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Venues (Conferences, Journals, ...)
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GrowBag graphs for keyword ? (Num. hits/coverage)
Group by:
The graphs summarize 366 occurrences of 215 keywords
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Results
Found 5067 publication records. Showing 5066 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
136 | Yujin Lee, Wootaek Kim, Kyungsook Han |
New Representation and Algorithm for Drawing RNA Structure with Pseudoknots. ![Search on Bibsonomy](Pics/bibsonomy.png) |
DaWaK ![In: Data Warehousing and Knowledge Discovery, 4th International Conference, DaWaK 2002, Aix-en-Provence, France, September 4-6, 2002, Proceedings, pp. 191-201, 2002, Springer, 3-540-44123-9. The full citation details ...](Pics/full.jpeg) |
2002 |
DBLP DOI BibTeX RDF |
|
134 | Yasubumi Sakakibara, Kiyoshi Asai, Kengo Sato |
Stem Kernels for RNA Sequence Analyses. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIRD ![In: Bioinformatics Research and Development, First International Conference, BIRD 2007, Berlin, Germany, March 12-14, 2007, Proceedings, pp. 278-291, 2007, Springer, 978-3-540-71232-9. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
stem kernel, SVM, secondary structure, RNA, string kernel |
131 | Rojan Shrestha, Jisu Kim, Kyungsook Han |
Prediction of RNA-Binding Residues in Proteins Using the Interaction Propensities of Amino Acids and Nucleotides. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICIC (1) ![In: Advanced Intelligent Computing Theories and Applications. With Aspects of Theoretical and Methodological Issues, 4th International Conference on Intelligent Computing, ICIC 2008, Shanghai, China, September 15-18, 2008, Proceedings, pp. 114-121, 2008, Springer, 978-3-540-87440-9. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
RNA-binding residues, protein-RNA interactions, support vector machine |
116 | Namshik Han, Hyunwoo Kim, Kyungsook Han |
Computational Approach to Structural Analysis of Protein-RNA Complexes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
International Conference on Computational Science ![In: Computational Science - ICCS 2003, International Conference, Melbourne, Australia and St. Petersburg, Russia, June 2-4, 2003. Proceedings, Part III, pp. 140-150, 2003, Springer, 3-540-40196-2. The full citation details ...](Pics/full.jpeg) |
2003 |
DBLP DOI BibTeX RDF |
|
112 | Shu-Yun Le, Jacob V. Maizel Jr., Kaizhong Zhang |
An Algorithm for Detecting Homologues of Known Structured RNAs in Genomes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CSB ![In: 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2004, Stanford, CA, USA, August 16-19, 2004, pp. 300-310, 2004, IEEE Computer Society, 0-7695-2194-0. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
RNA structure similarity, homologous structural RNA search, pattern recognition |
107 | Can Alkan, Emre Karakoç, Joseph H. Nadeau, Süleyman Cenk Sahinalp, Kaizhong Zhang |
RNA-RNA Interaction Prediction and Antisense RNA Target Search. ![Search on Bibsonomy](Pics/bibsonomy.png) |
RECOMB ![In: Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings, pp. 152-171, 2005, Springer, 3-540-25866-3. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
|
107 | Vineet Bafna, Haixu Tang, Shaojie Zhang |
Consensus Folding of Unaligned RNA Sequences Revisited. ![Search on Bibsonomy](Pics/bibsonomy.png) |
RECOMB ![In: Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings, pp. 172-187, 2005, Springer, 3-540-25866-3. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
|
107 | Xuezheng Fu, Hao Wang, William L. Harrison, Robert W. Harrison |
RNA Pseudoknot Prediction Using Term Rewriting. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBE ![In: Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 19-21 October 2005, Minneapolis, MN, USA, pp. 169-176, 2005, IEEE Computer Society, 0-7695-2476-1. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
|
107 | Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara |
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CSB ![In: 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2004, Stanford, CA, USA, August 16-19, 2004, pp. 290-299, 2004, IEEE Computer Society, 0-7695-2194-0. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
|
102 | Xiaoyong Fang, Zhigang Luo, Zhenghua Wang, Bo Yuan, Jinlong Shi |
A Seed-Based Method for Predicting Common Secondary Structures in Unaligned RNA Sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
MDAI ![In: Modeling Decisions for Artificial Intelligence, 4th International Conference, MDAI 2007, Kitakyushu, Japan, August 16-18, 2007, Proceedings, pp. 403-413, 2007, Springer, 978-3-540-73728-5. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
seed-based, unaligned RNA sequences, RNA secondary structure |
97 | Yelena Frid, Dan Gusfield |
A Simple, Practical and Complete O(\fracn3 logn)O(\frac{n^3}{ \log n})-Time Algorithm for RNA Folding Using the Four-Russians Speedup. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: Algorithms in Bioinformatics, 9th International Workshop, WABI 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings, pp. 97-107, 2009, Springer, 978-3-642-04240-9. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
97 | Can Alkan, Emre Karakoç, Süleyman Cenk Sahinalp, Peter J. Unrau, H. Alexander Ebhardt, Kaizhong Zhang, Jeremy Buhler |
RNA Secondary Structure Prediction Via Energy Density Minimization. ![Search on Bibsonomy](Pics/bibsonomy.png) |
RECOMB ![In: Research in Computational Molecular Biology, 10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006, Proceedings, pp. 130-142, 2006, Springer, 3-540-33295-2. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
95 | Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fangfang Pan, Liming Cai |
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CSB ![In: Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2005, Stanford, CA, USA, August 8-11, 2005, pp. 223-234, 2005, IEEE Computer Society, 0-7695-2344-7. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
RNA secondary structure profiling, Pseudo-knot search, Covariance model, Tree decomposition |
87 | Daeho Lim, Kyungsook Han |
Mining RNA Structure Elements from the Structure Data of Protein-RNA Complexes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Discovery Science ![In: Discovery Science, 6th International Conference, DS 2003, Sapporo, Japan, October 17-19,2003, Proceedings, pp. 352-359, 2003, Springer, 3-540-20293-5. The full citation details ...](Pics/full.jpeg) |
2003 |
DBLP DOI BibTeX RDF |
|
87 | Qingfeng Chen, Yi-Ping Phoebe Chen |
Discovery of Structural and Functional Features in RNA Pseudoknots. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE Trans. Knowl. Data Eng. ![In: IEEE Trans. Knowl. Data Eng. 21(7), pp. 974-984, 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
87 | Minghui Jiang 0001, Pedro J. Tejada, Ramoni O. Lasisi, Shanhong Cheng, D. Scott Fechser |
K-Partite RNA Secondary Structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: Algorithms in Bioinformatics, 9th International Workshop, WABI 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings, pp. 157-168, 2009, Springer, 978-3-642-04240-9. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
87 | Matthias Höchsmann, Björn Voss, Robert Giegerich |
Pure Multiple RNA Secondary Structure Alignments: A Progressive Profile Approach. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE ACM Trans. Comput. Biol. Bioinform. ![In: IEEE ACM Trans. Comput. Biol. Bioinform. 1(1), pp. 53-62, 2004. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
|
85 | Xiaoyong Fang, Zhigang Luo, Zhenghua Wang |
Predicting RNA Secondary Structure Using Profile Stochastic Context-Free Grammars and Phylogenic Analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Sci. Technol. ![In: J. Comput. Sci. Technol. 23(4), pp. 582-589, 2008. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
phylogenic analysis, RNA secondary structure, stochastic context-free grammar |
83 | Daniel DeBlasio, Jocelyne Bruand, Shaojie Zhang |
PMFastR: A New Approach to Multiple RNA Structure Alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: Algorithms in Bioinformatics, 9th International Workshop, WABI 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings, pp. 49-61, 2009, Springer, 978-3-642-04240-9. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
multiple RNA alignment, RNA sequence-structure alignment, iterative alignment |
78 | Shibin Qiu, Terran Lane |
The RNA String Kernel for siRNA Efficacy Prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBE ![In: Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2007, October 14-17, 2007, Harvard Medical School, Boston, MA, USA, pp. 307-314, 2007, IEEE Computer Society, 978-1-4244-1509-0. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
78 | Michela Taufer, Ming-Ying Leung, Kyle L. Johnson, Abel Licon |
RNAVLab: A unified environment for computational RNA structure analysis based on grid computing technology. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS ![In: 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), Proceedings, 26-30 March 2007, Long Beach, California, USA, pp. 1-8, 2007, IEEE. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
78 | Oyun-Erdene Namsrai, Kwang Su Jung, Sunshin Kim, Keun Ho Ryu |
RNA Secondary Structure Prediction with Simple Pseudoknots Based on Dynamic Programming. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICIC (3) ![In: Computational Intelligence and Bioinformatics, International Conference on Intelligent Computing, ICIC 2006, Kunming, China, August 16-19, 2006. Proceedings, Part III, pp. 303-311, 2006, Springer, 3-540-37277-6. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
78 | Daeho Lim, Kyungsook Han |
PairAnalyzer: Extracting and Visualizing RNA Structure Elements Formed by Base Pairing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
International Conference on Computational Science ![In: Computational Science - ICCS 2004, 4th International Conference, Kraków, Poland, June 6-9, 2004, Proceedings, Part I, pp. 279-286, 2004, Springer, 3-540-22114-X. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
|
78 | Wootaek Kim, Yujin Lee, Kyungsook Han |
Visualization of RNA Pseudoknot Structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
VECPAR ![In: High Performance Computing for Computational Science - VECPAR 2002, 5th International Conference, Porto, Portugal, June 26-28, 2002, Selected Papers and Invited Talks, pp. 181-196, 2002, Springer, 3-540-00852-7. The full citation details ...](Pics/full.jpeg) |
2002 |
DBLP DOI BibTeX RDF |
|
75 | Carsten Maus |
Component-Based Modelling of RNA Structure Folding. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CMSB ![In: Computational Methods in Systems Biology, 6th International Conference, CMSB 2008, Rostock, Germany, October 12-15, 2008. Proceedings, pp. 44-62, 2008, Springer, 978-3-540-88561-0. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
RNA folding, model components, DEVS, secondary structure, multi-level |
75 | Chunmei Liu, Yinglei Song, Louis W. Shapiro |
RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: Algorithms in Bioinformatics, 7th International Workshop, WABI 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings, pp. 310-322, 2007, Springer, 978-3-540-74125-1. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
path decomposition, maximum weighted independent set, free energy, pseudoknot, RNA secondary structure prediction |
75 | Eli Hershkovitz, Guillermo Sapiro, Allen R. Tannenbaum, Loren Dean Williams |
Statistical Analysis of RNA Backbone. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE ACM Trans. Comput. Biol. Bioinform. ![In: IEEE ACM Trans. Comput. Biol. Bioinform. 3(1), pp. 33-46, 2006. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
RNA backbone, local conformations, torsion angles, conformational motifs, statistical analysis, vector quantization |
75 | Gilles Bailly, Laurence Nigay, David Auber |
NAVRNA: visualization - exploration - editing of RNA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
AVI ![In: Proceedings of the working conference on Advanced visual interfaces, AVI 2006, Venezia, Italy, May 23-26, 2006, pp. 504-507, 2006, ACM Press, 1-59593-353-0. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
distributed display environment, visualization, tabletop display, two-handed interaction, RNA structure |
68 | Kejie Li, Reazur Rahman, Aditi Gupta 0001, Prasad Siddavatam, Michael Gribskov |
Pattern Matching in RNA Structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISBRA ![In: Bioinformatics Research and Applications, Fourth International Symposium, ISBRA 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings, pp. 317-330, 2008, Springer, 978-3-540-79449-3. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
68 | Herbert H. Tsang, Kay C. Wiese |
SARNA-Predict-pk: Predicting RNA secondary structures including pseudoknots. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CIBCB ![In: Proceedings of the 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2008, Sun Valley Resort, Sun Valley, Idaho, USA, September 15-17, 2008, pp. 1-8, 2008, IEEE, 978-1-4244-1778-0. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
68 | Xinyu Tang, Shawna L. Thomas, Lydia Tapia, Nancy M. Amato |
Tools for Simulating and Analyzing RNA Folding Kinetics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
RECOMB ![In: Research in Computational Molecular Biology, 11th Annual International Conference, RECOMB 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings, pp. 268-282, 2007, Springer, 3-540-71680-7. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
68 | Hiroshi Sankoh, Koichiro Doi, Akihiro Yamamoto |
An Intentional Kernel Function for RNA Classification. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Discovery Science ![In: Discovery Science, 10th International Conference, DS 2007, Sendai, Japan, October 1-4, 2007, Proceedings, pp. 281-285, 2007, Springer, 978-3-540-75487-9. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
68 | Xiaoyong Fang, Zhigang Luo, Bo Yuan, Zhenghua Wang |
Detecting and Assessing Conserved Stems for Accurate Structural Alignment of RNA Sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBE ![In: Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2007, October 14-17, 2007, Harvard Medical School, Boston, MA, USA, pp. 301-306, 2007, IEEE Computer Society, 978-1-4244-1509-0. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
68 | Mohammad Anwar, Marcel Turcotte |
Evaluation of RNA Secondary Structure Motifs using Regression Analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CCECE ![In: Proceedings of the Canadian Conference on Electrical and Computer Engineering, CCECE 2006, May 7-10, 2006, Ottawa Congress Centre, Ottawa, Canada, pp. 1747-1752, 2006, IEEE, 1-4244-0038-4. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
68 | Oriel Bergig, Danny Barash, Klara Kedem |
RNA Motif Search Using the Structure to String (STR2) Method. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CSB ![In: 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2004, Stanford, CA, USA, August 16-19, 2004, pp. 660-661, 2004, IEEE Computer Society, 0-7695-2194-0. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
|
68 | Christine E. Heitsch, Anne Condon, Holger H. Hoos |
From RNA Secondary Structure to Coding Theory: A Combinatorial Approach. ![Search on Bibsonomy](Pics/bibsonomy.png) |
DNA ![In: DNA Computing, 8th International Workshop on DNA Based Computers, DNA8, Sapporo, Japan, June 10-13, 2002, Revised Papers, pp. 215-228, 2002, Springer, 3-540-00531-5. The full citation details ...](Pics/full.jpeg) |
2002 |
DBLP DOI BibTeX RDF |
|
68 | Guohui Lin, Bin Ma 0002, Kaizhong Zhang |
Edit distance between two RNA structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
RECOMB ![In: Proceedings of the Fifth Annual International Conference on Computational Biology, RECOMB 2001, Montréal, Québec, Canada, April 22-25, 2001, pp. 211-220, 2001, ACM, 1-58113-353-7. The full citation details ...](Pics/full.jpeg) |
2001 |
DBLP DOI BibTeX RDF |
|
66 | Oyun-Erdene Namsrai, Keun Ho Ryu |
Characterizing Pseudobase and Predicting RNA Secondary Structure with Simple H-Type Pseudoknots Based on Dynamic Programming. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ADMA ![In: Advanced Data Mining and Applications, Third International Conference, ADMA 2007, Harbin, China, August 6-8, 2007, Proceedings, pp. 578-585, 2007, Springer, 978-3-540-73870-1. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
Pseudobase, H-type pseudo-knots, dynamic programming, RNA secondary structure prediction |
66 | Yinglei Song, Jizhen Zhao, Chunmei Liu, Kan Liu, Russell L. Malmberg, Liming Cai |
RNA Structural Homology Search with a Succinct Stochastic Grammar Model. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Sci. Technol. ![In: J. Comput. Sci. Technol. 20(4), pp. 454-464, 2005. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
RNA structural homology search, stochastic context-free grammar (SCFG), structure-sequence alignment, pseudoknot |
64 | Vineet Bafna, Shaojie Zhang |
FastR: Fast Database Search Tool for Non-Coding RNA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CSB ![In: 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2004, Stanford, CA, USA, August 16-19, 2004, pp. 52-61, 2004, IEEE Computer Society, 0-7695-2194-0. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
non-coding RNA genes, dynamic programming, sequence alignment, RNA, filtration, database search |
63 | Xiaoyong Fang, Zhenghua Wang, Zhigang Luo, Bo Yuan, Fan Ding |
The detection and assessment of possible RNA secondary structure using multiple sequence alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SAC ![In: Proceedings of the 2007 ACM Symposium on Applied Computing (SAC), Seoul, Korea, March 11-15, 2007, pp. 133-137, 2007, ACM, 1-59593-480-4. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
multiple sequence alignment, RNA secondary structure, non-coding RNA |
59 | Ulrike Mückstein, Hakim Tafer, Stephan H. Bernhart, Maribel Hernandez-Rosales, Jörg Vogel 0002, Peter F. Stadler, Ivo L. Hofacker |
Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIRD ![In: Bioinformatics Research and Development, Second International Conference, BIRD 2008, Vienna, Austria, July 7-9, 2008, Proceedings, pp. 114-127, 2008, Springer, 978-3-540-70598-7. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
58 | Kay C. Wiese, Edward Glen |
jViz.Rna - An Interactive Graphical Tool for Visualizing RNA Secondary Structure Including Pseudoknots. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CBMS ![In: 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 22-23 June 2006, Salt Lake City, Utah, USA, pp. 659-664, 2006, IEEE Computer Society, 978-0-7695-2517-4. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
58 | Kay C. Wiese, Andrew Hendriks |
A hybrid clustering/evolutionary algorithm for RNA folding. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CIBCB ![In: Proceedings of the 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2008, Sun Valley Resort, Sun Valley, Idaho, USA, September 15-17, 2008, pp. 15-21, 2008, IEEE, 978-1-4244-1778-0. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
58 | Herbert H. Tsang, Kay C. Wiese |
The significance of thermodynamic models in the accuracy improvement of RNA secondary structure prediction using permutation-based simulated annealing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE Congress on Evolutionary Computation ![In: Proceedings of the IEEE Congress on Evolutionary Computation, CEC 2007, 25-28 September 2007, Singapore, pp. 3879-3885, 2007, IEEE, 978-1-4244-1339-3. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
58 | Jean-Eudes Duchesne, Mathieu Giraud, Nadia El-Mabrouk |
Seed-Based Exclusion Method for Non-coding RNA Gene Search. ![Search on Bibsonomy](Pics/bibsonomy.png) |
COCOON ![In: Computing and Combinatorics, 13th Annual International Conference, COCOON 2007, Banff, Canada, July 16-19, 2007, Proceedings, pp. 27-39, 2007, Springer, 978-3-540-73544-1. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
58 | Xueyi Wang, Jun Huan, Jack Snoeyink, Wei Wang 0010 |
Mining RNA Tertiary Motifs with Structure Graphs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SSDBM ![In: 19th International Conference on Scientific and Statistical Database Management, SSDBM 2007, 9-11 July 2007, Banff, Canada, Proceedings, pp. 31, 2007, IEEE Computer Society, 0-7695-2868-6. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
58 | Xiaoyong Fang, Zhigang Luo, Bo Yuan, Zhenghua Wang, Fan Ding |
Constructing Structural Alignment of RNA Sequences by Detecting and Assessing Conserved Stems. ![Search on Bibsonomy](Pics/bibsonomy.png) |
LSMS (2) ![In: Life System Modeling and Simulation, International Conference, LSMS 2007, Shanghai, China, September 14-17, 2007, Proceedings, pp. 208-217, 2007, Springer, 978-3-540-74770-3. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
58 | Markus Bauer 0001, Gunnar W. Klau, Knut Reinert |
Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CompLife ![In: Computational Life Sciences, First International Symposium, CompLife 2005, Konstanz, Germany, September 25-27, 2005, Proceedings, pp. 217-228, 2005, Springer, 3-540-29104-0. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
|
58 | Tong Liu, Bertil Schmidt |
Parallel RNA Sequence-Structure Alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS ![In: 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), CD-ROM / Abstracts Proceedings, 26-30 April 2004, Santa Fe, New Mexico, USA, 2004, IEEE Computer Society, 0-7695-2132-0. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
|
58 | Zhuozhi Wang, Kaizhong Zhang |
Multiple RNA Structure Alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CSB ![In: 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2004, Stanford, CA, USA, August 16-19, 2004, pp. 246-254, 2004, IEEE Computer Society, 0-7695-2194-0. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
|
58 | Kay C. Wiese, Edward Glen |
RNA Structure as Permutation: A GA Approach Comparing Different Genetic Sequencing Operators. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISMIS ![In: Foundations of Intelligent Systems, 14th International Symposium, ISMIS 2003, Maebashi City, Japan, October 28-31, 2003, Proceedings, pp. 511-520, 2003, Springer, 3-540-20256-0. The full citation details ...](Pics/full.jpeg) |
2003 |
DBLP DOI BibTeX RDF |
Evolutionary Computation, Bioinformatics, Soft Computing |
58 | Matthias Höchsmann, Thomas Töller, Robert Giegerich, Stefan Kurtz |
Local Similarity in RNA Secondary Structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CSB ![In: 2nd IEEE Computer Society Bioinformatics Conference, CSB 2003, Stanford, CA, USA, August 11-14, 2003, pp. 159-168, 2003, IEEE Computer Society, 0-7695-2000-6. The full citation details ...](Pics/full.jpeg) |
2003 |
DBLP DOI BibTeX RDF |
|
58 | Giulio Pavesi, Giancarlo Mauri, Graziano Pesole |
Predicting Conserved Hairpin Motifs in Unaligned RNA Sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICTAI ![In: 15th IEEE International Conference on Tools with Artificial Intelligence (ICTAI 2003), 3-5 November 2003, Sacramento, California, USA, pp. 10-17, 2003, IEEE Computer Society, 0-7695-2038-3. The full citation details ...](Pics/full.jpeg) |
2003 |
DBLP DOI BibTeX RDF |
|
58 | Barry Cohen, Steven Skiena |
Designing RNA structures: natural and artificial selection. ![Search on Bibsonomy](Pics/bibsonomy.png) |
RECOMB ![In: Proceedings of the Sixth Annual International Conference on Computational Biology, RECOMB 2002, Washington, DC, USA, April 18-21, 2002, pp. 109-116, 2002, ACM, 1-58113-498-3. The full citation details ...](Pics/full.jpeg) |
2002 |
DBLP DOI BibTeX RDF |
|
58 | Rune B. Lyngsø, Christian N. S. Pedersen |
Pseudoknots in RNA secondary structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
RECOMB ![In: Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, RECOMB 2000, Tokyo, Japan, April 8-11, 2000, pp. 201-209, 2000, ACM, 1-58113-186-0. The full citation details ...](Pics/full.jpeg) |
2000 |
DBLP DOI BibTeX RDF |
|
57 | Étienne Ogoubi, David Pouliot, Marcel Turcotte, Abdelhakim Hafid |
Parallel Multiprocessor Approaches to the RNA Folding Problem. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PPAM ![In: Parallel Processing and Applied Mathematics, 7th International Conference, PPAM 2007, Gdansk, Poland, September 9-12, 2007, Revised Selected Papers, pp. 1230-1239, 2007, Springer, 978-3-540-68105-2. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
message passing, folding, parallel computer architecture, secondary structure, RNA |
57 | Xinyu Tang, Bonnie Kirkpatrick, Shawna L. Thomas, Guang Song, Nancy M. Amato |
Using motion planning to study RNA folding kinetics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
RECOMB ![In: Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004, San Diego, California, USA, March 27-31, 2004, pp. 252-261, 2004, ACM, 1-58113-755-9. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
folding kinetics, motion planning, RNA |
56 | Jennifer A. Smith 0001 |
RNA Search with Decision Trees and Partial Covariance Models. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE ACM Trans. Comput. Biol. Bioinform. ![In: IEEE ACM Trans. Comput. Biol. Bioinform. 6(3), pp. 517-527, 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
covariance models, RNA database search, decision trees, Bioinformatics, computational intelligence |
56 | Mario Alberto Garcia Martinez, Rubén Posada-Gómez, Giner Alor-Hernández |
Novel Architecture for RNA Secondary Structure Prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IDEAL ![In: Intelligent Data Engineering and Automated Learning - IDEAL 2009, 10th International Conference, Burgos, Spain, September 23-26, 2009. Proceedings, pp. 416-423, 2009, Springer, 978-3-642-04393-2. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
RNA-problem, FPGA, hardware implementation, secondary structure |
56 | Shu-Yun Le, Jih-Hsiang Chen |
Statistical Inference on Distinct RNA Stem-Loops in Genomic Sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIRD ![In: Bioinformatics Research and Development, First International Conference, BIRD 2007, Berlin, Germany, March 12-14, 2007, Proceedings, pp. 314-327, 2007, Springer, 978-3-540-71232-9. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
well-ordered RNA structure, microRNA stem-loops, dynamic programming, statistical inference |
56 | Guillaume Blin, Guillaume Fertin, Gaël Herry, Stéphane Vialette |
Comparing RNA Structures: Towards an Intermediate Model Between the Editand the LapcsProblems. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BSB ![In: Advances in Bioinformatics and Computational Biology, Second Brazilian Symposium on Bioinformatics, BSB 2007, Angra dos Reis, Brazil, August 29-31, 2007, Proceedings, pp. 101-112, 2007, Springer, 978-3-540-73730-8. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
arc-annotated sequences, motif extraction, RNA structures |
56 | Tetsuo Shibuya |
Generalization of a Suffix Tree for RNA Structural Pattern Matching. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Algorithmica ![In: Algorithmica 39(1), pp. 1-19, 2004. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
Suffix tree generalization, Parameterized suffix tree, RNA structure matching, Pattern matching, Computational biology |
53 | Scott F. Smith 0002 |
A Fast Approximate Covariance-Model-Based Database Search Method for Non-coding RNA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISBRA ![In: Bioinformatics Research and Applications, Third International Symposium, ISBRA 2007, Atlanta, GA, USA, May 7-10, 2007, Proceedings, pp. 270-281, 2007, Springer, 978-3-540-72030-0. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
functional RNA, covariance models, dynamic programming, database search, gene finding, Non-coding RNA |
49 | Sahar Al Seesi, Sanguthevar Rajasekaran, Reda A. Ammar |
RNA Pseudoknot Folding through Inference and Identification Using TAGRNA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BICoB ![In: Bioinformatics and Computational Biology, First International Conference, BICoB 2009, New Orleans, LA, USA, April 8-10, 2009. Proceedings, pp. 90-101, 2009, Springer, 978-3-642-00726-2. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
49 | Mugdha Khaladkar, Vivian Bellofatto, Jason Tsong-Li Wang, Vandanaben Patel, Marvin K. Nakayama |
Constrained RNA Structural Alignment: Algorithms and Application to Motif Detection in the Untranslated Regions of Trypanosoma brucei mRNAs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBE ![In: Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2007, October 14-17, 2007, Harvard Medical School, Boston, MA, USA, pp. 334-341, 2007, IEEE Computer Society, 978-1-4244-1509-0. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
49 | Mugdha Khaladkar, Jason T. L. Wang |
Detecting Conserved RNA Secondary Structures in Viral Genomes: The RADAR Approach. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BioSurveillance ![In: Intelligence and Security Informatics: Biosurveillance, Second NSF Workshop, BioSurveillance 2007, New Brunswick, NJ, USA, May 22, 2007, Proceedings., pp. 222-227, 2007, Springer, 978-3-540-72607-4. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
49 | Rolf Backofen, Danny Hermelin, Gad M. Landau, Oren Weimann |
Local Alignment of RNA Sequences with Arbitrary Scoring Schemes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CPM ![In: Combinatorial Pattern Matching, 17th Annual Symposium, CPM 2006, Barcelona, Spain, July 5-7, 2006, Proceedings, pp. 246-257, 2006, Springer, 3-540-35455-7. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
49 | Patricia A. Evans |
Finding Common RNA Pseudoknot Structures in Polynomial Time. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CPM ![In: Combinatorial Pattern Matching, 17th Annual Symposium, CPM 2006, Barcelona, Spain, July 5-7, 2006, Proceedings, pp. 223-232, 2006, Springer, 3-540-35455-7. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
49 | Gilles Bailly, David Auber, Laurence Nigay |
From Visualization to Manipulation of RNA Secondary and Tertiary Structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IV ![In: 10th International Conference on Information Visualisation, IV 2006, 5-7 July 2006, London, UK, pp. 107-116, 2006, IEEE Computer Society, 0-7695-2602-0. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
bioinformtics, multi-surface interaction, graph drawing, two-handed interaction, multiple cursors |
49 | Zhuozhi Wang, Elisabeth R. M. Tillier |
A Bayesian approach to pairwise RNA Secondary Structure Alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CIBCB ![In: Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2006, Renaissance Hotel Downtown, Toronto, Ontario, Canada, September 28-29, 2006, pp. 1-8, 2006, IEEE, 1-4244-0623-4. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
49 | Carlos A. M. Del Carpio, Mohamed Ismael, Eiichiro Ichiishi, Michihisa Koyama, Momoji Kubo, Akira Miyamoto |
An Evolving Automaton for RNA Secondary Structure Prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IJCNN ![In: Proceedings of the International Joint Conference on Neural Networks, IJCNN 2006, part of the IEEE World Congress on Computational Intelligence, WCCI 2006, Vancouver, BC, Canada, 16-21 July 2006, pp. 2226-2233, 2006, IEEE, 0-7803-9490-9. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
49 | Qi Liu, Xiuzi Ye, Yin Zhang 0006 |
A Hopfield Neural Network Based Algorithm for RNA Secondary Structure Prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IMSCCS (1) ![In: Interdisciplinary and Multidisciplinary Research in Computer Science, IEEE CS Proceeding of the First International Multi-Symposium of Computer and Computational Sciences (IMSCCS|06), June 20-24, 2006, Zhejiang University, Hangzhou, China, Vol. 1, pp. 10-16, 2006, IEEE Computer Society, 0-7695-2581-4. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
49 | Wenduo Zhou, David K. Lowenthal |
A Parallel, Out-of-Core Algorithm for RNA Secondary Structure Prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICPP ![In: 2006 International Conference on Parallel Processing (ICPP 2006), 14-18 August 2006, Columbus, Ohio, USA, pp. 74-81, 2006, IEEE Computer Society, 0-7695-2636-5. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
49 | Jizhen Zhao, Russell L. Malmberg, Liming Cai |
Rapid ab initio RNA Folding Including Pseudoknots Via Graph Tree Decomposition. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: Algorithms in Bioinformatics, 6th International Workshop, WABI 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings, pp. 262-273, 2006, Springer, 3-540-39583-0. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
49 | Markus Bauer 0001, Gunnar W. Klau |
Structural Alignment of Two RNA Sequences with Lagrangian Relaxation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISAAC ![In: Algorithms and Computation, 15th International Symposium, ISAAC 2004, Hong Kong, China, December 20-22, 2004, Proceedings, pp. 113-123, 2004, Springer, 3-540-24131-0. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
|
49 | Richard F. Meraz, Xiaofeng He, Chris H. Q. Ding, Stephen R. Holbrook |
Positive Sample Only Learning (PSOL) for Predicting RNA Genes in E. coli. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CSB ![In: 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2004, Stanford, CA, USA, August 16-19, 2004, pp. 535-538, 2004, IEEE Computer Society, 0-7695-2194-0. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
|
49 | Dongkyu Lee, Kyungsook Han |
A Genetic Algorithm for Inferring Pseudoknotted RNA Structures from Sequence Data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Discovery Science ![In: Discovery Science, 6th International Conference, DS 2003, Sapporo, Japan, October 17-19,2003, Proceedings, pp. 336-343, 2003, Springer, 3-540-20293-5. The full citation details ...](Pics/full.jpeg) |
2003 |
DBLP DOI BibTeX RDF |
|
49 | Phillip A. Sharp |
RNA biology and the genome (abstract only). ![Search on Bibsonomy](Pics/bibsonomy.png) |
RECOMB ![In: Proceedings of the Fifth Annual International Conference on Computational Biology, RECOMB 2001, Montréal, Québec, Canada, April 22-25, 2001, pp. 278, 2001, ACM, 1-58113-353-7. The full citation details ...](Pics/full.jpeg) |
2001 |
DBLP DOI BibTeX RDF |
|
49 | Zhuozhi Wang, Kaizhong Zhang |
Alignment between Two RNA Structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
MFCS ![In: Mathematical Foundations of Computer Science 2001, 26th International Symposium, MFCS 2001 Marianske Lazne, Czech Republic, August 27-31, 2001, Proceedings, pp. 690-702, 2001, Springer, 3-540-42496-2. The full citation details ...](Pics/full.jpeg) |
2001 |
DBLP DOI BibTeX RDF |
|
49 | Kaizhong Zhang, Lusheng Wang 0001, Bin Ma 0002 |
Computing Similarity between RNA Structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CPM ![In: Combinatorial Pattern Matching, 10th Annual Symposium, CPM 99, Warwick University, UK, July 22-24, 1999, Proceedings, pp. 281-293, 1999, Springer, 3-540-66278-2. The full citation details ...](Pics/full.jpeg) |
1999 |
DBLP DOI BibTeX RDF |
|
48 | Sahar Al Seesi, Sanguthevar Rajasekaran, Reda A. Ammar |
Pseudoknot Identification through Learning TAGRNA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PRIB ![In: Pattern Recognition in Bioinformatics, Third IAPR International Conference, PRIB 2008, Melbourne, Australia, October 15-17, 2008. Proceedings, pp. 132-143, 2008, Springer, 978-3-540-88434-7. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
48 | Rna Ghallab, Mona Shokair, Atef E. Abou-El-azm, Ali A. Sakr, Waleed Saad, Ahmed Naguib |
Performance enhancement using multiple-input multiple-output (MIMO) electronic relay in massive MIMO cellular networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IET Networks ![In: IET Networks 8(5), pp. 299-306, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
|
48 | Rna Ghallab, Ali A. Sakr, Mona Shokair, Atef E. Abou-El-azm |
Electronic relay performance in the inband device-to-device (D2D) communication system. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Telecommun. Syst. ![In: Telecommun. Syst. 72(1), pp. 29-39, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
|
47 | Yong Dou, Fei Xia, Jingfei Jiang |
Fine-grained parallel application specific computing for RNA secondary structure prediction using SCFGS on FPGA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CASES ![In: Proceedings of the 2009 International Conference on Compilers, Architecture, and Synthesis for Embedded Systems, CASES 2009, Grenoble, France, October 11-16, 2009, pp. 107-116, 2009, ACM. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
SCFGS, reconfigurable algorithm accelerator, secondary structure prediction, FPGA, RNA |
47 | Guillaume Rizk, Dominique Lavenier |
GPU Accelerated RNA Folding Algorithm. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICCS (1) ![In: Computational Science - ICCS 2009, 9th International Conference, Baton Rouge, LA, USA, May 25-27, 2009, Proceedings, Part I, pp. 1004-1013, 2009, Springer, 978-3-642-01969-2. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
minimum free energy, GPGPU, secondary structure, RNA |
47 | Weijia Xu, Stuart Ozer, Robin Ray Gutell |
Covariant Evolutionary Event Analysis for Base Interaction Prediction Using a Relational Database Management System for RNA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SSDBM ![In: Scientific and Statistical Database Management, 21st International Conference, SSDBM 2009, New Orleans, LA, USA, June 2-4, 2009, Proceedings, pp. 200-216, 2009, Springer, 978-3-642-02278-4. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
Bioinformatics, Sequence Analysis, RNA, Biological database |
47 | Hosna Jabbari, Anne Condon, Ana Pop, Cristina Pop 0004, Yinglei Zhao |
HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: Algorithms in Bioinformatics, 7th International Workshop, WABI 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings, pp. 323-334, 2007, Springer, 978-3-540-74125-1. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
Secondary Structure Prediction, Folding Pathways, Hierarchical Folding, RNA, Pseudoknot |
47 | Julien Allali, Marie-France Sagot |
A Multiple Graph Layers Model with Application to RNA Secondary Structures Comparison. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SPIRE ![In: String Processing and Information Retrieval, 12th International Conference, SPIRE 2005, Buenos Aires, Argentina, November 2-4, 2005, Proceedings, pp. 348-359, 2005, Springer, 3-540-29740-5. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
Graph layers, graph comparison, edit distance, secondary structure, RNA |
47 | Gerald Gainant, David Auber |
ARNA: Interactive Comparison and Alignment of RNA Secondary Structure. ![Search on Bibsonomy](Pics/bibsonomy.png) |
INFOVIS ![In: 10th IEEE Symposium on Information Visualization (InfoVis 2004), 10-12 October 2004, Austin, TX, USA, 2004, IEEE Computer Society, 0-7803-8779-1. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
visualization, bioinformatics, graph drawing, sequence alignment, combinatorics, RNA |
47 | Julien Allali, Marie-France Sagot |
Novel Tree Edit Operations for RNA Secondary Structure Comparison. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: Algorithms in Bioinformatics, 4th International Workshop, WABI 2004, Bergen, Norway, September 17-21, 2004, Proceedings, pp. 412-425, 2004, Springer, 3-540-23018-1. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
edit operation, distance, secondary structure, RNA, tree comparison |
46 | Hengwu Li |
Approximation algorithm and scheme for RNA structure prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICIS ![In: Proceedings of the 2nd International Conference on Interaction Sciences: Information Technology, Culture and Human (ICIS 2009), Seoul, Korea, 24-26 November 2009, pp. 1364-1367, 2009, ACM, 978-1-60558-710-3. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
approximation algorithm, approximation scheme, RNA structure, pseudoknot |
46 | Kay C. Wiese, Alain Deschênes, Andrew Hendriks |
RnaPredict-An Evolutionary Algorithm for RNA Secondary Structure Prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE ACM Trans. Comput. Biol. Bioinform. ![In: IEEE ACM Trans. Comput. Biol. Bioinform. 5(1), pp. 25-41, 2008. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
RnaPredict, Evolutionary Computation, RNA Secondary Structure Prediction |
46 | Matthias Zytnicki, Christine Gaspin, Thomas Schiex |
DARN! A Weighted Constraint Solver for RNA Motif Localization. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Constraints An Int. J. ![In: Constraints An Int. J. 13(1-2), pp. 91-109, 2008. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
DARN, RNA motif localization, ncRNA |
46 | Mathias Möhl, Sebastian Will, Rolf Backofen |
Fixed Parameter Tractable Alignment of RNA Structures Including Arbitrary Pseudoknots. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CPM ![In: Combinatorial Pattern Matching, 19th Annual Symposium, CPM 2008, Pisa, Italy, June 18-20, 2008, Proceedings, pp. 69-81, 2008, Springer, 978-3-540-69066-5. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
RNA alignment, fixed parameter tractability, pseudoknots |
46 | Dandan Song, Zhidong Deng |
A fuzzy model of predicting RNA secondary structure. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Sci. China Ser. F Inf. Sci. ![In: Sci. China Ser. F Inf. Sci. 50(6), pp. 846-866, 2007. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
fuzzy dynamic programming, fuzzy model, RNA secondary structure |
46 | Sergey Bereg, Marcin Kubica, Tomasz Walen, Binhai Zhu |
RNA multiple structural alignment with longest common subsequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comb. Optim. ![In: J. Comb. Optim. 13(2), pp. 179-188, 2007. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
RNA multiple structure alignment, Dynamic programming, Longest common subsequence |
46 | Guillaume Blin, Guillaume Fertin, Irena Rusu, Christine Sinoquet |
Extending the Hardness of RNA Secondary Structure Comparison. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ESCAPE ![In: Combinatorics, Algorithms, Probabilistic and Experimental Methodologies, First International Symposium, ESCAPE 2007, Hangzhou, China, April 7-9, 2007, Revised Selected Papers, pp. 140-151, 2007, Springer, 978-3-540-74449-8. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
arc-annotated sequences, NP-hardness, computational biology, edit distance, RNA structures |
46 | Shaojie Zhang, Brian Haas, Eleazar Eskin, Vineet Bafna |
Searching Genomes for Noncoding RNA Using FastR. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE ACM Trans. Comput. Biol. Bioinform. ![In: IEEE ACM Trans. Comput. Biol. Bioinform. 2(4), pp. 366-379, 2005. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
Noncoding RNA, riboswitch, bacterial genome, filtration, database search |
46 | Christina Witwer, Ivo L. Hofacker, Peter F. Stadler |
Prediction of Consensus RNA Secondary Structures Including Pseudoknots. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE ACM Trans. Comput. Biol. Bioinform. ![In: IEEE ACM Trans. Comput. Biol. Bioinform. 1(2), pp. 66-77, 2004. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
covariance, RNA secondary structure, pseudoknots |
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