEE Access The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
26Xin Gao, Donghua Wang, Jun Zhang, Qing Liao 0001, Bin Liu 0014 iRBP-Motif-PSSM: Identification of RNA-Binding Proteins Based on Collaborative Learning. Search on Bibsonomy IEEE Access The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
26Shunfang Wang, Mingyuan Li, Lei Guo, Zicheng Cao, Yu Fei Efficient utilization on PSSM combining with recurrent neural network for membrane protein types prediction. Search on Bibsonomy Comput. Biol. Chem. The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
26Fang Yuan, Gan Liu, Xiwen Yang, Shunfang Wang, Xueren Wang Prediction of oxidoreductase subfamily classes based on RFE-SND-CC-PSSM and machine learning methods. Search on Bibsonomy J. Bioinform. Comput. Biol. The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
26Nguyen-Quoc-Khanh Le, Tuan-Tu Huynh, Edward Kien Yee Yapp, Hui-Yuan Yeh Identification of clathrin proteins by incorporating hyperparameter optimization in deep learning and PSSM profiles. Search on Bibsonomy Comput. Methods Programs Biomed. The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
26Runtao Yang, Chengjin Zhang, Lina Zhang PSSM-PROREP: A Flexible Web Server for Generating Various Position Specific Score Matrix-derived Protein Representations. Search on Bibsonomy ICIA The full citation details ... 2018 DBLP  DOI  BibTeX  RDF
26Jiyun Zhou, Qin Lu 0001, Ruifeng Xu, Yulan He 0001, Hongpeng Wang EL_PSSM-RT: DNA-binding residue prediction by integrating ensemble learning with PSSM Relation Transformation. Search on Bibsonomy BMC Bioinform. The full citation details ... 2017 DBLP  DOI  BibTeX  RDF
26Jiawei Wang 0002, Bingjiao Yang, Jerico Nico De Leon Revote, André Leier, Tatiana T. Marquez-Lago, Geoffrey I. Webb, Jiangning Song, Kuo-Chen Chou, Trevor Lithgow POSSUM: a bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles. Search on Bibsonomy Bioinform. The full citation details ... 2017 DBLP  DOI  BibTeX  RDF
26Yehong Chen, Jinyong Cheng, Yihui Liu, Pil Seong Park A Novel Approach of Protein Secondary Structure Prediction by SVM Using PSSM Combined by Sequence Features. Search on Bibsonomy IntelliSys (1) The full citation details ... 2016 DBLP  DOI  BibTeX  RDF
26Yunyun Liang, Sanyang Liu, Shengli Zhang Prediction of Protein Structural Classes for Low-Similarity Sequences Based on Consensus Sequence and Segmented PSSM. Search on Bibsonomy Comput. Math. Methods Medicine The full citation details ... 2015 DBLP  DOI  BibTeX  RDF
26Zhisen Wei, Jing-Yu Yang 0001, Dong-Jun Yu Predicting Protein-Protein Interactions with Weighted PSSM Histogram and Random Forests. Search on Bibsonomy IScIDE (2) The full citation details ... 2015 DBLP  DOI  BibTeX  RDF
26Chao Huang, Jingqi Yuan Using radial basis function on the general form of Chou's pseudo amino acid composition and PSSM to predict subcellular locations of proteins with both single and multiple sites. Search on Bibsonomy Biosyst. The full citation details ... 2013 DBLP  DOI  BibTeX  RDF
26Lingyun Zou, Chonghan Nan, Fuquan Hu Accurate prediction of bacterial type IV secreted effectors using amino acid composition and PSSM profiles. Search on Bibsonomy Bioinform. The full citation details ... 2013 DBLP  DOI  BibTeX  RDF
26Abdollah Dehzangi, Kuldip K. Paliwal, James G. Lyons, Alok Sharma, Abdul Sattar 0001 Exploring Potential Discriminatory Information Embedded in PSSM to Enhance Protein Structural Class Prediction Accuracy. Search on Bibsonomy PRIB The full citation details ... 2013 DBLP  DOI  BibTeX  RDF
26Yin-Fu Huang, Shuying Chen Protein secondary structure prediction based on physicochemical features and PSSM by SVM. Search on Bibsonomy CIBCB The full citation details ... 2013 DBLP  DOI  BibTeX  RDF
26Xia Wang, Gang Mi, Cuicui Wang, Yongqing Zhang, Juan Li, Yanzhi Guo, Xuemei Pu, Menglong Li Prediction of flavin mono-nucleotide binding sites using modified PSSM profile and ensemble support vector machine. Search on Bibsonomy Comput. Biol. Medicine The full citation details ... 2012 DBLP  DOI  BibTeX  RDF
26Wen-Jun Shen, Hau-San Wong OWA-PSSM - A position specific scoring matrix based method integrated with OWA weights for HLA-DR peptide binding prediction. Search on Bibsonomy BIBM The full citation details ... 2012 DBLP  DOI  BibTeX  RDF
26Shu-An Chen, Yu-Yen Ou, Tzong-Yi Lee, M. Michael Gromiha Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties. Search on Bibsonomy Bioinform. The full citation details ... 2011 DBLP  DOI  BibTeX  RDF
26Kaveh Kavousi, Behzad Moshiri, Mehdi Sadeghi, Babak Nadjar Araabi, Ali Akbar Moosavi-Movahedi A protein fold classifier formed by fusing different modes of pseudo amino acid composition via PSSM. Search on Bibsonomy Comput. Biol. Chem. The full citation details ... 2011 DBLP  DOI  BibTeX  RDF
26Khader Shameer, Paramasivam Nagarajan, Kumar Gaurav, Ramanathan Sowdhamini 3PFDB - A database of Best Representative PSSM Profiles (BRPs) of Protein Families generated using a novel data mining approach. Search on Bibsonomy BioData Min. The full citation details ... 2009 DBLP  DOI  BibTeX  RDF
26P. Eugene Xavier, E. R. Naganathan Productivity improvement in software projects using 2-dimensional probabilistic software stability model (PSSM). Search on Bibsonomy ACM SIGSOFT Softw. Eng. Notes The full citation details ... 2009 DBLP  DOI  BibTeX  RDF
26Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Search on Bibsonomy Bioinform. The full citation details ... 2009 DBLP  DOI  BibTeX  RDF
26Eric Y. T. Juan, W. J. Li, J. H. Jhang, C. H. Chiu Predicting Protein Subcellular Localizations for Gram-Negative Bacteria Using DP-PSSM and Support Vector Machines. Search on Bibsonomy CISIS The full citation details ... 2009 DBLP  DOI  BibTeX  RDF
26Darby Tien-Hao Chang, Hsuan-Yu Huang, Yu-Tang Syu, Chih-Peng Wu Real value prediction of protein solvent accessibility using enhanced PSSM features. Search on Bibsonomy BMC Bioinform. The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
26Ruchi Verma, Ajit Tiwari, Sukhwinder Kaur, Grish C. Varshney, Gajendra P. S. Raghava Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles. Search on Bibsonomy BMC Bioinform. The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
26Yu-Yen Ou, M. Michael Gromiha, Shu-An Chen, Makiko Suwa TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles. Search on Bibsonomy Comput. Biol. Chem. The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
26Piyushkumar A. Mundra, Madhan Kumar, K. Krishna Kumar, Valadi K. Jayaraman, Bhaskar D. Kulkarni Using pseudo amino acid composition to predict protein subnuclear localization: Approached with PSSM. Search on Bibsonomy Pattern Recognit. Lett. The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
26Shinn-Ying Ho, Fu-Chieh Yu, Chia-Yun Chang, Hui-Ling Huang Design of accurate predictors for DNA-binding sites in proteins using hybrid SVM-PSSM method. Search on Bibsonomy Biosyst. The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
26Yu-Yen Ou, Shu-An Chen, Chung-Lu Shao, Hao-Geng Hung Using Efficient RBF Network to Identify Interface Residues Based on PSSM Profiles and Biochemical Properties. Search on Bibsonomy PRIB The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
26Chung-Tsai Su, Chien-Yu Chen 0001, Yu-Yen Ou Protein disorder prediction by condensed PSSM considering propensity for order or disorder. Search on Bibsonomy BMC Bioinform. The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
26Ketil Malde, Robert Giegerich Calculating PSSM probabilities with lazy dynamic programming. Search on Bibsonomy J. Funct. Program. The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
26Shandar Ahmad, Akinori Sarai PSSM-based prediction of DNA binding sites in proteins. Search on Bibsonomy BMC Bioinform. The full citation details ... 2005 DBLP  DOI  BibTeX  RDF
26Mauro Delorenzi, Terence P. Speed An HMM model for coiled-coil domains and a comparison with PSSM-based predictions. Search on Bibsonomy Bioinform. The full citation details ... 2002 DBLP  DOI  BibTeX  RDF
26Lawrence A. Kelley, Robert M. MacCallum, Michael J. E. Sternberg Recognition of remote protein homologies using three-dimensional information to generate a position specific scoring matrix in the program 3D-PSSM. Search on Bibsonomy RECOMB The full citation details ... 1999 DBLP  DOI  BibTeX  RDF
20Paul D. Yoo, Yung Shwen Ho, Bing Bing Zhou, Albert Y. Zomaya Adaptive Locality-Effective Kernel Machine for protein phosphorylation site prediction. Search on Bibsonomy IPDPS The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
20Eilon Sharon, Eran Segal A Feature-Based Approach to Modeling Protein-DNA Interactions. Search on Bibsonomy RECOMB The full citation details ... 2007 DBLP  DOI  BibTeX  RDF DNA sequence motifs, motif finder, probabilistic graphical models, Markov networks, transcription factor binding sites
20Siddharth Singh, Krishnan Hajela, Ashwini Kumar Ramani RßHpred: Prediction of Right-Handed ß-Helix Fold from Protein Sequence Using SVM and Protein Threading. Search on Bibsonomy CIT The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
20Chung-Tsai Su, Tong-Ming Hsu, Chien-Yu Chen 0001, Yu-Yen Ou, Yen-Jen Oyang Enhancing Protein Disorder Detection by Refined Secondary Structure Prediction. Search on Bibsonomy BIRD The full citation details ... 2007 DBLP  DOI  BibTeX  RDF protein disorder prediction, Radial Basis Function Network, secondary structure
20Jyh-Yeong Chang, Jia-Jie Shyu, Yi-Xiang Shi Fuzzy K-Nearest Neighbor Classifier to Predict Protein Solvent Accessibility. Search on Bibsonomy ICONIP (2) The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
20Kuan Yang, Youping Deng, Chaoyang Zhang, Mohamed O. Elasri Identification of New Members of Hydrophobin Family Using Primary Structure Analysis. Search on Bibsonomy IMSCCS (1) The full citation details ... 2006 DBLP  DOI  BibTeX  RDF Hydrophobin, Batch BLAST, Motif finding, MEME
20Manuel Middendorf, Anshul Kundaje, Mihir Shah, Yoav Freund, Chris Wiggins 0001, Christina S. Leslie Motif Discovery Through Predictive Modeling of Gene Regulation. Search on Bibsonomy RECOMB The full citation details ... 2005 DBLP  DOI  BibTeX  RDF
20Shing-Hwang Doong, Chi Y. Yeh Secondary Structure Prediction Using SVM and Clustering. Search on Bibsonomy HIS The full citation details ... 2004 DBLP  DOI  BibTeX  RDF
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