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Results
Found 46 publication records. Showing 46 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
64 | David Burstein, Igor Ulitsky, Tamir Tuller, Benny Chor |
Information Theoretic Approaches to Whole Genome Phylogenies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
RECOMB ![In: Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings, pp. 283-295, 2005, Springer, 3-540-25866-3. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
Phylogenomics, whole genome and proteom phylogenetic, tree reconstruction, Kullback-Leibler relative entropy, divergence, distance matrix |
55 | Laila A. Nahum, Sergio L. Pereira |
Phylogenomics, Protein Family Evolution, and the Tree of Life: An Integrated Approach between Molecular Evolution and Computational Intelligence. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Applications of Computational Intelligence in Biology ![In: Applications of Computational Intelligence in Biology: Current Trends and Open Problems, pp. 259-279, 2008, Springer, 978-3-540-78533-0. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
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28 | Nikolaos Alachiotis 0001, Euripides Sotiriades, Apostolos Dollas, Alexandros Stamatakis |
Exploring FPGAs for accelerating the phylogenetic likelihood function. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS ![In: 23rd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2009, Rome, Italy, May 23-29, 2009, pp. 1-8, 2009, IEEE. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
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27 | Samson Weiner, Yutian Feng, J. Peter Gogarten, Mukul S. Bansal |
Assessing the Potential of Gene Tree Parsimony for Microbial Phylogenomics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
RECOMB-CG ![In: Comparative Genomics - 21st International Conference, RECOMB-CG 2024, Boston, MA, USA, April 27-28, 2024, Proceedings, pp. 129-149, 2024, Springer, 978-3-031-58071-0. The full citation details ...](Pics/full.jpeg) |
2024 |
DBLP DOI BibTeX RDF |
|
27 | Edward L. Braun |
Phylogenomics using Compression Distances: Incorporating Rate Heterogeneity and Amino Acid Properties. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BCB ![In: Proceedings of the 14th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2023, Houston, TX, USA, September 3-6, 2023, pp. 46:1-46:6, 2023, ACM. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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27 | Eef M. Jonkheer, Dirk-Jan M. van Workum, Siavash Sheikhizadeh Anari, Balázs Brankovics, Jorn R. de Haan, Lidija Berke, Theo A. J. van der Lee, Dick de Ridder, Sandra Smit |
PanTools v3: functional annotation, classification and phylogenomics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(18), pp. 4403-4405, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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27 | Marius A. Dieckmann, Sebastian Beyvers, Rudel Christian Nkouamedjo-Fankep, Patrick Harald Georg Hanel, Lukas Jelonek, Jochen Blom, Alexander Goesmann |
EDGAR3.0: comparative genomics and phylogenomics on a scalable infrastructure. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 49(Webserver-Issue), pp. 185-192, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
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27 | Roland Wittler |
Alignment- and reference-free phylogenomics with colored de Bruijn graphs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Algorithms Mol. Biol. ![In: Algorithms Mol. Biol. 15(1), pp. 4, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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27 | David Sankoff, Chunfang Zheng, Yue Zhang, Joao Meidanis, Eric Lyons 0002, Haibao Tang |
Models for Similarity Distributions of Syntenic Homologs and Applications to Phylogenomics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE ACM Trans. Comput. Biol. Bioinform. ![In: IEEE ACM Trans. Comput. Biol. Bioinform. 16(3), pp. 727-737, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
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27 | Michael D. Lee 0002 |
GToTree: a user-friendly workflow for phylogenomics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 35(20), pp. 4162-4164, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
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27 | Roland Wittler |
Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/1905.04165, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP BibTeX RDF |
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27 | Chayan Roy, Utpal Bakshi, Moidu Jameela Rameez, Subhrangshu Mandal, Prabir Kumar Haldar, Prosenjit Pyne, Wriddhiman Ghosh |
Phylogenomics of an uncultivated, aerobic and thermophilic, photoheterotrophic member of Chlorobia sheds light into the evolution of the phylum Chlorobi. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Comput. Biol. Chem. ![In: Comput. Biol. Chem. 80, pp. 206-216, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
|
27 | Roland Wittler |
Alignment- and Reference-Free Phylogenomics with Colored de Bruijn Graphs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: 19th International Workshop on Algorithms in Bioinformatics, WABI 2019, September 8-10, 2019, Niagara Falls, NY, USA., pp. 2:1-2:14, 2019, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 978-3-95977-123-8. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
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27 | James B. Pease, Benjamin K. Rosenzweig |
Encoding Data Using Biological Principles: The Multisample Variant Format for Phylogenomics and Population Genomics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE ACM Trans. Comput. Biol. Bioinform. ![In: IEEE ACM Trans. Comput. Biol. Bioinform. 15(4), pp. 1231-1238, 2018. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
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27 | Kwei Jun Tong |
Investigating Evolutionary History Using Phylogenomics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
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2018 |
RDF |
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27 | Lionel Guy |
phyloSkeleton: taxon selection, data retrieval and marker identification for phylogenomics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 33(8), pp. 1230-1232, 2017. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
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27 | Marc Hellmuth, Nicolas Wieseke, Marcus Lechner, Hans-Peter Lenhof, Martin Middendorf, Peter F. Stadler |
Phylogenomics with Paralogs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/1712.06442, 2017. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP BibTeX RDF |
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27 | Raúl Amado Cattáneo, Luis Diambra, Andrés Norman McCarthy |
Phylogenomics of 42 tomato chloroplasts using assembly and alignment-free method. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PeerJ Prepr. ![In: PeerJ Prepr. 5, pp. e3271, 2017. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
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27 | Magdalena A. Machnicka, Katarzyna H. Kaminska, Stanislaw Dunin-Horkawicz, Janusz M. Bujnicki |
Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 16, pp. 336:1-336:16, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
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27 | Amir Szitenberg, Max John, Mark L. Blaxter, David H. Lunt |
ReproPhylo: An Environment for Reproducible Phylogenomics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PLoS Comput. Biol. ![In: PLoS Comput. Biol. 11(9), 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
27 | Asis Hallab |
Protein Function Prediction using Phylogenomics, Domain Architecture Analysis, Data Integration, and Lexical Scoring. ![Search on Bibsonomy](Pics/bibsonomy.png) |
|
2015 |
RDF |
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27 | Márcia Duarte, Ruy Jáuregui, Ramiro Vilchez-Vargas, Howard Junca, Dietmar H. Pieper |
AromaDeg, a novel database for phylogenomics of aerobic bacterial degradation of aromatics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Database J. Biol. Databases Curation ![In: Database J. Biol. Databases Curation 2014, 2014. The full citation details ...](Pics/full.jpeg) |
2014 |
DBLP DOI BibTeX RDF |
|
27 | Casey W. Dunn, Mark Howison, Felipe Zapata 0001 |
Agalma: an automated phylogenomics workflow. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 14, pp. 330, 2013. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP DOI BibTeX RDF |
|
27 | Yun Yu, Nikola Ristic, Luay Nakhleh |
Fast algorithms and heuristics for phylogenomics under ILS and hybridization. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 14(S-15), pp. S6, 2013. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP DOI BibTeX RDF |
|
27 | Guy Baele, Philippe Lemey |
Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 29(16), pp. 1970-1979, 2013. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP DOI BibTeX RDF |
|
27 | Malte Brinkmeyer |
Polynomial supertree methods in phylogenomics : algorithms, simulations and software. ![Search on Bibsonomy](Pics/bibsonomy.png) |
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2013 |
RDF |
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27 | Rubén Sánchez, François Serra, Joaquín Tárraga, Ignacio Medina, José Carbonell, Luis Pulido, Alejandro de María, Salvador Capella-Gutiérrez, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo |
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 39(Web-Server-Issue), pp. 470-474, 2011. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
|
27 | Vincent Ranwez, Alexis Criscuolo, Emmanuel J. P. Douzery |
SUPERTRIPLETS: a triplet-based supertree approach to phylogenomics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 26(12), pp. 115-123, 2010. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
|
27 | Jie Bai, Junrong Wang, Feng Xue, Jingsong Li, Lijing Bu, Junming Hu, Gang Xu, Qiyu Bao, Guoping Zhao, Xiaoming Ding, Jie Yan, Jinyu Wu |
proTF: a comprehensive data and phylogenomics resource for prokaryotic transcription factors. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 26(19), pp. 2493-2495, 2010. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
|
27 | Kimmen Sjölander |
Getting Started in Structural Phylogenomics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PLoS Comput. Biol. ![In: PLoS Comput. Biol. 6(1), 2010. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
|
27 | Christine Kehyayan, Gregory Butler |
Issues with the PipeAlign phylogenomics toolkit in identifying protein subfamilies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CIBCB ![In: Proceedings of the 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2010, Montreal, QC, Canada, May 2-5, 2010, pp. 1-6, 2010, IEEE, 978-1-4244-6766-2. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
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27 | Fabian Schreiber, Kerstin Pick, Dirk Erpenbeck, Gert Wörheide, Burkhard Morgenstern |
OrthoSelect: a protocol for selecting orthologous groups in phylogenomics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 10, 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
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27 | Virendra S. Gomase, Somnath Tagore |
Phylogenomics: evolution and genomics intersection. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Int. J. Bioinform. Res. Appl. ![In: Int. J. Bioinform. Res. Appl. 5(5), pp. 548-563, 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
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27 | Céline Scornavacca |
Supertree methods for phylogenomics. (Méthodes de superarbres pour la phylogénomique). ![Search on Bibsonomy](Pics/bibsonomy.png) |
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2009 |
RDF |
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27 | Lior Pachter, Bernd Sturmfels |
The Mathematics of Phylogenomics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SIAM Rev. ![In: SIAM Rev. 49(1), pp. 3-31, 2007. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
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27 | Joaquín Tárraga, Ignacio Medina, Leonardo Arbiza, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo |
Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 35(Web-Server-Issue), pp. 38-42, 2007. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
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27 | Yuying Tian, Allan W. Dickerman |
GeneTrees: a phylogenomics resource for prokaryotes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 35(Database-Issue), pp. 328-331, 2007. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
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27 | Thomas M. Keane, Thomas J. Naughton, James O. McInerney |
MultiPhyl: a high-throughput phylogenomics webserver using distributed computing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 35(Web-Server-Issue), pp. 33-37, 2007. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
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27 | Jake Gunn Glanville, Dan Kirshner 0001, Nandini Krishnamurthy, Kimmen Sjölander |
Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 35(Web-Server-Issue), pp. 27-32, 2007. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
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27 | Zaky Adam, Monique Turmel, Claude Lemieux, David Sankoff |
Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Biol. ![In: J. Comput. Biol. 14(4), pp. 436-445, 2007. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
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27 | Zaky Adam, Monique Turmel, Claude Lemieux, David Sankoff |
Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Comparative Genomics ![In: Comparative Genomics, RECOMB 2006 International Workshop, RCG 2006, Montreal, Canada, September 24-26, 2006, Proceedings, pp. 63-74, 2006, Springer, 3-540-44529-3. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
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27 | Alexis Criscuolo |
Méthodes de distance pour l'inférence phylogénomique. (Distance-based methods for phylogenomics). ![Search on Bibsonomy](Pics/bibsonomy.png) |
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2006 |
RDF |
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27 | Barbara E. Engelhardt, Michael I. Jordan, Kathryn E. Muratore, Steven E. Brenner |
Protein Molecular Function Prediction by Bayesian Phylogenomics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PLoS Comput. Biol. ![In: PLoS Comput. Biol. 1(5), 2005. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
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27 | Hernán Dopazo, Javier Santoyo, Joaquín Dopazo |
Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model species. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISMB/ECCB (Supplement of Bioinformatics) ![In: Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, Glasgow, UK, July 31-August 4, 2004, pp. 116-121, 2004. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
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27 | Christian M. Zmasek, Sean R. Eddy |
RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 3, pp. 14, 2002. The full citation details ...](Pics/full.jpeg) |
2002 |
DBLP DOI BibTeX RDF |
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27 | Roderic D. M. Page, J. A. Cotton |
Vertebrate Phylogenomics: Reconciled Trees and Gene Duplications. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Pacific Symposium on Biocomputing ![In: Proceedings of the 7th Pacific Symposium on Biocomputing, PSB 2002, Lihue, Hawaii, USA, January 3-7, 2002, pp. 536-547, 2002. The full citation details ...](Pics/full.jpeg) |
2002 |
DBLP BibTeX RDF |
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