Search results for "RAxML"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
156	Alexandros Stamatakis, Michael Ott 0001, Thomas Ludwig 0002	RAxML-OMP: An Efficient Program for Phylogenetic Inference on SMPs.	PaCT	2005	DBLP DOI BibTeX RDF
125	Alexandros Stamatakis, Filip Blagojevic, Dimitrios S. Nikolopoulos, Christos D. Antonopoulos	Exploring New Search Algorithms and Hardware for Phylogenetics: RAxML Meets the IBM Cell.	J. VLSI Signal Process.	2007	DBLP DOI BibTeX RDF	RAxML, IBM cell, maximum likelihood, phylogenetic inference
103	John H. Miller, Yan Fang Zheng	Large-Scale Simulation of Eukaryotic Cell Signaling Processes.	IPDPS	2004	DBLP DOI BibTeX RDF
103	Alexandros Stamatakis, Harald Meier, Thomas Ludwig 0002	New Fast and Accurate Heuristics for Inference of Large Phylogenetic Trees.	IPDPS	2004	DBLP DOI BibTeX RDF
94	Filip Blagojevic, Alexandros Stamatakis, Christos D. Antonopoulos, Dimitrios S. Nikolopoulos	RAxML-Cell: Parallel Phylogenetic Tree Inference on the Cell Broadband Engine.	IPDPS	2007	DBLP DOI BibTeX RDF
83	Zhihua Du, Zhen Ji	A New Algorithm for Reconstruction of Phylogenetic Tree.	AIRS	2008	DBLP DOI BibTeX RDF	DCM, divide-and-conquer, Phylogenetic tree
83	Alexandros Stamatakis	An Efficient Program for Phylogenetic Inference Using Simulated Annealing.	IPDPS	2005	DBLP DOI BibTeX RDF
83	Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier	Parallel Inference of a 10.000-Taxon Phylogeny with Maximum Likelihood.	Euro-Par	2004	DBLP DOI BibTeX RDF
72	Filip Blagojevic, Dimitrios S. Nikolopoulos, Alexandros Stamatakis, Christos D. Antonopoulos	Dynamic multigrain parallelization on the cell broadband engine.	PPoPP	2007	DBLP DOI BibTeX RDF	IBM-cell programming models, RAxML, process scheduling
62	Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier	A fast program for maximum likelihood-based inference of large phylogenetic trees.	SAC	2004	DBLP DOI BibTeX RDF	parallel & distributed computing, maximum likelihood, phylogenetic inference
51	Michael Ott 0001, Jaroslaw Zola, Alexandros Stamatakis, Srinivas Aluru	Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L.	SC	2007	DBLP DOI BibTeX RDF	IBM BlueGene/L, RAxML, maximum likelihood, phylogenetic inference
41	Z. Du, Alexandros Stamatakis, F. Lin, Usman Roshan, Luay Nakhleh	Parallel Divide-and-Conquer Phylogeny Reconstruction by Maximum Likelihood.	HPCC	2005	DBLP DOI BibTeX RDF
32	Dimitri Höhler, Wayne Pfeiffer, Vassilios Ioannidis, Heinz Stockinger, Alexandros Stamatakis	RAxML Grove: an empirical phylogenetic tree database.	Bioinform.	2022	DBLP DOI BibTeX RDF
32	Lukas Hübner, Alexey M. Kozlov, Demian Hespe, Peter Sanders 0001, Alexandros Stamatakis	Exploring parallel MPI fault tolerance mechanisms for phylogenetic inference with RAxML-NG.	Bioinform.	2021	DBLP DOI BibTeX RDF
32	Pavlos Malakonakis, Andreas Brokalakis, Nikolaos Alachiotis 0001, Euripides Sotiriades, Apostolos Dollas	Exploring Modern FPGA Platforms for Faster Phylogeny Reconstruction with RAxML.	BIBE	2020	DBLP DOI BibTeX RDF
32	Alexey M. Kozlov, Diego Darriba, Tomás Flouri, Benoit Morel, Alexandros Stamatakis	RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference.	Bioinform.	2019	DBLP DOI BibTeX RDF
32	Alexandros Stamatakis	RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.	Bioinform.	2014	DBLP DOI BibTeX RDF
32	Alexandros Stamatakis, Andre J. Aberer, Christian Goll, Stephen A. Smith, Simon A. Berger, Fernando Izquierdo-Carrasco	RAxML-Light: a tool for computing terabyte phylogenies.	Bioinform.	2012	DBLP DOI BibTeX RDF
32	Wayne Pfeiffer, Alexandros Stamatakis	Hybrid MPI/Pthreads parallelization of the RAxML phylogenetics code.	IPDPS Workshops	2010	DBLP DOI BibTeX RDF
32	Alexandros Stamatakis	RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.	Bioinform.	2006	DBLP DOI BibTeX RDF
32	Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier	RAxML-II: a program for sequential, parallel and distributed inference of large phylogenetic trees.	Concurr. Comput. Pract. Exp.	2005	DBLP DOI BibTeX RDF
32	Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier	RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees.	Bioinform.	2005	DBLP DOI BibTeX RDF
21	Filip Blagojevic, Costin Iancu, Katherine A. Yelick, Matthew Curtis-Maury, Dimitrios S. Nikolopoulos, Benjamin Rose	Scheduling dynamic parallelism on accelerators.	Conf. Computing Frontiers	2009	DBLP DOI BibTeX RDF	cooperative scheduling, cell be
21	Alexandros Stamatakis, Michael Ott 0001	Exploiting Fine-Grained Parallelism in the Phylogenetic Likelihood Function with MPI, Pthreads, and OpenMP: A Performance Study.	PRIB	2008	DBLP DOI BibTeX RDF
21	Alexandros Stamatakis	Phylogenetic models of rate heterogeneity: a high performance computing perspective.	IPDPS	2006	DBLP DOI BibTeX RDF
21	Maria Charalambous, Pedro Trancoso, Alexandros Stamatakis	Initial Experiences Porting a Bioinformatics Application to a Graphics Processor.	Panhellenic Conference on Informatics	2005	DBLP DOI BibTeX RDF