Search results for "Phosphorylation"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
199	Jianjiong Gao, Ganesh Kumar Agrawal, Jay J. Thelen, Zoran Obradovic, A. Keith Dunker, Dong Xu 0002	A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants.	BICoB	2009	DBLP DOI BibTeX RDF	Protein Phosphorylation, Phosphoproteomics, Arabidopsis, Protein Disorder, SVM, KNN
162	Kunpeng Zhang, Yun Xu, Yifei Shen, Guoliang Chen 0001	Using a Neural Networking Method to Predict the Protein Phosphorylation Sites with Specific Kinase.	ISNN (2)	2006	DBLP DOI BibTeX RDF	phosphorylation site predicting, protein kinase, PKA, IKK, Neural Network, protein structure
132	Tingting Li, Hu Fu, Xuegong Zhang	Prediction of Kinase-Specific Phosphorylation Sites by One-Class SVMs.	BIBM	2007	DBLP DOI BibTeX RDF
95	Jun Jiang, Horace Ho-Shing Ip	Active learning for the prediction of phosphorylation sites.	IJCNN	2008	DBLP DOI BibTeX RDF
76	Zhiwen Yu 0002, Zhongkai Deng, Hau-San Wong	Identification of phosphorylation sites using a hybrid classifier ensemble approach.	ICPR	2008	DBLP DOI BibTeX RDF
67	Poorvi Kaushik, Fredric Gorin, Shireen Vali	Dynamics of tyrosine hydroxylase mediated regulation of dopamine synthesis.	J. Comput. Neurosci.	2007	DBLP DOI BibTeX RDF	Tyrosine hydroxylase, Dopamine biosynthesis, Phosphorylation, Iron, Alpha synuclein, Parkinson's disease, Kinetic model
57	Paul D. Yoo, Yung Shwen Ho, Bing Bing Zhou, Albert Y. Zomaya	Adaptive Locality-Effective Kernel Machine for protein phosphorylation site prediction.	IPDPS	2008	DBLP DOI BibTeX RDF
57	Jian-Qin Liu, Katsunori Shimohara	Biomolecular Computing by Encoding of Regulated Phosphorylation-Dephosphorylation and Logic of Kinase-Phosphatase in Cells.	DNA	2003	DBLP DOI BibTeX RDF
39	Xinyun Guo, Huan He, Jialin Yu, Shaoping Shi 0001	PKSPS: a novel method for predicting kinase of specific phosphorylation sites based on maximum weighted bipartite matching algorithm and phosphorylation sequence enrichment analysis.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
39	Karlla Ribeiro-Mason	H3S10P, phosphorylation de l'histone H3 sur la sérine 10 dans l'embryon préimplantatoire de souris. (H3S10P, phosphorylation at Ser10 in mouse preimplantation embryos).		2011	RDF
39	Pawel Durek, Christian Schudoma, Wolfram Weckwerth, Joachim Selbig, Dirk Walther 0001	Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
39	Joshua L. Heazlewood, Pawel Durek, Jan Hummel, Joachim Selbig, Wolfram Weckwerth, Dirk Walther 0001, Waltraud X. Schulze	PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor.	Nucleic Acids Res.	2008	DBLP DOI BibTeX RDF
38	Jian-Qin Liu, Katsunori Shimohara	On Scalable Biomolecular Computers Based on Crosstalked Phosphorylation and Dephosphorylation Pathways Regulated by Rho Family GTPases of Cells.	ICMENS	2004	DBLP DOI BibTeX RDF	Nanobiomachine, signaling pathways of living cells, Rho family GTPase, biomolecular computer
38	Zhenhua Guo, John W. Stiller	Comparative Genomics of Cyclin-Dependent Kinases Suggest Co-Evolution of the RNAP II C-Terminal Domain and CTD-Directed CDKs.	CSB	2004	DBLP DOI BibTeX RDF
29	Marylens Hernandez, Alexander Lachmann, Shan Zhao, Kunhong Xiao, Avi Ma'ayan	Inferring the Sign of Kinase-Substrate Interactions by Combining Quantitative Phosphoproteomics with a Literature-Based Mammalian Kinome Network.	BIBE	2010	DBLP DOI BibTeX RDF	protein phosphorylation, sign inference, systems biology, network analysis
20	Xulin Chang, Yafei Zhu, Yu Chen, Lei Li 0013	DeepNphos: A deep-learning architecture for prediction of N-phosphorylation sites.	Comput. Biol. Medicine	2024	DBLP DOI BibTeX RDF
20	Palistha Shrestha, Jeevan Kandel, Hilal Tayara, Kil To Chong 0001	DL-SPhos: Prediction of serine phosphorylation sites using transformer language model.	Comput. Biol. Medicine	2024	DBLP DOI BibTeX RDF
20	Renfei Ma, Shangfu Li, Wenshuo Li, Lantian Yao, Hsien-Da Huang, Tzong-Yi Lee	KinasePhos 3.0: Redesign and Expansion of the Prediction on Kinase-specific Phosphorylation Sites.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
20	Elisenda Feliu, Nidhi Kaihnsa, Timo de Wolff, Oguzhan Yürük	Parameter Region for Multistationarity in \({\boldsymbol{n-}}\)Site Phosphorylation Networks.	SIAM J. Appl. Dyn. Syst.	2023	DBLP DOI BibTeX RDF
20	Jean-Pierre Mazat	The metabolic control theory: Its development and its application to mitochondrial oxidative phosphorylation.	Biosyst.	2023	DBLP DOI BibTeX RDF
20	Viet Hoang Man, Xibing He, Fengyang Han, Lianjin Cai, Luxuan Wang, Taoyu Niu, Jingchen Zhai, Beihong Ji, Jie Gao, Junmei Wang	Phosphorylation at Ser289 Enhances the Oligomerization of Tau Repeat R2.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
20	Ge Song, Bozitao Zhong, Bo Zhang, Ashfaq Ur Rehman, Hai-Feng Chen	Phosphorylation Modification Force Field FB18CMAP Improving Conformation Sampling of Phosphoproteins.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
20	Jingxin Xie, Lijun Quan, Xuejiao Wang, Hongjie Wu, Zhi Jin, Deng Pan, Taoning Chen, Tingfang Wu, Qiang Lyu	DeepMPSF: A Deep Learning Network for Predicting General Protein Phosphorylation Sites Based on Multiple Protein Sequence Features.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
20	Xiaokun Hong, Kaiyuan Song, Mueed Ur Rahman, Ting Wei, Yan Zhang, Lin-Tai Da, Hai-Feng Chen	Phosphorylation Regulation Mechanism of β2 Integrin for the Binding of Filamin Revealed by Markov State Model.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
20	Nhat Truong Pham, Le Thi Phan, Jimin Seo, Yeonwoo Kim, Minkyung Song, Sukchan Lee, Young-Jun Jeon, Balachandran Manavalan	Advancing the accuracy of SARS-CoV-2 phosphorylation site detection via meta-learning approach.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Ming-Xiao Zhao, Qiang Chen, Fulai Li, Songsen Fu, Biling Huang, Yufen Zhao	Protein phosphorylation database and prediction tools.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Renfei Ma, Shangfu Li, Luca Parisi, Wenshuo Li, Hsien-Da Huang, Tzong-Yi Lee	Holistic similarity-based prediction of phosphorylation sites for understudied kinases.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Miaomiao Chen, Weizhi Zhang, Yujie Gou, Danyang Xu, Yuxiang Wei 0005, Dan Liu, Cheng Han, Xinhe Huang, Chengzhi Li, Wanshan Ning, Di Peng, Yu Xue 0001	GPS 6.0: an updated server for prediction of kinase-specific phosphorylation sites in proteins.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
20	Shihu Jiao, Xiucai Ye, Chunyan Ao, Tetsuya Sakurai, Quan Zou 0001, Lei Xu	Adaptive learning embedding features to improve the predictive performance of SARS-CoV-2 phosphorylation sites.	Bioinform.	2023	DBLP DOI BibTeX RDF
20	Zhongliang Zhou, Wayland Yeung, Nathan Gravel, Mariah Salcedo, Saber Soleymani, Sheng Li 0001, Natarajan Kannan	Phosformer: an explainable transformer model for protein kinase-specific phosphorylation predictions.	Bioinform.	2023	DBLP DOI BibTeX RDF
20	Ziyang Xu, Haitian Zhong	PTransIPs: Identification of phosphorylation sites based on protein pretrained language model and Transformer.	CoRR	2023	DBLP DOI BibTeX RDF
20	Minghui Wang, Lu Yan, Jihua Jia, Jiali Lai, Hongyan Zhou, Bin Yu 0007	DE-MHAIPs: Identification of SARS-CoV-2 phosphorylation sites based on differential evolution multi-feature learning and multi-head attention mechanism.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
20	Chao Wang 0043, Qiang Yang	ScerePhoSite: An interpretable method for identifying fungal phosphorylation sites in proteins using sequence-based features.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
20	Karen E. Ross, Guolin Zhang, Cuneyt Akcora, Yu Lin, Bin Fang, John M. Koomen, Eric B. Haura, Mark Grimes	Network models of protein phosphorylation, acetylation, and ubiquitination connect metabolic and cell signaling pathways in lung cancer.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
20	Jian Zhao 0034, Minhui Zhuang, Jingjing Liu, Meng Zhang, Cong Zeng, Bin Jiang 0001, Jing Wu, Xiaofeng Song	pHisPred: a tool for the identification of histidine phosphorylation sites by integrating amino acid patterns and properties.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
20	Yongjian Zang, He Wang 0015, Dongxiao Hao, Ying Kang, Jianwen Zhang, Xuhua Li, Lei Zhang 0180, Zhiwei Yang 0003, Shengli Zhang	p38α Kinase Auto-Activation through Its Conformational Transition Induced by Tyr323 Phosphorylation.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
20	Fei Zhu, Sijie Yang, Fanwang Meng, Yuxiang Zheng, Xin Ku, Cheng Luo, Guang Hu, Zhongjie Liang	Leveraging Protein Dynamics to Identify Functional Phosphorylation Sites using Deep Learning Models.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
20	Iris N. Smith, Jennifer E. Dawson, James Krieger, Stetson Thacker, Ivet Bahar, Charis Eng	Structural and Dynamic Effects of PTEN C-Terminal Tail Phosphorylation.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
20	Zenghui Lao, Xuewei Dong, Xianshi Liu, Fangying Li, Yujie Chen, Yiming Tang 0005, Guanghong Wei	Insights into the Atomistic Mechanisms of Phosphorylation in Disrupting Liquid-Liquid Phase Separation and Aggregation of the FUS Low-Complexity Domain.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
20	Wanqian Dong, Rui Zhou, Jiawen Chen, Zhengyu Shu, Mojie Duan	Phosphorylation Regulation on the Homo-Dimeric Binding of Transactive Response DNA-Binding Protein.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
20	Elham Khalili, Shahin Ramazi, Faezeh Ghanati, Samaneh Kouchaki	Predicting protein phosphorylation sites in soybean using interpretable deep tabular learning network.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
20	Priya Gupta, Sureshkumar Venkadesan, Debasisa Mohanty	Pf-Phospho: a machine learning-based phosphorylation sites prediction tool for Plasmodium proteins.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
20	Harumi Kagiwada, Chie Motono, Katsuhisa Horimoto, Kazuhiko Fukui	Phosprof: pathway analysis database of drug response based on phosphorylation activity measurements.	Database J. Biol. Databases Curation	2022	DBLP DOI BibTeX RDF
20	Kathryn E. Kirchoff, Shawn M. Gomez	EMBER: multi-label prediction of kinase-substrate phosphorylation events through deep learning.	Bioinform.	2022	DBLP DOI BibTeX RDF
20	Marzieh Ayati, Serhan Yilmaz, Mark R. Chance, Mehmet Koyutürk	Functional characterization of co-phosphorylation networks.	Bioinform.	2022	DBLP DOI BibTeX RDF
20	Yanjiao Zeng, Dongning Liu, Yang Wang	Identification of phosphorylation site using S-padding strategy based convolutional neural network.	Health Inf. Sci. Syst.	2022	DBLP DOI BibTeX RDF
20	Chia-Hung Hsu, Ya-Jyun Chen, Chia-Ning Yang	An order-to-disorder structural switch regulates HIF-1 transcription through S247 phosphorylation in the HIF1α PAS-B domain.	Comput. Biol. Medicine	2022	DBLP DOI BibTeX RDF
20	Semen V. Nesterov, Lev S. Yaguzhinsky, Raif G. Vasilov, Vasiliy N. Kadantsev, Alexey N. Goltsov	Contribution of the Collective Excitations to the Coupled Proton and Energy Transport along Mitochondrial Cristae Membrane in Oxidative Phosphorylation System.	Entropy	2022	DBLP DOI BibTeX RDF
20	María Hernández Mesa, Jonas van den Brink, William E. Louch, Kimberly J. McCabe, Padmini Rangamani	Nanoscale organization of ryanodine receptor distribution and phosphorylation pattern determines the dynamics of calcium sparks.	PLoS Comput. Biol.	2022	DBLP DOI BibTeX RDF
20	Yanchun Zeng, Yuzi Li, Lambert Yan	Prediction of Phosphorylation Sites in Amino Acid Sequences Using Convolutional Neural Networks.	ISAIMS	2022	DBLP DOI BibTeX RDF
20	Xing-Xing Shi, Feng-Xu Wu, Long-Can Mei, Yu-Liang Wang, Ge-Fei Hao, Guangfu Yang	Bioinformatics toolbox for exploring protein phosphorylation network.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
20	Shaofeng Lin, Chenwei Wang, Jiaqi Zhou 0003, Ying Shi, Chen Ruan, Yiran Tu, Lan Yao, Di Peng, Yu Xue 0001	EPSD: a well-annotated data resource of protein phosphorylation sites in eukaryotes.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
20	Marzieh Ayati, Mark R. Chance, Mehmet Koyutürk	Co-phosphorylation networks reveal subtype-specific signaling modules in breast cancer.	Bioinform.	2021	DBLP DOI BibTeX RDF
20	Zheng-Chang Lu, Fan Jiang, Yun-Dong Wu	Phosphate binding sites prediction in phosphorylation-dependent protein-protein interactions.	Bioinform.	2021	DBLP DOI BibTeX RDF
20	Hangyuan Yang, Minghui Wang, Xia Liu, Xing-Ming Zhao, Ao Li 0001	PhosIDN: an integrated deep neural network for improving protein phosphorylation site prediction by combining sequence and protein-protein interaction information.	Bioinform.	2021	DBLP DOI BibTeX RDF
20	Farzaneh Esmaili, Mahdi Pourmirzaei, Shahin Ramazi, Elham Yavari	A Brief Review of Machine Learning Techniques for Protein Phosphorylation Sites Prediction.	CoRR	2021	DBLP BibTeX RDF
20	Fan Jin, Frauke Gräter	How multisite phosphorylation impacts the conformations of intrinsically disordered proteins.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
20	Chenwei Wang, Hao-Dong Xu, Shaofeng Lin, Wankun Deng, Jiaqi Zhou 0003, Ying Zhang 0052, Ying Shi, Di Peng, Yu Xue 0001	GPS 5.0: An Update on the Prediction of Kinase-specific Phosphorylation Sites in Proteins.	Genom. Proteom. Bioinform.	2020	DBLP DOI BibTeX RDF
20	Miguel Angel Freire	Phosphorylation and acylation transfer reactions: Clues to a dual origin of metabolism.	Biosyst.	2020	DBLP DOI BibTeX RDF
20	Jinling Liu, Xiaojun Ma, Gregory F. Cooper, Xinghua Lu	Explicit representation of protein activity states significantly improves causal discovery of protein phosphorylation networks.	BMC Bioinform.	2020	DBLP DOI BibTeX RDF
20	Zhou Fang, Bayu Jayawardhana, Arjan van der Schaft, Chuanhou Gao	Adaptation Mechanisms in Phosphorylation Cycles By Allosteric Binding and Gene Autoregulation.	IEEE Trans. Autom. Control.	2020	DBLP DOI BibTeX RDF
20	Man Cao, Guodong Chen, Jialin Yu, Shaoping Shi 0001	Computational prediction and analysis of species-specific fungi phosphorylation via feature optimization strategy.	Briefings Bioinform.	2020	DBLP DOI BibTeX RDF
20	Zhen Chen 0009, Pei Zhao, Fuyi Li, André Leier, Tatiana T. Marquez-Lago, Geoffrey I. Webb, Abdelkader Baggag, Halima Bensmail, Jiangning Song	PROSPECT: A web server for predicting protein histidine phosphorylation sites.	J. Bioinform. Comput. Biol.	2020	DBLP DOI BibTeX RDF
20	Vijay Kumar Bhardwaj, Rahul Singh, Jatin Sharma, Pralay Das, Rituraj Purohit	Structural based study to identify new potential inhibitors for dual specificity tyrosine-phosphorylation- regulated kinase.	Comput. Methods Programs Biomed.	2020	DBLP DOI BibTeX RDF
20	Ying Xu, Campbell Wilson, André Leier, Tatiana T. Marquez-Lago, James C. Whisstock, Jiangning Song	PhosTransfer: A Deep Transfer Learning Framework for Kinase-Specific Phosphorylation Site Prediction in Hierarchy.	PAKDD (2)	2020	DBLP DOI BibTeX RDF
20	Shi-Hao Li, Jun Zhang, Ya-Wei Zhao, Fu-Ying Dao, Hui Ding 0005, Wei Chen 0064, Hua Tang	iPhoPred: A Predictor for Identifying Phosphorylation Sites in Human Protein.	IEEE Access	2019	DBLP DOI BibTeX RDF
20	Debangana Chakravorty, Krishnendu Banerjee, Tarunendu Mapder, Sudipto Saha	In silico modeling of phosphorylation dependent and independent c-Myc degradation.	BMC Bioinform.	2019	DBLP DOI BibTeX RDF
20	Martin Kulke, Myriam Uhrhan, Norman Geist, Dorothea Brüggemann, Bastian Ohler, Walter Langel, Susan Köppen	Phosphorylation of Fibronectin Influences the Structural Stability of the Predicted Interchain Domain.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
20	Kai Yu 0011, Qingfeng Zhang, Zekun Liu, Qi Zhao, Xiaolong Zhang, Yan Wang, Zi-Xian Wang, Ying Jin, Xiaoxing Li, Zexian Liu, Rui-Hua Xu	qPhos: a database of protein phosphorylation dynamics in humans.	Nucleic Acids Res.	2019	DBLP DOI BibTeX RDF
20	Luca Parca, Bruno Ariano, Andrea Cabibbo, Marco Paoletti, Annalaura Tamburrini, Antonio Palmeri, Gabriele Ausiello, Manuela Helmer-Citterich	Kinome-wide identification of phosphorylation networks in eukaryotic proteomes.	Bioinform.	2019	DBLP DOI BibTeX RDF
20	Emilio Fenoy, José M. G. Izarzugaza, Vanessa Isabell Jurtz, Søren Brunak, Morten Nielsen 0001	A generic deep convolutional neural network framework for prediction of receptor-ligand interactions - NetPhosPan: application to kinase phosphorylation prediction.	Bioinform.	2019	DBLP DOI BibTeX RDF
20	Fenglin Luo, Minghui Wang, Yu Liu, Xing-Ming Zhao, Ao Li 0001	DeepPhos: prediction of protein phosphorylation sites with deep learning.	Bioinform.	2019	DBLP DOI BibTeX RDF
20	Panagiota Angeliki Galliou, Kleio-Maria Verrou, George Koliakos	Phosphorylation mapping of laminin α1-chain: Kinases in association with active sites.	Comput. Biol. Chem.	2019	DBLP DOI BibTeX RDF
20	Marzieh Ayati, Danica Wiredja, Daniela Schlatzer, Sean Maxwell, Ming Li 0022, Mehmet Koyutürk, Mark R. Chance	CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis.	PLoS Comput. Biol.	2019	DBLP DOI BibTeX RDF
20	Alessandro Pandini, Howard Schulman, Shahid Khan 0005	Conformational coupling by trans-phosphorylation in calcium calmodulin dependent kinase II.	PLoS Comput. Biol.	2019	DBLP DOI BibTeX RDF
20	Favorisen Rosyking Lumbanraja, Bharuno Mahesworo, Tjeng Wawan Cenggoro, Arif Budiarto, Bens Pardamean	An Evaluation of Deep Neural Network Performance on Limited Protein Phosphorylation Site Prediction Data.	ICCSCI	2019	DBLP DOI BibTeX RDF
20	Marzieh Ayati, Danica Wiredja, Daniela Schlatzer, Sean Maxwell, Ming Li 0022, Mehmet Koyutürk, Mark R. Chance	CoPhosK: A Method for Comprehensive Kinase Substrate Annotation using Co-phosphorylation Analysis.	BCB	2019	DBLP DOI BibTeX RDF
20	Fuyi Li, Chen Li 0021, Tatiana T. Marquez-Lago, André Leier, Tatsuya Akutsu, Anthony W. Purcell, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, Jiangning Song, Kuo-Chen Chou	Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome.	Bioinform.	2018	DBLP DOI BibTeX RDF
20	Kaixi Tang, Colton G. Boudreau, Claire M. Brown, Anmar Khadra	Paxillin phosphorylation at serine 273 and its effects on Rac, Rho and adhesion dynamics.	PLoS Comput. Biol.	2018	DBLP DOI BibTeX RDF
20	Kalpana Raja, Jeyakumar Natarajan	Mining protein phosphorylation information from biomedical literature using NLP parsing and Support Vector Machines.	Comput. Methods Programs Biomed.	2018	DBLP DOI BibTeX RDF
20	Duolin Wang, Shuai Zeng, Chunhui Xu, Wangren Qiu, Yanchun Liang 0001, Trupti Joshi, Dong Xu 0002	MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction.	Bioinform.	2017	DBLP DOI BibTeX RDF
20	Ralph Patrick, Bostjan Kobe, Kim-Anh Lê Cao, Mikael Bodén	PhosphoPICK-SNP: quantifying the effect of amino acid variants on protein phosphorylation.	Bioinform.	2017	DBLP DOI BibTeX RDF
20	Yu Chen, Yonghong Wang, Jens Nielsen	Systematic inference of functional phosphorylation events in yeast metabolism.	Bioinform.	2017	DBLP DOI BibTeX RDF
20	Ying Li, Xueya Zhou, Zichao Zhai, Tingting Li	Co-occurring protein phosphorylation are functionally associated.	PLoS Comput. Biol.	2017	DBLP DOI BibTeX RDF
20	Matthew J. Betts, Oliver Wichmann, Mathias Utz, Timon Andre, Evangelia Petsalaki, Pablo Minguez, Luca Parca, Frederick P. Roth, Anne-Claude Gavin, Peer Bork, Robert B. Russell	Systematic identification of phosphorylation-mediated protein interaction switches.	PLoS Comput. Biol.	2017	DBLP DOI BibTeX RDF
20	Ryan J. Golden, Beibei Chen, Tuo Li, Juliane Braun, Hema Manjunath, Xiang Chen, Jiaxi Wu, Vanessa Schmid, Tsung-Cheng Chang, Florian Kopp, Andres Ramirez-Martinez, Vincent S. Tagliabracci, Zhijian Chen, Yang Xie, Joshua T. Mendell	An Argonaute phosphorylation cycle promotes microRNA-mediated silencing.	Nat.	2017	DBLP DOI BibTeX RDF
20	Zhou Fang, Bayu Jayawardhana, Arjan van der Schaft, Chuanhou Gao	Integral regulation mechanism in phosphorylation cycles.	CDC	2017	DBLP DOI BibTeX RDF
20	Qiuming Yao, Jianjiong Gao, Dong Xu 0002	Musite: Tool for Predicting Protein Phosphorylation Sites.	Encyclopedia of Algorithms	2016	DBLP DOI BibTeX RDF
20	Xiaoyi Xu, Minghui Wang	Inferring Disease Associated Phosphorylation Sites via Random Walk on Multi-Layer Heterogeneous Network.	IEEE ACM Trans. Comput. Biol. Bioinform.	2016	DBLP DOI BibTeX RDF
20	Federica Chiappori, Luca Mattiazzi, Luciano Milanesi, Ivan Merelli	A novel molecular dynamics approach to evaluate the effect of phosphorylation on multimeric protein interface: the αB-Crystallin case study.	BMC Bioinform.	2016	DBLP DOI BibTeX RDF
20	Andrew R. Gallimore, A. Radu Aricescu, Michisuke Yuzaki, Radu Calinescu	A Computational Model for the AMPA Receptor Phosphorylation Master Switch Regulating Cerebellar Long-Term Depression.	PLoS Comput. Biol.	2016	DBLP DOI BibTeX RDF
20	Peter Rashkov, Ian P. Barrett, Robert E. Beardmore, Claus Bendtsen, Ivana Gudelj	Kinase Inhibition Leads to Hormesis in a Dual Phosphorylation-Dephosphorylation Cycle.	PLoS Comput. Biol.	2016	DBLP DOI BibTeX RDF
20	Dan Tian, Isaiah Mitchell, Pamela K. Kreeger	Quantitative analysis of insulin-like growth factor 2 receptor and insulin-like growth factor binding proteins to identify control mechanisms for insulin-like growth factor 1 receptor phosphorylation.	BMC Syst. Biol.	2016	DBLP DOI BibTeX RDF
20	Zrinka Raguz Nakic, Gerhard Seisenbacher, Francesc Posas, Uwe Sauer	Untargeted metabolomics unravels functionalities of phosphorylation sites in Saccharomyces cerevisiae.	BMC Syst. Biol.	2016	DBLP DOI BibTeX RDF
20	Rushina Shah, Domitilla Del Vecchio	An N-stage cascade of phosphorylation cycles as an insulation device for synthetic biological circuits.	ECC	2016	DBLP DOI BibTeX RDF
20	Han Yu, Yaou Zhao, Shi-Yuan Han, Yuehui Chen, Wenxing He, Likai Dong	Construction of Protein Phosphorylation Network Based on Boolean Network Methods Using Proteomics Data.	ICIC (1)	2016	DBLP DOI BibTeX RDF
20	Ruizhi Han, Dong Wang 0021, Yuehui Chen, Wenzheng Bao, Qianqian Zhang, Hanhan Cong	Prediction of Phosphorylation Sites Using PSO-ANNs.	ICIC (1)	2016	DBLP DOI BibTeX RDF
20	Hitomi Sano, Yasuhiro Naito, Masaru Tomita	Simulation Study on the Balance of Glycolytic ATP Production and Oxidative Phosphorylation in Embryonic and Adult Ventricular Cells. (PDF / PS)	CinC	2016	DBLP BibTeX RDF
20	Marzieh Ayati, Danica Wiredja, Daniela Schlatzer, Goutham Narla, Mark R. Chance, Mehmet Koyutürk	MoBaS on Phosphorylation Data.	BCB	2016	DBLP DOI BibTeX RDF
20	Manabu Torii, Cecilia N. Arighi, Gang Li 0021, Qinghua Wang 0003, Cathy H. Wu, K. Vijay-Shanker	RLIMS-P 2.0: A Generalizable Rule-Based Information Extraction System for Literature Mining of Protein Phosphorylation Information.	IEEE ACM Trans. Comput. Biol. Bioinform.	2015	DBLP DOI BibTeX RDF