|
|
Venues (Conferences, Journals, ...)
|
|
GrowBag graphs for keyword ? (Num. hits/coverage)
Group by:
The graphs summarize 29 occurrences of 25 keywords
|
|
|
Results
Found 71 publication records. Showing 71 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
128 | Peter Clote |
Performance Comparison of Generalized PSSM in Signal Peptide Cleavage Site. |
BIBE |
2003 |
DBLP DOI BibTeX RDF |
|
95 | Huiyun Yang, Ouyan Shi, Xin Tian 0004 |
Combining Physico-chemical Properties with PSSM for Protein Secondary Structure Prediction Using BP Neural Network. |
BMEI (1) |
2008 |
DBLP DOI BibTeX RDF |
hydrophobicity, isoelectric point, PSSM, prediction, BP neural network, protein secondary structure |
90 | Wei Zhong, Gulsah Altun, Xinmin Tian, Robert W. Harrison, Phang C. Tai, Yi Pan 0001 |
Parallel protein secondary structure prediction schemes using Pthread and OpenMP over hyper-threading technology. |
J. Supercomput. |
2007 |
DBLP DOI BibTeX RDF |
DBNN (Denoeux Belief Neural Network), MPI (Message Passing Interface), Hyper-threading, BLOSUM62 matrix, Hydrophobicity matrix, PSSM (Position Specific Scoring Matrix), Neural networks, Parallel architecture, OpenMP, Speedup, Pthread, Protein secondary structure prediction |
82 | Eleazar Eskin |
From profiles to patterns and back again: a branch and bound algorithm for finding near optimal motif profiles. |
RECOMB |
2004 |
DBLP DOI BibTeX RDF |
patterns, profiles, transcription factor binding sites, motif-finding |
66 | E. R. Naganathan, P. Eugene Xavier |
Architecting autonomic computing systems through Probabilistic Software Stability Model (PSSM). |
ICIS |
2009 |
DBLP DOI BibTeX RDF |
business object (BO), enduring business theme (EBT), industry object (IO), software engineering, requirements, autonomic computing, function points, software stability |
54 | Christopher J. Friedline, Xueping Zhang, Zendra E. Zehner, Zhongming Zhao |
FindSUMO: A PSSM-Based Method for Sumoylation Site Prediction. |
ICIC (2) |
2008 |
DBLP DOI BibTeX RDF |
SUMO, sumoylation, PSSM, position-specific scoring matrix |
51 | Qin Wang, Boyuan Wang, Zhenlei Xu, Jiaxiang Wu 0001, Peilin Zhao, Zhen Li 0026, Sheng Wang, Junzhou Huang, Shuguang Cui |
PSSM-Distil: Protein Secondary Structure Prediction (PSSP) on Low-Quality PSSM by Knowledge Distillation with Contrastive Learning. |
AAAI |
2021 |
DBLP DOI BibTeX RDF |
|
49 | Siddharth Singh, Krishnan Hajela, Ashwini Kumar Ramani |
SVM-BetaPred: Prediction of Right-Handed ß-Helix Fold from Protein Sequence Using SVM. |
PRIB |
2007 |
DBLP DOI BibTeX RDF |
ß-helix fold, ß-sheet stacking, pectate lyase, fold recognition, PSSM, Support Vector Machines, SVM, secondary structure |
46 | Yu-Yen Ou, Shu-An Chen |
Using Efficient RBF Networks to Classify Transport Proteins Based on PSSM Profiles and Biochemical Properties. |
IWANN (1) |
2009 |
DBLP DOI BibTeX RDF |
|
46 | Hae-Jin Hu, Phang C. Tai, Robert W. Harrison, Jieyue He, Yi Pan 0001 |
Protein Secondary Structure Prediction Using Support Vector Machine With a PSSM Profile and an Advanced Tertiary Classifier. |
CSB Workshops |
2005 |
DBLP DOI BibTeX RDF |
|
41 | Tatsuya Akutsu, Hideo Bannai, Satoru Miyano, Sascha Ott |
On the Complexity of Deriving Position Specific Score Matrices from Examples. |
CPM |
2002 |
DBLP DOI BibTeX RDF |
|
28 | Wei Li, Yuehui Chen, Yaou Zhao |
Multi-layer Ensemble Classifiers on Protein Secondary Structure Prediction. |
ICIC (1) |
2008 |
DBLP DOI BibTeX RDF |
PSSM, Protein secondary structure prediction, Ensemble classification |
26 | Zhihua Du, Tianyou Huang, Vladimir N. Uversky, Jianqiang Li 0001 |
Predicting TF Proteins by Incorporating Evolution Information Through PSSM. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
26 | Xin Liu, Yaping Lu, Liang Wang, Wei Geng, Xinyi Shi, Xiao Zhang |
RF-PSSM: A Combination of Rotation Forest Algorithm and Position-Specific Scoring Matrix for Improved Prediction of Protein-Protein Interactions Between Hepatitis C Virus and Human. |
Big Data Min. Anal. |
2023 |
DBLP DOI BibTeX RDF |
|
26 | Márton Elekes 0001, Vince Molnár, Zoltán Micskei |
To Do or Not to Do: Semantics and Patterns for Do Activities in UML PSSM State Machines. |
CoRR |
2023 |
DBLP DOI BibTeX RDF |
|
26 | Márton Elekes 0001, Vince Molnár, Zoltán Micskei |
Assessing the specification of modelling language semantics: a study on UML PSSM. |
Softw. Qual. J. |
2023 |
DBLP DOI BibTeX RDF |
|
26 | Quang-Hien Kha, Quang-Thai Ho, Nguyen-Quoc-Khanh Le |
Identifying SNARE Proteins Using an Alignment-Free Method Based on Multiscan Convolutional Neural Network and PSSM Profiles. |
J. Chem. Inf. Model. |
2022 |
DBLP DOI BibTeX RDF |
|
26 | Yanhua Xu 0001, Dominik Wojtczak |
Predicting Influenza A Viral Host Using PSSM and Word Embeddings. |
CoRR |
2022 |
DBLP BibTeX RDF |
|
26 | Yu He, Shunfang Wang |
SE-BLTCNN: A channel attention adapted deep learning model based on PSSM for membrane protein classification. |
Comput. Biol. Chem. |
2022 |
DBLP DOI BibTeX RDF |
|
26 | Nguyen-Quoc-Khanh Le, Binh P. Nguyen |
Prediction of FMN Binding Sites in Electron Transport Chains Based on 2-D CNN and PSSM Profiles. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
26 | Chenchen Ding, Haitao Han, Qianyue Li, Xiaoxia Yang, Taigang Liu |
iT3SE-PX: Identification of Bacterial Type III Secreted Effectors Using PSSM Profiles and XGBoost Feature Selection. |
Comput. Math. Methods Medicine |
2021 |
DBLP DOI BibTeX RDF |
|
26 | Heena Farooq Bhat, M. Arif Wani |
Novel PSSM-Based Approaches for Gene Identification Using Support Vector Machine. |
J. Inf. Technol. Res. |
2021 |
DBLP DOI BibTeX RDF |
|
26 | Zheng Wang 0065, Yang Li, Li-Ping Li, Zhu-Hong You, Wenzhun Huang |
Self-Interacting Proteins Prediction from PSSM Based on Evolutionary Information. |
Sci. Program. |
2021 |
DBLP DOI BibTeX RDF |
|
26 | Yuzhi Guo, Jiaxiang Wu 0001, Hehuan Ma, Sheng Wang, Junzhou Huang |
EPTool: A New Enhancing PSSM Tool for Protein Secondary Structure Prediction. |
J. Comput. Biol. |
2021 |
DBLP DOI BibTeX RDF |
|
26 | Shougang Yuan, Yan Solihin, Huiyang Zhou |
PSSM: achieving secure memory for GPUs with partitioned and sectored security metadata. |
ICS |
2021 |
DBLP DOI BibTeX RDF |
|
26 | Márton Elekes 0001, Zoltán Micskei |
Towards Testing the UML PSSM Test Suite. |
LADC |
2021 |
DBLP DOI BibTeX RDF |
|
26 | Yanhua Xu 0001, Dominik Wojtczak |
Predicting Influenza A Viral Host Using PSSM and Word Embeddings. |
CIBCB |
2021 |
DBLP DOI BibTeX RDF |
|
26 | Yuzhi Guo, Jiaxiang Wu 0001, Hehuan Ma, Sheng Wang, Junzhou Huang |
Bagging MSA Learning: Enhancing Low-Quality PSSM with Deep Learning for Accurate Protein Structure Property Prediction. |
RECOMB |
2020 |
DBLP DOI BibTeX RDF |
|
26 | Haoyi Fu, Zicheng Cao, Mingyuan Li, Xinnan Xia, Shunfang Wang |
Prediction of Anuran Antimicrobial Peptides Using AdaBoost and Improved PSSM Profiles. |
BIBE |
2020 |
DBLP DOI BibTeX RDF |
|
26 | Hui-Juan Zhu, Zhu-Hong You, Wei-Lei Shi, Shoukun Xu, Tong-Hai Jiang, Li-Hua Zhuang |
Improved Prediction of Protein-Protein Interactions Using Descriptors Derived From PSSM via Gray Level Co-Occurrence Matrix. |
IEEE Access |
2019 |
DBLP DOI BibTeX RDF |
|
26 | Xin Gao, Donghua Wang, Jun Zhang, Qing Liao 0001, Bin Liu 0014 |
iRBP-Motif-PSSM: Identification of RNA-Binding Proteins Based on Collaborative Learning. |
IEEE Access |
2019 |
DBLP DOI BibTeX RDF |
|
26 | Shunfang Wang, Mingyuan Li, Lei Guo, Zicheng Cao, Yu Fei |
Efficient utilization on PSSM combining with recurrent neural network for membrane protein types prediction. |
Comput. Biol. Chem. |
2019 |
DBLP DOI BibTeX RDF |
|
26 | Fang Yuan, Gan Liu, Xiwen Yang, Shunfang Wang, Xueren Wang |
Prediction of oxidoreductase subfamily classes based on RFE-SND-CC-PSSM and machine learning methods. |
J. Bioinform. Comput. Biol. |
2019 |
DBLP DOI BibTeX RDF |
|
26 | Nguyen-Quoc-Khanh Le, Tuan-Tu Huynh, Edward Kien Yee Yapp, Hui-Yuan Yeh |
Identification of clathrin proteins by incorporating hyperparameter optimization in deep learning and PSSM profiles. |
Comput. Methods Programs Biomed. |
2019 |
DBLP DOI BibTeX RDF |
|
26 | Runtao Yang, Chengjin Zhang, Lina Zhang |
PSSM-PROREP: A Flexible Web Server for Generating Various Position Specific Score Matrix-derived Protein Representations. |
ICIA |
2018 |
DBLP DOI BibTeX RDF |
|
26 | Jiyun Zhou, Qin Lu 0001, Ruifeng Xu, Yulan He 0001, Hongpeng Wang |
EL_PSSM-RT: DNA-binding residue prediction by integrating ensemble learning with PSSM Relation Transformation. |
BMC Bioinform. |
2017 |
DBLP DOI BibTeX RDF |
|
26 | Jiawei Wang 0002, Bingjiao Yang, Jerico Nico De Leon Revote, André Leier, Tatiana T. Marquez-Lago, Geoffrey I. Webb, Jiangning Song, Kuo-Chen Chou, Trevor Lithgow |
POSSUM: a bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles. |
Bioinform. |
2017 |
DBLP DOI BibTeX RDF |
|
26 | Yehong Chen, Jinyong Cheng, Yihui Liu, Pil Seong Park |
A Novel Approach of Protein Secondary Structure Prediction by SVM Using PSSM Combined by Sequence Features. |
IntelliSys (1) |
2016 |
DBLP DOI BibTeX RDF |
|
26 | Yunyun Liang, Sanyang Liu, Shengli Zhang |
Prediction of Protein Structural Classes for Low-Similarity Sequences Based on Consensus Sequence and Segmented PSSM. |
Comput. Math. Methods Medicine |
2015 |
DBLP DOI BibTeX RDF |
|
26 | Zhisen Wei, Jing-Yu Yang 0001, Dong-Jun Yu |
Predicting Protein-Protein Interactions with Weighted PSSM Histogram and Random Forests. |
IScIDE (2) |
2015 |
DBLP DOI BibTeX RDF |
|
26 | Chao Huang, Jingqi Yuan |
Using radial basis function on the general form of Chou's pseudo amino acid composition and PSSM to predict subcellular locations of proteins with both single and multiple sites. |
Biosyst. |
2013 |
DBLP DOI BibTeX RDF |
|
26 | Lingyun Zou, Chonghan Nan, Fuquan Hu |
Accurate prediction of bacterial type IV secreted effectors using amino acid composition and PSSM profiles. |
Bioinform. |
2013 |
DBLP DOI BibTeX RDF |
|
26 | Abdollah Dehzangi, Kuldip K. Paliwal, James G. Lyons, Alok Sharma, Abdul Sattar 0001 |
Exploring Potential Discriminatory Information Embedded in PSSM to Enhance Protein Structural Class Prediction Accuracy. |
PRIB |
2013 |
DBLP DOI BibTeX RDF |
|
26 | Yin-Fu Huang, Shuying Chen |
Protein secondary structure prediction based on physicochemical features and PSSM by SVM. |
CIBCB |
2013 |
DBLP DOI BibTeX RDF |
|
26 | Xia Wang, Gang Mi, Cuicui Wang, Yongqing Zhang, Juan Li, Yanzhi Guo, Xuemei Pu, Menglong Li |
Prediction of flavin mono-nucleotide binding sites using modified PSSM profile and ensemble support vector machine. |
Comput. Biol. Medicine |
2012 |
DBLP DOI BibTeX RDF |
|
26 | Wen-Jun Shen, Hau-San Wong |
OWA-PSSM - A position specific scoring matrix based method integrated with OWA weights for HLA-DR peptide binding prediction. |
BIBM |
2012 |
DBLP DOI BibTeX RDF |
|
26 | Shu-An Chen, Yu-Yen Ou, Tzong-Yi Lee, M. Michael Gromiha |
Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties. |
Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
|
26 | Kaveh Kavousi, Behzad Moshiri, Mehdi Sadeghi, Babak Nadjar Araabi, Ali Akbar Moosavi-Movahedi |
A protein fold classifier formed by fusing different modes of pseudo amino acid composition via PSSM. |
Comput. Biol. Chem. |
2011 |
DBLP DOI BibTeX RDF |
|
26 | Khader Shameer, Paramasivam Nagarajan, Kumar Gaurav, Ramanathan Sowdhamini |
3PFDB - A database of Best Representative PSSM Profiles (BRPs) of Protein Families generated using a novel data mining approach. |
BioData Min. |
2009 |
DBLP DOI BibTeX RDF |
|
26 | P. Eugene Xavier, E. R. Naganathan |
Productivity improvement in software projects using 2-dimensional probabilistic software stability model (PSSM). |
ACM SIGSOFT Softw. Eng. Notes |
2009 |
DBLP DOI BibTeX RDF |
|
26 | Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz |
Significant speedup of database searches with HMMs by search space reduction with PSSM family models. |
Bioinform. |
2009 |
DBLP DOI BibTeX RDF |
|
26 | Eric Y. T. Juan, W. J. Li, J. H. Jhang, C. H. Chiu |
Predicting Protein Subcellular Localizations for Gram-Negative Bacteria Using DP-PSSM and Support Vector Machines. |
CISIS |
2009 |
DBLP DOI BibTeX RDF |
|
26 | Darby Tien-Hao Chang, Hsuan-Yu Huang, Yu-Tang Syu, Chih-Peng Wu |
Real value prediction of protein solvent accessibility using enhanced PSSM features. |
BMC Bioinform. |
2008 |
DBLP DOI BibTeX RDF |
|
26 | Ruchi Verma, Ajit Tiwari, Sukhwinder Kaur, Grish C. Varshney, Gajendra P. S. Raghava |
Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles. |
BMC Bioinform. |
2008 |
DBLP DOI BibTeX RDF |
|
26 | Yu-Yen Ou, M. Michael Gromiha, Shu-An Chen, Makiko Suwa |
TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles. |
Comput. Biol. Chem. |
2008 |
DBLP DOI BibTeX RDF |
|
26 | Piyushkumar A. Mundra, Madhan Kumar, K. Krishna Kumar, Valadi K. Jayaraman, Bhaskar D. Kulkarni |
Using pseudo amino acid composition to predict protein subnuclear localization: Approached with PSSM. |
Pattern Recognit. Lett. |
2007 |
DBLP DOI BibTeX RDF |
|
26 | Shinn-Ying Ho, Fu-Chieh Yu, Chia-Yun Chang, Hui-Ling Huang |
Design of accurate predictors for DNA-binding sites in proteins using hybrid SVM-PSSM method. |
Biosyst. |
2007 |
DBLP DOI BibTeX RDF |
|
26 | Yu-Yen Ou, Shu-An Chen, Chung-Lu Shao, Hao-Geng Hung |
Using Efficient RBF Network to Identify Interface Residues Based on PSSM Profiles and Biochemical Properties. |
PRIB |
2007 |
DBLP DOI BibTeX RDF |
|
26 | Chung-Tsai Su, Chien-Yu Chen 0001, Yu-Yen Ou |
Protein disorder prediction by condensed PSSM considering propensity for order or disorder. |
BMC Bioinform. |
2006 |
DBLP DOI BibTeX RDF |
|
26 | Ketil Malde, Robert Giegerich |
Calculating PSSM probabilities with lazy dynamic programming. |
J. Funct. Program. |
2006 |
DBLP DOI BibTeX RDF |
|
26 | Shandar Ahmad, Akinori Sarai |
PSSM-based prediction of DNA binding sites in proteins. |
BMC Bioinform. |
2005 |
DBLP DOI BibTeX RDF |
|
26 | Mauro Delorenzi, Terence P. Speed |
An HMM model for coiled-coil domains and a comparison with PSSM-based predictions. |
Bioinform. |
2002 |
DBLP DOI BibTeX RDF |
|
26 | Lawrence A. Kelley, Robert M. MacCallum, Michael J. E. Sternberg |
Recognition of remote protein homologies using three-dimensional information to generate a position specific scoring matrix in the program 3D-PSSM. |
RECOMB |
1999 |
DBLP DOI BibTeX RDF |
|
20 | Paul D. Yoo, Yung Shwen Ho, Bing Bing Zhou, Albert Y. Zomaya |
Adaptive Locality-Effective Kernel Machine for protein phosphorylation site prediction. |
IPDPS |
2008 |
DBLP DOI BibTeX RDF |
|
20 | Eilon Sharon, Eran Segal |
A Feature-Based Approach to Modeling Protein-DNA Interactions. |
RECOMB |
2007 |
DBLP DOI BibTeX RDF |
DNA sequence motifs, motif finder, probabilistic graphical models, Markov networks, transcription factor binding sites |
20 | Siddharth Singh, Krishnan Hajela, Ashwini Kumar Ramani |
RßHpred: Prediction of Right-Handed ß-Helix Fold from Protein Sequence Using SVM and Protein Threading. |
CIT |
2007 |
DBLP DOI BibTeX RDF |
|
20 | Chung-Tsai Su, Tong-Ming Hsu, Chien-Yu Chen 0001, Yu-Yen Ou, Yen-Jen Oyang |
Enhancing Protein Disorder Detection by Refined Secondary Structure Prediction. |
BIRD |
2007 |
DBLP DOI BibTeX RDF |
protein disorder prediction, Radial Basis Function Network, secondary structure |
20 | Jyh-Yeong Chang, Jia-Jie Shyu, Yi-Xiang Shi |
Fuzzy K-Nearest Neighbor Classifier to Predict Protein Solvent Accessibility. |
ICONIP (2) |
2007 |
DBLP DOI BibTeX RDF |
|
20 | Kuan Yang, Youping Deng, Chaoyang Zhang, Mohamed O. Elasri |
Identification of New Members of Hydrophobin Family Using Primary Structure Analysis. |
IMSCCS (1) |
2006 |
DBLP DOI BibTeX RDF |
Hydrophobin, Batch BLAST, Motif finding, MEME |
20 | Manuel Middendorf, Anshul Kundaje, Mihir Shah, Yoav Freund, Chris Wiggins 0001, Christina S. Leslie |
Motif Discovery Through Predictive Modeling of Gene Regulation. |
RECOMB |
2005 |
DBLP DOI BibTeX RDF |
|
20 | Shing-Hwang Doong, Chi Y. Yeh |
Secondary Structure Prediction Using SVM and Clustering. |
HIS |
2004 |
DBLP DOI BibTeX RDF |
|
Displaying result #1 - #71 of 71 (100 per page; Change: )
|
|