Search results for "Peptide"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
304	Adam Liwo, Jaroslaw Pillardy, Cezary Czaplewski, Jooyoung Lee 0002, Daniel R. Ripoll, Malgorzata Groth, Sylwia Rodziewicz-Motowidlo, Rajmund Kazmierkiewicz, Ryszard J. Wawak, Stanislaw Oldziej, Harold A. Scheraga	UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody terms.	RECOMB	2000	DBLP DOI BibTeX RDF
168	Chen Yanover, Tomer Hertz	Predicting Protein-Peptide Binding Affinity by Learning Peptide-Peptide Distance Functions.	RECOMB	2005	DBLP DOI BibTeX RDF
127	Kang Ning 0001, Ket Fah Chong, Hon Wai Leong	A Database Search Algorithm for Identification of Peptides with Multiple Charges Using Tandem Mass Spectrometry.	BioDM	2006	DBLP DOI BibTeX RDF
124	Aaron A. Klammer, Xianhua Yi, Michael J. MacCoss, William Stafford Noble	Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions.	RECOMB	2007	DBLP DOI BibTeX RDF	peptide identification, retention time, chromatography, machine learning, support vector regression, proteomics, Mass spectrometry
91	Kamaljit Kaur	Dynamic effects on Peptide Structure: Molecular dynamics simulations of a peptide employing ensemble of peptides.	ICMENS	2005	DBLP DOI BibTeX RDF
90	Pedro A. Reche, Ellis L. Reinherz	Definition of MHC Supertypes Through Clustering of MHC Peptide Binding Repertoires.	ICARIS	2004	DBLP DOI BibTeX RDF
90	Nathan Edwards, Ross Lippert	Generating Peptide Candidates from Amino-Acid Sequence Databases for Protein Identification via Mass Spectrometry.	WABI	2002	DBLP DOI BibTeX RDF
86	Eser Aygün, B. John Oommen, Zehra Cataltepe	On Utilizing Optimal and Information Theoretic Syntactic Modeling for Peptide Classification.	PRIB	2009	DBLP DOI BibTeX RDF	Optimal and Information Theoretic Syntactic Classifcation, Peptide Classification, Syntactic Pattern Recognition, Biological Sequence Analysis, Sequence Processing
86	Changyong Yu, Guoren Wang, Yi Zhao, Wendan Zhai	An Ion Transformation Approach for De Novo Peptide Sequencing via Tandem Mass Spectra.	BMEI (1)	2008	DBLP DOI BibTeX RDF	Tandem mass spectrum, de novo peptide sequencing
77	Peter J. van der Veen, Lodewyk F. A. Wessels, J. W. Slootstra, R. H. Meloen, Marcel J. T. Reinders, Johannes Hellendoorn	Determination of Binding Amino Acids Based on Random Peptide Array Screening Data.	WABI	2001	DBLP DOI BibTeX RDF
73	M. Sakthi Balan, Helmut Jürgensen	On the universality of peptide computing.	Nat. Comput.	2008	DBLP DOI BibTeX RDF	Peptide computing, DNA computing, Molecular computing, Unconventional computing
73	Margaret Dah-Tsyr Chang, Hao-Teng Chang, Rong-Yuan Huang, Wen-Shyong Tzou, Chih-Hong Liu, Wei-Jun Zhung, Hsien-Wei Wang, Chun-Tien Chang, Tun-Wen Pai	A Database for Prediction of Unique Peptide Motifs as Linear Epitopes.	ISBRA	2007	DBLP DOI BibTeX RDF	unique peptide motif, linear epitope, antigenicity, protein family, specificity
64	Zengyou He, Chao Yang, Can Yang 0002, Robert Z. Qi, Jason Po-Ming Tam, Weichuan Yu	Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification.	RECOMB	2009	DBLP DOI BibTeX RDF
64	Julio J. Valdés, Alan J. Barton, Arsalan S. Haqqani	Analysis of mass spectrometry data of cerebral stroke samples: an evolutionary computation approach to resolve and quantify peptide peaks.	Genet. Program. Evolvable Mach.	2008	DBLP DOI BibTeX RDF	Mass spectroscopy, Genetic algorithms, Evolutionary computation, Differential evolution, Proteomics, Medicine, Model fitting
64	Costas P. Exarchos, Themis P. Exarchos, Costas Papaloukas, Anastassios N. Troganis, Dimitrios I. Fotiadis	Systematic elicitation of sequence patterns associated with non-proline cis peptide bonds.	BIBE	2008	DBLP DOI BibTeX RDF
64	Galip Gürkan Yardimci, Alper Küçükural, Yücel Saygin, Osman Ugur Sezerman	Modified Association Rule Mining Approach for the MHC-Peptide Binding Problem.	ISCIS	2006	DBLP DOI BibTeX RDF	MHC Class-I, reduced amino acid alphabet, data mining, Association rule mining, Peptides
64	Menaka Rajapakse, Lonce L. Wyse, Bertil Schmidt, Vladimir Brusic	Deriving Matrix of Peptide-MHC Interactions in Diabetic Mouse by Genetic Algorithm.	IDEAL	2005	DBLP DOI BibTeX RDF
64	Aaron A. Klammer, Christine C. Wu, Michael J. MacCoss, William Stafford Noble	Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra.	CSB	2005	DBLP DOI BibTeX RDF	charge state, machine learning, support vector machine, proteomics, mass spectrometry
64	Ian Shadforth, Daniel Crowther, Conrad Bessant	Search-Space Reduction of a Non-Redundant Peptide Database.	CSB	2004	DBLP DOI BibTeX RDF
63	Min Kyung Kim 0002, Hyun Seok Park, Seon Hee Park	Prediction of Plasma Membrane Spanning Region and Topology Using Hidden Markov Model and Neural Network.	KES	2004	DBLP DOI BibTeX RDF
60	Peng Zhou 0003, Xiang Chen, Zhicai Shang	Side-chain conformational space analysis (SCSA): A multi conformation-based QSAR approach for modeling and prediction of protein-peptide binding affinities.	J. Comput. Aided Mol. Des.	2009	DBLP DOI BibTeX RDF	Multi-conformation-based quantitative structure-activity relationship, Side-chain conformational space analysis, Rotamer library, Self-consistent mean field theory, Protein-peptide complex, HLA-A*0201-restricted CTL epitope
60	Wen Zhang 0008, Juan Liu, Yanqing Niu	Quantitative prediction of MHC-II peptide binding affinity using relevance vector machine.	Appl. Intell.	2009	DBLP DOI BibTeX RDF	Quantitative prediction, MHC-II peptide binding, Pattern recognition, Relevance vector machine
60	Zheng Rong Yang	Explore Residue Significance in Peptide Classification.	HAIS	2008	DBLP DOI BibTeX RDF	Peptide classification, residue significance, neural learning, bio-basis function
60	Ignasi Belda, Xavier Llorà, Ernest Giralt	Evolutionary algorithms and de novo peptide design.	Soft Comput.	2006	DBLP DOI BibTeX RDF	Ligand design, Peptide design, Genetic algorithms, Evolutionary algorithms, Surface patch
60	Tim Hohm, Daniel Hoffmann	A multi-objective evolutionary approach to peptide structure redesign and stabilization.	GECCO	2005	DBLP DOI BibTeX RDF	peptide design, evolutionary algorithm, multi-objective optimization
55	Xiang Cai, Wei Han	Development of a Hybrid-Resolution Force Field for Peptide Self-Assembly Simulations: Optimizing Peptide-Peptide and Peptide-Solvent Interactions.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
52	Yu Lin 0001, Yantao Qiao, Shiwei Sun, Chungong Yu, Gongjin Dong, Dongbo Bu	A Fragmentation Event Model for Peptide Identification by Mass Spectrometry.	RECOMB	2008	DBLP DOI BibTeX RDF
52	Jörg D. Wichard, Sebastian Bandholtz, Carsten Grötzinger, Ronald Kühne	Topology Preserving Neural Networks for Peptide Design in Drug Discovery.	CIBB	2008	DBLP DOI BibTeX RDF
52	M. Sakthi Balan, Helmut Jürgensen	Peptide Computing - Universality and Theoretical Model.	UC	2006	DBLP DOI BibTeX RDF
52	Jung Hun Oh, Jean Gao	Peptide Identification by Tandem Mass Spectra: An Efficient Parallel Searching.	BIBE	2005	DBLP DOI BibTeX RDF
52	Robert M. Day, Andrey Borziak, Andrey Gorin	PPM-Chain De novo Peptide Identification Program Comparable in Performance to Sequest.	CSB	2004	DBLP DOI BibTeX RDF
52	Nathan Edwards, Ross Lippert	Sequence Database Compression for Peptide Identification from Tandem Mass Spectra.	WABI	2004	DBLP DOI BibTeX RDF
52	Jacques Colinge, Alexandre Masselot, Jérôme Magnin	A Systematic Statistical Analysis of Ion Trap Tandem Mass Spectra in View of Peptide Scoring.	WABI	2003	DBLP DOI BibTeX RDF
51	Gaurav Sharma 0003, Kaushal Rege, David Budil, Martin L. Yarmush, Constantinos Mavroidis	Design and modeling of a protein based nanoGripper.	IROS	2008	DBLP DOI BibTeX RDF
51	Zhengdeng Lei, Yang Dai	A Class of New Kernels Based on High-Scored Pairs of k-Peptides for SVMs and Its Application for Prediction of Protein Subcellular Localization.	Trans. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF	Protein subcellular localization, BLOSUM matrix, Gram-negative bacteria, support vector machine, kernel
51	M. Sakthi Balan	String Binding-Blocking Automata.	GECCO	2003	DBLP DOI BibTeX RDF
48	Kepa Ruiz-Mirazo, Fabio Mavelli	Simulation Model for Functionalized Vesicles: Lipid-Peptide Integration in Minimal Protocells.	ECAL	2007	DBLP DOI BibTeX RDF	lipid-peptide protocells, stochastic kinetics (Gillespie method), autocatalysis, osmotic crisis, vesicle reproduction, self-assembly
47	Hasan Ogul, Ü. Erkan Mumcuoglu	Subcellular Localization Prediction with New Protein Encoding Schemes.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF	n{hbox{-}}rm peptide composition, probabilistic suffix tree, support vector machines, subcellular localization
41	Thomas Litfin, Yuedong Yang, Yaoqi Zhou	SPOT-Peptide: Template-Based Prediction of Peptide-Binding Proteins and Peptide-Binding Sites.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
41	Panchada Ch. V. Govindu, Priyanka Chakraborty, Angshu Dutta, Konkallu Hanumae Gowd	Structural space of intramolecular peptide disulfides: Analysis of peptide toxins retrieved from venomous peptide databases.	Comput. Biol. Chem.	2017	DBLP DOI BibTeX RDF
41	Zheng Rong Yang	Peptide Bioinformatics- Peptide Classification Using Peptide Machines.	Artificial Neural Networks	2009	DBLP DOI BibTeX RDF
40	Wen Zhang 0008, Juan Liu, Yanqing Niu, Lian Wang, Zhi Zhang	Quantitative Prediction of MHC-II Peptide Binding Affinity Using Global Description of Peptide Sequences.	BMEI (1)	2008	DBLP DOI BibTeX RDF	Quantitative prediction, MHC-II, Support vector regression
39	Ritendra Datta, Marshall W. Bern	Spectrum Fusion: Using Multiple Mass Spectra for De Novo Peptide Sequencing.	RECOMB	2008	DBLP DOI BibTeX RDF
39	An-Min Zou, Jiarui Ding, Jin-Hong Shi, Fang-Xiang Wu	Charge state determination of peptide tandem mass spectra using support vector machine (SVM).	BIBE	2008	DBLP DOI BibTeX RDF
39	Matthew A. Goto, Eric J. Schwabe	A Dynamic Programming Algorithm for De Novo Peptide Sequencing with Variable Scoring.	ISBRA	2008	DBLP DOI BibTeX RDF
39	Noah Zaitlen, Manuel Reyes-Gomez, David Heckerman, Nebojsa Jojic	Shift-Invariant Adaptive Double Threading: Learning MHC II - Peptide Binding.	RECOMB	2007	DBLP DOI BibTeX RDF
39	David C. Trudgian, Zheng Rong Yang	Substitution Matrix Optimisation for Peptide Classification.	EvoBIO	2007	DBLP DOI BibTeX RDF
39	Alexandra Scherbart, Wiebke Timm, Sebastian Böcker, Tim W. Nattkemper	Neural Network Approach for Mass Spectrometry Prediction by Peptide Prototyping.	ICANN (2)	2007	DBLP DOI BibTeX RDF
39	Wolfgang P. Lehrach, Dirk Husmeier, Christopher K. I. Williams	Probabilistic in Silico Prediction of Protein-Peptide Interactions.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
39	Peter Clote	Performance Comparison of Generalized PSSM in Signal Peptide Cleavage Site.	BIBE	2003	DBLP DOI BibTeX RDF
39	Liliana Florea, Bjarni V. Halldórsson, Oliver Kohlbacher, Russell Schwartz, Stephen Hoffman, Sorin Istrail	Epitope Prediction Algorithms for Peptide based Vaccine Design.	CSB	2003	DBLP DOI BibTeX RDF
39	Zhenglin Yang, Guirong Liu	3D Protein Peptide Chain Search Using an Improved Genetic Algorithm.	ICCSA (1)	2003	DBLP DOI BibTeX RDF
39	M. Sakthi Balan, Kamala Krithivasan, Y. Sivasubramanyam	Peptide Computing - Universality and Complexity.	DNA	2001	DBLP DOI BibTeX RDF
38	Bernhard Knapp, Ulrich Omasits, Sophie Frantal, Wolfgang Schreiner	A critical cross-validation of high throughput structural binding prediction methods for pMHC.	J. Comput. Aided Mol. Des.	2009	DBLP DOI BibTeX RDF	T cell epitope prediction, Threading, Energy minimization, Substitution, Scoring
38	Gennady Verkhivker	Coarse-Grained Modeling of the HIV-1 Protease Binding Mechanisms: II. Folding Inhibition.	CIBB	2008	DBLP DOI BibTeX RDF	HIV-1 protease, folding inhibitors, protein conformational ensembles, Monte Carlo simulations, drug design, molecular docking
38	Nico Pfeifer, Oliver Kohlbacher	Multiple Instance Learning Allows MHC Class II Epitope Predictions Across Alleles.	WABI	2008	DBLP DOI BibTeX RDF
38	Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner	A New Approach to Protein Identification.	RECOMB	2006	DBLP DOI BibTeX RDF
38	Zhengdeng Lei, Yang Dai	A New Kernel Based on High-Scored Pairs of Tri-peptides and Its Application in Prediction of Protein Subcellular Localization.	International Conference on Computational Science (2)	2005	DBLP DOI BibTeX RDF	protein subcellular localization, Gram-negative bacteria, BLOSUM matrix, support vector machine, kernel
38	Dimitrios Morikis, Christodoulos A. Floudas, John D. Lambris	Structure-Based Integrative Computational and Experimental Approach for the Optimization of Drug Design.	International Conference on Computational Science (2)	2005	DBLP DOI BibTeX RDF
38	Huiru Zheng, Piyush C. Ojha, Stephen McClean, Norman D. Black, John G. Hughes, Chris Shaw 0001	Peptidomic Pattern Analysis and Taxonomy of Amphibian Species.	CIS	2004	DBLP DOI BibTeX RDF
38	Ruben Abagyan	Computational structural proteomics and virtual ligand screening.	RECOMB	2002	DBLP DOI BibTeX RDF
35	Changyong Yu, Guoren Wang, Yuhai Zhao, Keming Mao	A Multi-stage Spectral Alignment Strategy for Unrestrictive PTM Peptide Identification.	BIBE	2010	DBLP DOI BibTeX RDF	peptide identification, spectral alignment, database search, tandem mass spectra
35	Hao-Teng Chang, Chung-Hsiao Chao, Yu-Fong Lin, Louis J. Tseng, Tun-Wen Pai, Tsan-Huang Shih, Margaret Dah-Tsyr Chang, Pei-Wen Tsai	Prediction of Regulatory Molecules for Enhancement of EGFR Overexpression Triggered by Signal Peptide of Ribonuclease 3.	CISIS	2010	DBLP DOI BibTeX RDF	ribonuclease 3, signal peptide, phage display, EGFR
35	Peter A. DiMaggio Jr., Christodoulos A. Floudas	Peptide Identification via Mixed-Integer Optimization.	Encyclopedia of Optimization	2009	DBLP DOI BibTeX RDF	Mixed-integer linear optimization, Peptide identification, Tandem mass spectrometry
35	Changyong Yu, Guoren Wang, Wendan Zhai, Keming Mao	A Novel Scoring Strategy for Identifying Peptide via Tandem Mass Spectra.	FSKD (5)	2009	DBLP DOI BibTeX RDF	peptide sequencing, scoring, tandem mass spectra
34	An Zeng, Dan Pan 0001, Jian-bin He	Prediction of MHC II-binding peptides using rough set-based rule sets ensemble.	Appl. Intell.	2007	DBLP DOI BibTeX RDF	Rule sets ensemble, Major Histocompatibility Complex, Peptide prediction, Rough set
34	Jingfen Zhang, Wen Gao 0001, Jinjin Cai, Simin He 0001, Rong Zeng, Runsheng Chen	Predicting Molecular Formulas of Fragment Ions with Isotope Patterns in Tandem Mass Spectra.	IEEE ACM Trans. Comput. Biol. Bioinform.	2005	DBLP DOI BibTeX RDF	Isotope patterns, peptide sequencing, tandem mass spectra
34	Ryan H. Lilien, Brian W. Stevens, Amy C. Anderson, Bruce Randall Donald	A novel ensemble-based scoring and search algorithm for protein redesign, and its application to modify the substrate specificity of the gramicidin synthetase a phenylalanine adenylation enzyme.	RECOMB	2004	DBLP DOI BibTeX RDF	enzyme design, fluorescence binding assay, molecular ensemble, non-ribosomal peptide synthetase, protein flexibility, protein-ligand binding, protein design
27	Romanos Fasoulis, Maurício Menegatti Rigo, Gregory Lizée, Dinler A. Antunes, Lydia E. Kavraki	APE-Gen2.0: Expanding Rapid Class I Peptide-Major Histocompatibility Complex Modeling to Post-Translational Modifications and Noncanonical Peptide Geometries.	J. Chem. Inf. Model.	2024	DBLP DOI BibTeX RDF
27	Milad Mohkam, Navid Nezafat, Younes Ghasemi	An in silico approach to de novo design of anti-microbial peptide from inspirited Komodo dragon's original VK6 peptide.	Int. J. Data Min. Bioinform.	2024	DBLP DOI BibTeX RDF
27	Shubham Vishnoi, Shayon Bhattacharya, Erica M. Walsh, Grace Ilevbare Okoh, Damien Thompson	Computational Peptide Design Cotargeting Glucagon and Glucagon-like Peptide-1 Receptors.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
27	Ke Yan 0003, Hongwu Lv, Yichen Guo, Wei Peng, Bin Liu 0014	sAMPpred-GAT: prediction of antimicrobial peptide by graph attention network and predicted peptide structure.	Bioinform.	2023	DBLP DOI BibTeX RDF
27	Xianjin Xu, Xiaoqin Zou	Predicting Protein-Peptide Complex Structures by Accounting for Peptide Flexibility and the Physicochemical Environment.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
27	Emine Topcu, Nashira H. Ridgeway, Kyle K. Biggar	PeSA 2.0: A software tool for peptide specificity analysis implementing positive and negative motifs and motif-based peptide scoring.	Comput. Biol. Chem.	2022	DBLP DOI BibTeX RDF
27	Valentin Junet, Xavier Daura	CNN-PepPred: an open-source tool to create convolutional NN models for the discovery of patterns in peptide sets - application to peptide-MHC class II binding prediction.	Bioinform.	2021	DBLP DOI BibTeX RDF
27	Kristian Barrett, Cameron J. Hunt, Lene Lange, Anne S. Meyer	Conserved unique peptide patterns (CUPP) online platform: peptide-based functional annotation of carbohydrate active enzymes.	Nucleic Acids Res.	2020	DBLP DOI BibTeX RDF
27	Samaneh Azari, Bing Xue 0001, Mengjie Zhang 0001, Lifeng Peng	Improving the Results of De novo Peptide Identification via Tandem Mass Spectrometry Using a Genetic Programming-based Scoring Function for Re-ranking Peptide-Spectrum Matches.	CoRR	2019	DBLP BibTeX RDF
27	Samaneh Azari, Bing Xue 0001, Mengjie Zhang 0001, Lifeng Peng	Improving the Results of De novo Peptide Identification via Tandem Mass Spectrometry Using a Genetic Programming-Based Scoring Function for Re-ranking Peptide-Spectrum Matches.	PRICAI (3)	2019	DBLP DOI BibTeX RDF
27	Ahmad Husein Alkaff, Mutiara Saragih, Mochammad Arfin Fardiansyah Nasution, Usman Sumo Friend Tambunan	Inhibition of Primed Ebola Virus Glycoprotein by Peptide Compound Conjugated to HIV-1 Tat Peptide Through a Virtual Screening Approach.	CIBB	2018	DBLP DOI BibTeX RDF
27	Francesco Villa	Computer simulations to engineer PDZ-peptide recognition. (Simulations numériques pour le dessin des interactions PDZ: peptide).		2018	RDF
27	Chunwei Ma, Shaohang Xu, Geng Liu, Xin Liu 0007, Xun Xu, Bo Wen, Siqi Liu	Improvement of peptide identification with considering the abundance of mRNA and peptide.	BMC Bioinform.	2017	DBLP DOI BibTeX RDF
27	Xingqing Xiao, Michelle E. Hung, Joshua N. Leonard, Carol K. Hall	Adding energy minimization strategy to peptide-design algorithm enables better search for RNA-binding peptides: Redesigned λ N peptide binds boxB RNA.	J. Comput. Chem.	2016	DBLP DOI BibTeX RDF
27	Matthew D. King, Thomas Long, Timothy L. Andersen, Owen M. McDougal	Genetic Algorithm Managed Peptide Mutant Screening: Optimizing Peptide Ligands for Targeted Receptor Binding.	J. Chem. Inf. Model.	2016	DBLP DOI BibTeX RDF
27	Martina Fischer, Bernhard Y. Renard	iPQF: a new peptide-to-protein summarization method using peptide spectra characteristics to improve protein quantification.	Bioinform.	2016	DBLP DOI BibTeX RDF
27	Benjamin Thomas Viart, C. Dias-Lopes, Edgar Ernesto Gonzalez Kozlova, C. F. B. Oliveira, C. Nguyen, G. Neshich, Carlos Chávez-Olórtegui, F. Molina, Liza Figueredo Felicori	EPI-peptide designer: a tool for designing peptide ligand libraries based on epitope-paratope interactions.	Bioinform.	2016	DBLP DOI BibTeX RDF
27	Marie-Amandine Laurent, Dominique Bonnier, Nathalie Théret, Pierre Tufféry, Gautier Moroy	In silico characterization of the interaction between LSKL peptide, a LAP-TGF-beta derived peptide, and ADAMTS1.	Comput. Biol. Chem.	2016	DBLP DOI BibTeX RDF
27	Amy M. Hurwitz, Wanzhi Huang, Robert L. Atmar, Timothy G. Palzkill	Deep Sequencing of Phage-Displayed Peptide Libraries Reveals Novel Peptide Motif that Detects Norovirus.	AMIA	2015	DBLP BibTeX RDF
27	Anna Maria Perna, Thomas Schmidt, Tim Fugmann, Nicole Tegtmeyer, Steffen Backert, Silja Wessler, Gisbert Schneider	Peptide lineup against Gram-negative bacterial infection - first-in-class peptide inhibitor of H. pylori HtrA.	J. Cheminformatics	2014	DBLP DOI BibTeX RDF
27	Arnab Bhattacherjee, Stefan Wallin	Exploring Protein-Peptide Binding Specificity through Computational Peptide Screening.	PLoS Comput. Biol.	2013	DBLP DOI BibTeX RDF
27	Chao Yang, Zengyou He, Can Yang 0002, Weichuan Yu	Peptide Reranking with Protein-Peptide Correspondence and Precursor Peak Intensity Information.	IEEE ACM Trans. Comput. Biol. Bioinform.	2012	DBLP DOI BibTeX RDF
27	Neil Dalchau, James Andrew Phillips, Leonard D. Goldstein, Mark Howarth, Luca Cardelli, Stephen Emmott, Tim Elliott, Joern M. Werner	A Peptide Filtering Relation Quantifies MHC Class I Peptide Optimization.	PLoS Comput. Biol.	2011	DBLP DOI BibTeX RDF
27	Guangshun Wang, Xia Li, Zhe Wang	APD2: the updated antimicrobial peptide database and its application in peptide design.	Nucleic Acids Res.	2009	DBLP DOI BibTeX RDF
27	Changyong Yu, Guoren Wang, Yuhai Zhao, Keming Mao, Junjie Wu, Wendan Zhai	Generating Peptide Sequence Tags for Peptide Identification via Tandem Mass Spectrometry.	BIBE	2009	DBLP DOI BibTeX RDF
27	Khar Heng Choo, Shoba Ranganathan	Flanking signal and mature peptide residues influence signal peptide cleavage.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
27	Khar Heng Choo, Joo Chuan Tong, Shoba Ranganathan	Modeling Escherichia coli signal peptidase complex with bound substrate: determinants in the mature peptide influencing signal peptide cleavage.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
27	Aaron A. Klammer, Sheila M. Reynolds, Jeff A. Bilmes, Michael J. MacCoss, William Stafford Noble	Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification.	ISMB	2008	DBLP DOI BibTeX RDF
27	Bobbie-Jo M. Webb-Robertson, Christopher S. Oehmen, William R. Cannon	Support Vector Machine Classification of Probability Models and Peptide Features for Improved Peptide Identification from Shotgun Proteomics.	ICMLA	2007	DBLP DOI BibTeX RDF
27	Tomer Hertz, Chen Yanover	PepDist: A New Framework for Protein-Peptide Binding Prediction based on Learning Peptide Distance Functions.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
27	Stewart T. Chang, Debashis Ghosh, Denise E. Kirschner, Jennifer J. Linderman	Peptide length-based prediction of peptide-MHC class II binding.	Bioinform.	2006	DBLP DOI BibTeX RDF
27	András Perczel, Ödön Farkas, Imre Jákli, Igor A. Topol, Imre G. Csizmadia	Peptide models. XXXIII. Extrapolation of low-level Hartree-Fock data of peptide conformation to large basis set SCF, MP2, DFT, and CCSD(T) results. The Ramachandran surface of alanine dipeptide computed at various levels of theory.	J. Comput. Chem.	2003	DBLP DOI BibTeX RDF