Search results for "Phylogenomics"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
64	David Burstein, Igor Ulitsky, Tamir Tuller, Benny Chor	Information Theoretic Approaches to Whole Genome Phylogenies.	RECOMB	2005	DBLP DOI BibTeX RDF	Phylogenomics, whole genome and proteom phylogenetic, tree reconstruction, Kullback-Leibler relative entropy, divergence, distance matrix
55	Laila A. Nahum, Sergio L. Pereira	Phylogenomics, Protein Family Evolution, and the Tree of Life: An Integrated Approach between Molecular Evolution and Computational Intelligence.	Applications of Computational Intelligence in Biology	2008	DBLP DOI BibTeX RDF
28	Nikolaos Alachiotis 0001, Euripides Sotiriades, Apostolos Dollas, Alexandros Stamatakis	Exploring FPGAs for accelerating the phylogenetic likelihood function.	IPDPS	2009	DBLP DOI BibTeX RDF
27	Samson Weiner, Yutian Feng, J. Peter Gogarten, Mukul S. Bansal	Assessing the Potential of Gene Tree Parsimony for Microbial Phylogenomics.	RECOMB-CG	2024	DBLP DOI BibTeX RDF
27	Edward L. Braun	Phylogenomics using Compression Distances: Incorporating Rate Heterogeneity and Amino Acid Properties.	BCB	2023	DBLP DOI BibTeX RDF
27	Eef M. Jonkheer, Dirk-Jan M. van Workum, Siavash Sheikhizadeh Anari, Balázs Brankovics, Jorn R. de Haan, Lidija Berke, Theo A. J. van der Lee, Dick de Ridder, Sandra Smit	PanTools v3: functional annotation, classification and phylogenomics.	Bioinform.	2022	DBLP DOI BibTeX RDF
27	Marius A. Dieckmann, Sebastian Beyvers, Rudel Christian Nkouamedjo-Fankep, Patrick Harald Georg Hanel, Lukas Jelonek, Jochen Blom, Alexander Goesmann	EDGAR3.0: comparative genomics and phylogenomics on a scalable infrastructure.	Nucleic Acids Res.	2021	DBLP DOI BibTeX RDF
27	Roland Wittler	Alignment- and reference-free phylogenomics with colored de Bruijn graphs.	Algorithms Mol. Biol.	2020	DBLP DOI BibTeX RDF
27	David Sankoff, Chunfang Zheng, Yue Zhang, Joao Meidanis, Eric Lyons 0002, Haibao Tang	Models for Similarity Distributions of Syntenic Homologs and Applications to Phylogenomics.	IEEE ACM Trans. Comput. Biol. Bioinform.	2019	DBLP DOI BibTeX RDF
27	Michael D. Lee 0002	GToTree: a user-friendly workflow for phylogenomics.	Bioinform.	2019	DBLP DOI BibTeX RDF
27	Roland Wittler	Alignment- and reference-free phylogenomics with colored de-Bruijn graphs.	CoRR	2019	DBLP BibTeX RDF
27	Chayan Roy, Utpal Bakshi, Moidu Jameela Rameez, Subhrangshu Mandal, Prabir Kumar Haldar, Prosenjit Pyne, Wriddhiman Ghosh	Phylogenomics of an uncultivated, aerobic and thermophilic, photoheterotrophic member of Chlorobia sheds light into the evolution of the phylum Chlorobi.	Comput. Biol. Chem.	2019	DBLP DOI BibTeX RDF
27	Roland Wittler	Alignment- and Reference-Free Phylogenomics with Colored de Bruijn Graphs.	WABI	2019	DBLP DOI BibTeX RDF
27	James B. Pease, Benjamin K. Rosenzweig	Encoding Data Using Biological Principles: The Multisample Variant Format for Phylogenomics and Population Genomics.	IEEE ACM Trans. Comput. Biol. Bioinform.	2018	DBLP DOI BibTeX RDF
27	Kwei Jun Tong	Investigating Evolutionary History Using Phylogenomics.		2018	RDF
27	Lionel Guy	phyloSkeleton: taxon selection, data retrieval and marker identification for phylogenomics.	Bioinform.	2017	DBLP DOI BibTeX RDF
27	Marc Hellmuth, Nicolas Wieseke, Marcus Lechner, Hans-Peter Lenhof, Martin Middendorf, Peter F. Stadler	Phylogenomics with Paralogs.	CoRR	2017	DBLP BibTeX RDF
27	Raúl Amado Cattáneo, Luis Diambra, Andrés Norman McCarthy	Phylogenomics of 42 tomato chloroplasts using assembly and alignment-free method.	PeerJ Prepr.	2017	DBLP DOI BibTeX RDF
27	Magdalena A. Machnicka, Katarzyna H. Kaminska, Stanislaw Dunin-Horkawicz, Janusz M. Bujnicki	Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes.	BMC Bioinform.	2015	DBLP DOI BibTeX RDF
27	Amir Szitenberg, Max John, Mark L. Blaxter, David H. Lunt	ReproPhylo: An Environment for Reproducible Phylogenomics.	PLoS Comput. Biol.	2015	DBLP DOI BibTeX RDF
27	Asis Hallab	Protein Function Prediction using Phylogenomics, Domain Architecture Analysis, Data Integration, and Lexical Scoring.		2015	RDF
27	Márcia Duarte, Ruy Jáuregui, Ramiro Vilchez-Vargas, Howard Junca, Dietmar H. Pieper	AromaDeg, a novel database for phylogenomics of aerobic bacterial degradation of aromatics.	Database J. Biol. Databases Curation	2014	DBLP DOI BibTeX RDF
27	Casey W. Dunn, Mark Howison, Felipe Zapata 0001	Agalma: an automated phylogenomics workflow.	BMC Bioinform.	2013	DBLP DOI BibTeX RDF
27	Yun Yu, Nikola Ristic, Luay Nakhleh	Fast algorithms and heuristics for phylogenomics under ILS and hybridization.	BMC Bioinform.	2013	DBLP DOI BibTeX RDF
27	Guy Baele, Philippe Lemey	Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency.	Bioinform.	2013	DBLP DOI BibTeX RDF
27	Malte Brinkmeyer	Polynomial supertree methods in phylogenomics : algorithms, simulations and software.		2013	RDF
27	Rubén Sánchez, François Serra, Joaquín Tárraga, Ignacio Medina, José Carbonell, Luis Pulido, Alejandro de María, Salvador Capella-Gutiérrez, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo	Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing.	Nucleic Acids Res.	2011	DBLP DOI BibTeX RDF
27	Vincent Ranwez, Alexis Criscuolo, Emmanuel J. P. Douzery	SUPERTRIPLETS: a triplet-based supertree approach to phylogenomics.	Bioinform.	2010	DBLP DOI BibTeX RDF
27	Jie Bai, Junrong Wang, Feng Xue, Jingsong Li, Lijing Bu, Junming Hu, Gang Xu, Qiyu Bao, Guoping Zhao, Xiaoming Ding, Jie Yan, Jinyu Wu	proTF: a comprehensive data and phylogenomics resource for prokaryotic transcription factors.	Bioinform.	2010	DBLP DOI BibTeX RDF
27	Kimmen Sjölander	Getting Started in Structural Phylogenomics.	PLoS Comput. Biol.	2010	DBLP DOI BibTeX RDF
27	Christine Kehyayan, Gregory Butler	Issues with the PipeAlign phylogenomics toolkit in identifying protein subfamilies.	CIBCB	2010	DBLP DOI BibTeX RDF
27	Fabian Schreiber, Kerstin Pick, Dirk Erpenbeck, Gert Wörheide, Burkhard Morgenstern	OrthoSelect: a protocol for selecting orthologous groups in phylogenomics.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
27	Virendra S. Gomase, Somnath Tagore	Phylogenomics: evolution and genomics intersection.	Int. J. Bioinform. Res. Appl.	2009	DBLP DOI BibTeX RDF
27	Céline Scornavacca	Supertree methods for phylogenomics. (Méthodes de superarbres pour la phylogénomique).		2009	RDF
27	Lior Pachter, Bernd Sturmfels	The Mathematics of Phylogenomics.	SIAM Rev.	2007	DBLP DOI BibTeX RDF
27	Joaquín Tárraga, Ignacio Medina, Leonardo Arbiza, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo	Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics.	Nucleic Acids Res.	2007	DBLP DOI BibTeX RDF
27	Yuying Tian, Allan W. Dickerman	GeneTrees: a phylogenomics resource for prokaryotes.	Nucleic Acids Res.	2007	DBLP DOI BibTeX RDF
27	Thomas M. Keane, Thomas J. Naughton, James O. McInerney	MultiPhyl: a high-throughput phylogenomics webserver using distributed computing.	Nucleic Acids Res.	2007	DBLP DOI BibTeX RDF
27	Jake Gunn Glanville, Dan Kirshner 0001, Nandini Krishnamurthy, Kimmen Sjölander	Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis.	Nucleic Acids Res.	2007	DBLP DOI BibTeX RDF
27	Zaky Adam, Monique Turmel, Claude Lemieux, David Sankoff	Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution.	J. Comput. Biol.	2007	DBLP DOI BibTeX RDF
27	Zaky Adam, Monique Turmel, Claude Lemieux, David Sankoff	Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution.	Comparative Genomics	2006	DBLP DOI BibTeX RDF
27	Alexis Criscuolo	Méthodes de distance pour l'inférence phylogénomique. (Distance-based methods for phylogenomics).		2006	RDF
27	Barbara E. Engelhardt, Michael I. Jordan, Kathryn E. Muratore, Steven E. Brenner	Protein Molecular Function Prediction by Bayesian Phylogenomics.	PLoS Comput. Biol.	2005	DBLP DOI BibTeX RDF
27	Hernán Dopazo, Javier Santoyo, Joaquín Dopazo	Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model species.	ISMB/ECCB (Supplement of Bioinformatics)	2004	DBLP DOI BibTeX RDF
27	Christian M. Zmasek, Sean R. Eddy	RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs.	BMC Bioinform.	2002	DBLP DOI BibTeX RDF
27	Roderic D. M. Page, J. A. Cotton	Vertebrate Phylogenomics: Reconciled Trees and Gene Duplications.	Pacific Symposium on Biocomputing	2002	DBLP BibTeX RDF