Search results for "PSSM"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
128	Peter Clote	Performance Comparison of Generalized PSSM in Signal Peptide Cleavage Site.	BIBE	2003	DBLP DOI BibTeX RDF
95	Huiyun Yang, Ouyan Shi, Xin Tian 0004	Combining Physico-chemical Properties with PSSM for Protein Secondary Structure Prediction Using BP Neural Network.	BMEI (1)	2008	DBLP DOI BibTeX RDF	hydrophobicity, isoelectric point, PSSM, prediction, BP neural network, protein secondary structure
90	Wei Zhong, Gulsah Altun, Xinmin Tian, Robert W. Harrison, Phang C. Tai, Yi Pan 0001	Parallel protein secondary structure prediction schemes using Pthread and OpenMP over hyper-threading technology.	J. Supercomput.	2007	DBLP DOI BibTeX RDF	DBNN (Denoeux Belief Neural Network), MPI (Message Passing Interface), Hyper-threading, BLOSUM62 matrix, Hydrophobicity matrix, PSSM (Position Specific Scoring Matrix), Neural networks, Parallel architecture, OpenMP, Speedup, Pthread, Protein secondary structure prediction
82	Eleazar Eskin	From profiles to patterns and back again: a branch and bound algorithm for finding near optimal motif profiles.	RECOMB	2004	DBLP DOI BibTeX RDF	patterns, profiles, transcription factor binding sites, motif-finding
66	E. R. Naganathan, P. Eugene Xavier	Architecting autonomic computing systems through Probabilistic Software Stability Model (PSSM).	ICIS	2009	DBLP DOI BibTeX RDF	business object (BO), enduring business theme (EBT), industry object (IO), software engineering, requirements, autonomic computing, function points, software stability
54	Christopher J. Friedline, Xueping Zhang, Zendra E. Zehner, Zhongming Zhao	FindSUMO: A PSSM-Based Method for Sumoylation Site Prediction.	ICIC (2)	2008	DBLP DOI BibTeX RDF	SUMO, sumoylation, PSSM, position-specific scoring matrix
51	Qin Wang, Boyuan Wang, Zhenlei Xu, Jiaxiang Wu 0001, Peilin Zhao, Zhen Li 0026, Sheng Wang, Junzhou Huang, Shuguang Cui	PSSM-Distil: Protein Secondary Structure Prediction (PSSP) on Low-Quality PSSM by Knowledge Distillation with Contrastive Learning.	AAAI	2021	DBLP DOI BibTeX RDF
49	Siddharth Singh, Krishnan Hajela, Ashwini Kumar Ramani	SVM-BetaPred: Prediction of Right-Handed ß-Helix Fold from Protein Sequence Using SVM.	PRIB	2007	DBLP DOI BibTeX RDF	ß-helix fold, ß-sheet stacking, pectate lyase, fold recognition, PSSM, Support Vector Machines, SVM, secondary structure
46	Yu-Yen Ou, Shu-An Chen	Using Efficient RBF Networks to Classify Transport Proteins Based on PSSM Profiles and Biochemical Properties.	IWANN (1)	2009	DBLP DOI BibTeX RDF
46	Hae-Jin Hu, Phang C. Tai, Robert W. Harrison, Jieyue He, Yi Pan 0001	Protein Secondary Structure Prediction Using Support Vector Machine With a PSSM Profile and an Advanced Tertiary Classifier.	CSB Workshops	2005	DBLP DOI BibTeX RDF
41	Tatsuya Akutsu, Hideo Bannai, Satoru Miyano, Sascha Ott	On the Complexity of Deriving Position Specific Score Matrices from Examples.	CPM	2002	DBLP DOI BibTeX RDF
28	Wei Li, Yuehui Chen, Yaou Zhao	Multi-layer Ensemble Classifiers on Protein Secondary Structure Prediction.	ICIC (1)	2008	DBLP DOI BibTeX RDF	PSSM, Protein secondary structure prediction, Ensemble classification
26	Zhihua Du, Tianyou Huang, Vladimir N. Uversky, Jianqiang Li 0001	Predicting TF Proteins by Incorporating Evolution Information Through PSSM.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
26	Xin Liu, Yaping Lu, Liang Wang, Wei Geng, Xinyi Shi, Xiao Zhang	RF-PSSM: A Combination of Rotation Forest Algorithm and Position-Specific Scoring Matrix for Improved Prediction of Protein-Protein Interactions Between Hepatitis C Virus and Human.	Big Data Min. Anal.	2023	DBLP DOI BibTeX RDF
26	Márton Elekes 0001, Vince Molnár, Zoltán Micskei	To Do or Not to Do: Semantics and Patterns for Do Activities in UML PSSM State Machines.	CoRR	2023	DBLP DOI BibTeX RDF
26	Márton Elekes 0001, Vince Molnár, Zoltán Micskei	Assessing the specification of modelling language semantics: a study on UML PSSM.	Softw. Qual. J.	2023	DBLP DOI BibTeX RDF
26	Quang-Hien Kha, Quang-Thai Ho, Nguyen-Quoc-Khanh Le	Identifying SNARE Proteins Using an Alignment-Free Method Based on Multiscan Convolutional Neural Network and PSSM Profiles.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
26	Yanhua Xu 0001, Dominik Wojtczak	Predicting Influenza A Viral Host Using PSSM and Word Embeddings.	CoRR	2022	DBLP BibTeX RDF
26	Yu He, Shunfang Wang	SE-BLTCNN: A channel attention adapted deep learning model based on PSSM for membrane protein classification.	Comput. Biol. Chem.	2022	DBLP DOI BibTeX RDF
26	Nguyen-Quoc-Khanh Le, Binh P. Nguyen	Prediction of FMN Binding Sites in Electron Transport Chains Based on 2-D CNN and PSSM Profiles.	IEEE ACM Trans. Comput. Biol. Bioinform.	2021	DBLP DOI BibTeX RDF
26	Chenchen Ding, Haitao Han, Qianyue Li, Xiaoxia Yang, Taigang Liu	iT3SE-PX: Identification of Bacterial Type III Secreted Effectors Using PSSM Profiles and XGBoost Feature Selection.	Comput. Math. Methods Medicine	2021	DBLP DOI BibTeX RDF
26	Heena Farooq Bhat, M. Arif Wani	Novel PSSM-Based Approaches for Gene Identification Using Support Vector Machine.	J. Inf. Technol. Res.	2021	DBLP DOI BibTeX RDF
26	Zheng Wang 0065, Yang Li, Li-Ping Li, Zhu-Hong You, Wenzhun Huang	Self-Interacting Proteins Prediction from PSSM Based on Evolutionary Information.	Sci. Program.	2021	DBLP DOI BibTeX RDF
26	Yuzhi Guo, Jiaxiang Wu 0001, Hehuan Ma, Sheng Wang, Junzhou Huang	EPTool: A New Enhancing PSSM Tool for Protein Secondary Structure Prediction.	J. Comput. Biol.	2021	DBLP DOI BibTeX RDF
26	Shougang Yuan, Yan Solihin, Huiyang Zhou	PSSM: achieving secure memory for GPUs with partitioned and sectored security metadata.	ICS	2021	DBLP DOI BibTeX RDF
26	Márton Elekes 0001, Zoltán Micskei	Towards Testing the UML PSSM Test Suite.	LADC	2021	DBLP DOI BibTeX RDF
26	Yanhua Xu 0001, Dominik Wojtczak	Predicting Influenza A Viral Host Using PSSM and Word Embeddings.	CIBCB	2021	DBLP DOI BibTeX RDF
26	Yuzhi Guo, Jiaxiang Wu 0001, Hehuan Ma, Sheng Wang, Junzhou Huang	Bagging MSA Learning: Enhancing Low-Quality PSSM with Deep Learning for Accurate Protein Structure Property Prediction.	RECOMB	2020	DBLP DOI BibTeX RDF
26	Haoyi Fu, Zicheng Cao, Mingyuan Li, Xinnan Xia, Shunfang Wang	Prediction of Anuran Antimicrobial Peptides Using AdaBoost and Improved PSSM Profiles.	BIBE	2020	DBLP DOI BibTeX RDF
26	Hui-Juan Zhu, Zhu-Hong You, Wei-Lei Shi, Shoukun Xu, Tong-Hai Jiang, Li-Hua Zhuang	Improved Prediction of Protein-Protein Interactions Using Descriptors Derived From PSSM via Gray Level Co-Occurrence Matrix.	IEEE Access	2019	DBLP DOI BibTeX RDF
26	Xin Gao, Donghua Wang, Jun Zhang, Qing Liao 0001, Bin Liu 0014	iRBP-Motif-PSSM: Identification of RNA-Binding Proteins Based on Collaborative Learning.	IEEE Access	2019	DBLP DOI BibTeX RDF
26	Shunfang Wang, Mingyuan Li, Lei Guo, Zicheng Cao, Yu Fei	Efficient utilization on PSSM combining with recurrent neural network for membrane protein types prediction.	Comput. Biol. Chem.	2019	DBLP DOI BibTeX RDF
26	Fang Yuan, Gan Liu, Xiwen Yang, Shunfang Wang, Xueren Wang	Prediction of oxidoreductase subfamily classes based on RFE-SND-CC-PSSM and machine learning methods.	J. Bioinform. Comput. Biol.	2019	DBLP DOI BibTeX RDF
26	Nguyen-Quoc-Khanh Le, Tuan-Tu Huynh, Edward Kien Yee Yapp, Hui-Yuan Yeh	Identification of clathrin proteins by incorporating hyperparameter optimization in deep learning and PSSM profiles.	Comput. Methods Programs Biomed.	2019	DBLP DOI BibTeX RDF
26	Runtao Yang, Chengjin Zhang, Lina Zhang	PSSM-PROREP: A Flexible Web Server for Generating Various Position Specific Score Matrix-derived Protein Representations.	ICIA	2018	DBLP DOI BibTeX RDF
26	Jiyun Zhou, Qin Lu 0001, Ruifeng Xu, Yulan He 0001, Hongpeng Wang	EL_PSSM-RT: DNA-binding residue prediction by integrating ensemble learning with PSSM Relation Transformation.	BMC Bioinform.	2017	DBLP DOI BibTeX RDF
26	Jiawei Wang 0002, Bingjiao Yang, Jerico Nico De Leon Revote, André Leier, Tatiana T. Marquez-Lago, Geoffrey I. Webb, Jiangning Song, Kuo-Chen Chou, Trevor Lithgow	POSSUM: a bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles.	Bioinform.	2017	DBLP DOI BibTeX RDF
26	Yehong Chen, Jinyong Cheng, Yihui Liu, Pil Seong Park	A Novel Approach of Protein Secondary Structure Prediction by SVM Using PSSM Combined by Sequence Features.	IntelliSys (1)	2016	DBLP DOI BibTeX RDF
26	Yunyun Liang, Sanyang Liu, Shengli Zhang	Prediction of Protein Structural Classes for Low-Similarity Sequences Based on Consensus Sequence and Segmented PSSM.	Comput. Math. Methods Medicine	2015	DBLP DOI BibTeX RDF
26	Zhisen Wei, Jing-Yu Yang 0001, Dong-Jun Yu	Predicting Protein-Protein Interactions with Weighted PSSM Histogram and Random Forests.	IScIDE (2)	2015	DBLP DOI BibTeX RDF
26	Chao Huang, Jingqi Yuan	Using radial basis function on the general form of Chou's pseudo amino acid composition and PSSM to predict subcellular locations of proteins with both single and multiple sites.	Biosyst.	2013	DBLP DOI BibTeX RDF
26	Lingyun Zou, Chonghan Nan, Fuquan Hu	Accurate prediction of bacterial type IV secreted effectors using amino acid composition and PSSM profiles.	Bioinform.	2013	DBLP DOI BibTeX RDF
26	Abdollah Dehzangi, Kuldip K. Paliwal, James G. Lyons, Alok Sharma, Abdul Sattar 0001	Exploring Potential Discriminatory Information Embedded in PSSM to Enhance Protein Structural Class Prediction Accuracy.	PRIB	2013	DBLP DOI BibTeX RDF
26	Yin-Fu Huang, Shuying Chen	Protein secondary structure prediction based on physicochemical features and PSSM by SVM.	CIBCB	2013	DBLP DOI BibTeX RDF
26	Xia Wang, Gang Mi, Cuicui Wang, Yongqing Zhang, Juan Li, Yanzhi Guo, Xuemei Pu, Menglong Li	Prediction of flavin mono-nucleotide binding sites using modified PSSM profile and ensemble support vector machine.	Comput. Biol. Medicine	2012	DBLP DOI BibTeX RDF
26	Wen-Jun Shen, Hau-San Wong	OWA-PSSM - A position specific scoring matrix based method integrated with OWA weights for HLA-DR peptide binding prediction.	BIBM	2012	DBLP DOI BibTeX RDF
26	Shu-An Chen, Yu-Yen Ou, Tzong-Yi Lee, M. Michael Gromiha	Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties.	Bioinform.	2011	DBLP DOI BibTeX RDF
26	Kaveh Kavousi, Behzad Moshiri, Mehdi Sadeghi, Babak Nadjar Araabi, Ali Akbar Moosavi-Movahedi	A protein fold classifier formed by fusing different modes of pseudo amino acid composition via PSSM.	Comput. Biol. Chem.	2011	DBLP DOI BibTeX RDF
26	Khader Shameer, Paramasivam Nagarajan, Kumar Gaurav, Ramanathan Sowdhamini	3PFDB - A database of Best Representative PSSM Profiles (BRPs) of Protein Families generated using a novel data mining approach.	BioData Min.	2009	DBLP DOI BibTeX RDF
26	P. Eugene Xavier, E. R. Naganathan	Productivity improvement in software projects using 2-dimensional probabilistic software stability model (PSSM).	ACM SIGSOFT Softw. Eng. Notes	2009	DBLP DOI BibTeX RDF
26	Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz	Significant speedup of database searches with HMMs by search space reduction with PSSM family models.	Bioinform.	2009	DBLP DOI BibTeX RDF
26	Eric Y. T. Juan, W. J. Li, J. H. Jhang, C. H. Chiu	Predicting Protein Subcellular Localizations for Gram-Negative Bacteria Using DP-PSSM and Support Vector Machines.	CISIS	2009	DBLP DOI BibTeX RDF
26	Darby Tien-Hao Chang, Hsuan-Yu Huang, Yu-Tang Syu, Chih-Peng Wu	Real value prediction of protein solvent accessibility using enhanced PSSM features.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
26	Ruchi Verma, Ajit Tiwari, Sukhwinder Kaur, Grish C. Varshney, Gajendra P. S. Raghava	Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
26	Yu-Yen Ou, M. Michael Gromiha, Shu-An Chen, Makiko Suwa	TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles.	Comput. Biol. Chem.	2008	DBLP DOI BibTeX RDF
26	Piyushkumar A. Mundra, Madhan Kumar, K. Krishna Kumar, Valadi K. Jayaraman, Bhaskar D. Kulkarni	Using pseudo amino acid composition to predict protein subnuclear localization: Approached with PSSM.	Pattern Recognit. Lett.	2007	DBLP DOI BibTeX RDF
26	Shinn-Ying Ho, Fu-Chieh Yu, Chia-Yun Chang, Hui-Ling Huang	Design of accurate predictors for DNA-binding sites in proteins using hybrid SVM-PSSM method.	Biosyst.	2007	DBLP DOI BibTeX RDF
26	Yu-Yen Ou, Shu-An Chen, Chung-Lu Shao, Hao-Geng Hung	Using Efficient RBF Network to Identify Interface Residues Based on PSSM Profiles and Biochemical Properties.	PRIB	2007	DBLP DOI BibTeX RDF
26	Chung-Tsai Su, Chien-Yu Chen 0001, Yu-Yen Ou	Protein disorder prediction by condensed PSSM considering propensity for order or disorder.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
26	Ketil Malde, Robert Giegerich	Calculating PSSM probabilities with lazy dynamic programming.	J. Funct. Program.	2006	DBLP DOI BibTeX RDF
26	Shandar Ahmad, Akinori Sarai	PSSM-based prediction of DNA binding sites in proteins.	BMC Bioinform.	2005	DBLP DOI BibTeX RDF
26	Mauro Delorenzi, Terence P. Speed	An HMM model for coiled-coil domains and a comparison with PSSM-based predictions.	Bioinform.	2002	DBLP DOI BibTeX RDF
26	Lawrence A. Kelley, Robert M. MacCallum, Michael J. E. Sternberg	Recognition of remote protein homologies using three-dimensional information to generate a position specific scoring matrix in the program 3D-PSSM.	RECOMB	1999	DBLP DOI BibTeX RDF
20	Paul D. Yoo, Yung Shwen Ho, Bing Bing Zhou, Albert Y. Zomaya	Adaptive Locality-Effective Kernel Machine for protein phosphorylation site prediction.	IPDPS	2008	DBLP DOI BibTeX RDF
20	Eilon Sharon, Eran Segal	A Feature-Based Approach to Modeling Protein-DNA Interactions.	RECOMB	2007	DBLP DOI BibTeX RDF	DNA sequence motifs, motif finder, probabilistic graphical models, Markov networks, transcription factor binding sites
20	Siddharth Singh, Krishnan Hajela, Ashwini Kumar Ramani	RßHpred: Prediction of Right-Handed ß-Helix Fold from Protein Sequence Using SVM and Protein Threading.	CIT	2007	DBLP DOI BibTeX RDF
20	Chung-Tsai Su, Tong-Ming Hsu, Chien-Yu Chen 0001, Yu-Yen Ou, Yen-Jen Oyang	Enhancing Protein Disorder Detection by Refined Secondary Structure Prediction.	BIRD	2007	DBLP DOI BibTeX RDF	protein disorder prediction, Radial Basis Function Network, secondary structure
20	Jyh-Yeong Chang, Jia-Jie Shyu, Yi-Xiang Shi	Fuzzy K-Nearest Neighbor Classifier to Predict Protein Solvent Accessibility.	ICONIP (2)	2007	DBLP DOI BibTeX RDF
20	Kuan Yang, Youping Deng, Chaoyang Zhang, Mohamed O. Elasri	Identification of New Members of Hydrophobin Family Using Primary Structure Analysis.	IMSCCS (1)	2006	DBLP DOI BibTeX RDF	Hydrophobin, Batch BLAST, Motif finding, MEME
20	Manuel Middendorf, Anshul Kundaje, Mihir Shah, Yoav Freund, Chris Wiggins 0001, Christina S. Leslie	Motif Discovery Through Predictive Modeling of Gene Regulation.	RECOMB	2005	DBLP DOI BibTeX RDF
20	Shing-Hwang Doong, Chi Y. Yeh	Secondary Structure Prediction Using SVM and Clustering.	HIS	2004	DBLP DOI BibTeX RDF