Search results for "Regulatory"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
107	Markus Müller	Regulatory competition and E-Commerce.	ICEC	2003	DBLP DOI BibTeX RDF	conflict of laws, internet regulation, regulatory competition, electronic commerce
94	Weihui Wu, Yongling Song, Shouguang Jin, Su-Shing Chen	An Interactive Map of Regulatory Networks of Pseudomonas aeruginosa Genome.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
87	Elissa J. Chesler, Michael A. Langston	Combinatorial Genetic Regulatory Network Analysis Tools for High Throughput Transcriptomic Data.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF	Putative Co-Regulation, Quantitative Trait Loci, Regulatory Models, Microarray Analysis
82	Edward R. Dougherty, Marcel Brun, Jeffrey M. Trent, Michael L. Bittner	Conditioning-Based Modeling of Contextual Genomic Regulation.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	Microarray, regulatory networks
77	Manuel Middendorf, Anshul Kundaje, Chris Wiggins 0001, Yoav Freund, Christina S. Leslie	Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response.	Regulatory Genomics	2004	DBLP DOI BibTeX RDF
72	Michal Lapidot, Yitzhak Pilpel	Characterization of the Effects of TF Binding Site Variations on Gene Expression Towards Predicting the Functional Outcomes of Regulatory SNPs.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
72	Guandong Wang, Weixiong Zhang	Build a Dictionary, Learn a Grammar, Decipher Stegoscripts, and Discover Genomic Regulatory Elements.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
70	David Kulp, Manjunatha Jagalur	Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
70	Michiel J. L. de Hoon, Dennis Vitkup	Comparative Systems Biology of the Sporulation Initiation Network in Prokaryotes.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
69	Khwunta Kirimasthong, Aompilai Manorat, Jeerayut Chaijaruwanich, Sukon Prasitwattanaseree, Chinae Thammarongtham	Inference of Gene Regulatory Network by Bayesian Network Using Metropolis-Hastings Algorithm.	ADMA	2007	DBLP DOI BibTeX RDF	Transcriptional expression analysis, Bayesian network, Gene regulatory network, Metropolis-Hastings algorithm
62	Haseong Kim, Jae K. Lee, Taesung Park	Improvement of Computing Times in Boolean Networks Using Chi-square Tests.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
62	Sergiy A. Vilkomir, Jonathan P. Bowen, Aditya K. Ghose	Formalization and assessment of regulatory requirements for safety-critical software.	Innov. Syst. Softw. Eng.	2006	DBLP DOI BibTeX RDF	Regulatory requirements, Formal methods, Certification, Z notation
62	O. V. Kel, A. G. Romachenko, Alexander E. Kel, Andrey N. Naumochkin, Nikolay A. Kolchanov	Data representation in the TRRD-a database of transcription regulatory regions of the eukaryotic genomes.	HICSS (5)	1995	DBLP DOI BibTeX RDF	TRRD, transcription regulatory regions, eukaryotic genomes, TRRD database, structural functional organization, protein factors, transcription signals, eukaryotic genome, EMBL, EPD, TFD, TRANSFAC, human glycoprotein hormone gene, database, data structures, database management systems, medical information systems, genetics, biology computing, data representation, transcription regulation
60	Claudine Chaouiya, Elisabeth Remy, Denis Thieffry	Qualitative Petri Net Modelling of Genetic Networks.	Trans. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
55	Keith Noto, Mark Craven	Learning Regulatory Network Models that Represent Regulator States and Roles.	Regulatory Genomics	2004	DBLP DOI BibTeX RDF
54	Huiru Zheng, Haiying Wang 0001, Jinglu Hu	Cluster Analysis of Regulatory Sequences with a Log Likelihood Ratio Statistics-based Similarity Measure.	BIBE	2007	DBLP DOI BibTeX RDF
54	Jane Cleland-Huang, Adam Czauderna, Marek Gibiec, John Emenecker	A machine learning approach for tracing regulatory codes to product specific requirements.	ICSE (1)	2010	DBLP DOI BibTeX RDF	requirements classification, traceability, regulatory compliance
54	Francisco-Javier Lopez, Carlos Cano, Fernando García-Alcalde, Armando Blanco	A Fuzzy Approach for Studying Combinatorial Regulatory Actions of Transcription Factors in Yeast.	IDEAL	2009	DBLP DOI BibTeX RDF	Fuzzy itemsets, regulatory modules, transcription factors, yeast
54	Jinlian Wang, Jian Zhang, Lin Li 0010	A Method for Modeling Gene Regulatory Network with Personal Computer Cluster.	ICIC (1)	2009	DBLP DOI BibTeX RDF	colon cancer, graph coloring, gene regulatory network, computer cluster, gene expression profile
54	Xiuwei Zhang, Maryam Zaheri, Bernard M. E. Moret	Using Phylogenetic Relationships to Improve the Inference of Transcriptional Regulatory Networks.	BMEI (1)	2008	DBLP DOI BibTeX RDF	phylogenetic relationships, maximum likelihood, dynamic Bayesian networks, regulatory networks
54	Alexandros Kanterakis, Dimitris Kafetzopoulos, Vassilis Moustakis, George Potamias	Mining Gene Expression Profiles and Gene Regulatory Networks: Identification of Phenotype-Specific Molecular Mechanisms.	SETN	2008	DBLP DOI BibTeX RDF	Bresat cancer, Data mining, Bioinformatics, Microarrays, Gene regulatory networks, gene expression profiling, Biomedical informatics
54	Nicole Radde, Lars Kaderali	Bayesian Inference of Gene Regulatory Networks Using Gene Expression Time Series Data.	BIRD	2007	DBLP DOI BibTeX RDF	Bayesian regularization, Saccharomyces cerevisiae, gene regulatory network, ordinary differential equations, network inference, cell cycle
54	Yong Wang 0001, Trupti Joshi, Dong Xu 0002, Xiang-Sun Zhang, Luonan Chen	Supervised Inference of Gene Regulatory Networks by Linear Programming.	ICIC (3)	2006	DBLP DOI BibTeX RDF	linear programming, Systems biology, gene regulatory network
54	Yu Zhang, Zhidong Deng, Hongshan Jiang, Peifa Jia	Gene Regulatory Network Construction Using Dynamic Bayesian Network (DBN) with Structure Expectation Maximization (SEM).	RSKT	2006	DBLP DOI BibTeX RDF	structural expectation maximization, microarray, dynamic Bayesian network, gene regulatory network
54	Aurélien Naldi, Elisabeth Remy, Denis Thieffry, Claudine Chaouiya	A Reduction of Logical Regulatory Graphs Preserving Essential Dynamical Properties.	CMSB	2009	DBLP DOI BibTeX RDF	regulatory circuits, stable states, complex attractors, Drosophila development, segmentation, decision diagrams, model reduction, logical modelling, Regulatory networks
53	William Krivan	Fishing for Proteins in the Pacific Northwest.	Regulatory Genomics	2004	DBLP DOI BibTeX RDF
52	Aurélien Naldi, Denis Thieffry, Claudine Chaouiya	Decision Diagrams for the Representation and Analysis of Logical Models of Genetic Networks.	CMSB	2007	DBLP DOI BibTeX RDF	regulatory circuits, stable states, decision diagrams, logical modelling, Regulatory networks
47	Eleazar Eskin, Trey Ideker, Benjamin J. Raphael, Christopher T. Workman (eds.)	Systems Biology and Regulatory Genomics, Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers	Systems Biology and Regulatory Genomics	2006	DBLP DOI BibTeX RDF
47	Chien-Hung Huang, Jywe-Fei Fang, Jeffrey J. P. Tsai, Ka-Lok Ng	Topological Robustness of the Protein-Protein Interaction Networks.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
47	Aviv A. Mezer, Eran Bosis, Uri Ashery, Esther Nachliel, Menachem Gutman	A Comprehensive Kinetic Model of the Exocytotic Process: Evaluation of the Reaction Mechanism.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
47	Huiquan Wang, Craig J. Benham	Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
47	Sing-Hoi Sze, Xiaoyan Zhao	Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
47	Sudhakar Jonnalagadda, Rajagopalan Srinivasan	A Bayesian Approach for Integrating Transcription Regulation and Gene Expression: Application to Saccharomyces Cerevisiae Cell Cycle Data.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
47	Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli	An Interaction-Dependent Model for Transcription Factor Binding.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
47	Chih-Yu Chen, Von-Wun Soo, Chi-Li Kuo	Application of Expectation Maximization Clustering to Transcription Factor Binding Positions for cDNA Microarray Analysis.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
47	Wolfgang P. Lehrach, Dirk Husmeier, Christopher K. I. Williams	Probabilistic in Silico Prediction of Protein-Peptide Interactions.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
47	Elena Zotenko, Katia S. Guimarães, Raja Jothi, Teresa M. Przytycka	Decomposition of Overlapping Protein Complexes: A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
47	Orna Man, Joel L. Sussman, Yitzhak Pilpel	Examination of the tRNA Adaptation Index as a Predictor of Protein Expression Levels.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
47	David L. Dill, Merrill Knapp, Pamela Gage, Carolyn L. Talcott, Keith Laderoute, Patrick Lincoln	The Pathalyzer: A Tool for Analysis of Signal Transduction Pathways.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
47	Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang	Computational Characterization and Identification of Core Promoters of MicroRNA Genes in C. elegans , H. sapiens and A. thaliana.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
47	Gürkan Bebek, Petra Berenbrink, Colin Cooper, Tom Friedetzky, Joseph H. Nadeau, Süleyman Cenk Sahinalp	Improved Duplication Models for Proteome Network Evolution.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
47	Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker	Comparison of Protein-Protein Interaction Confidence Assignment Schemes.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
47	Chaya Ben-Zaken Zilberstein, Eleazar Eskin, Zohar Yakhini	Using Expression Data to Discover RNA and DNA Regulatory Sequence Motifs.	Regulatory Genomics	2004	DBLP DOI BibTeX RDF
47	Uday Kamath, Kenneth A. De Jong, Amarda Shehu	Selecting predictive features for recognition of hypersensitive sites of regulatory genomic sequences with an evolutionary algorithm.	GECCO	2010	DBLP DOI BibTeX RDF	dnase i hypersensitive sites, support vector machines, evolutionary algorithms
47	Xiuwei Zhang, Bernard M. E. Moret	Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models.	WABI	2009	DBLP DOI BibTeX RDF
47	Matthew Hansen, Logan Everett, Larry N. Singh, Sridhar Hannenhalli	Mimosa: Mixture Model of Co-expression to Detect Modulators of Regulatory Interaction.	WABI	2009	DBLP DOI BibTeX RDF
47	Tien-ho Lin, Pradipta Ray, Geir Kjetil Sandve, Selen Uguroglu, Eric P. Xing	BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes.	RECOMB	2008	DBLP DOI BibTeX RDF
47	Daniel Quest, Kathryn Dempsey, Mohammad Shafiullah, Dhundy Bastola, Hesham H. Ali	A parallel architecture for regulatory motif algorithm assessment.	IPDPS	2008	DBLP DOI BibTeX RDF
47	Jonas Gamalielsson, Patric Nilsson, Björn Olsson	A GO-Based Method for Assessing the Biological Plausibility of Regulatory Hypotheses.	International Conference on Computational Science (2)	2006	DBLP DOI BibTeX RDF
47	Azhar Salim, Faramarz Valafar	Reconstruction of Gene Regulatory Networks from Temporal Microarray Data Using Pattern Recognition Techniques.	IJCNN	2006	DBLP DOI BibTeX RDF
47	Eric H. Davidson, Sorin Istrail	Logic Functions of the Genomic Cis-regulatory Code.	UC	2005	DBLP DOI BibTeX RDF
47	Xianhua Dai	Genetic Regulatory Systems Modeled by Recurrent Neural Network.	ISNN (2)	2004	DBLP DOI BibTeX RDF
47	Zhaohui Sun, Jingyi Yang, Jitender S. Deogun	MISAE: A New Approach for Regulatory Motif Extraction.	CSB	2004	DBLP DOI BibTeX RDF
47	Fang-Xiang Wu, Anthony J. Kusalik, Wen-Jun Zhang 0001	A. Genetic Algorithm for Inferring Time Delays in Gene Regulatory Networks.	CSB	2004	DBLP DOI BibTeX RDF
47	Hsien-Da Huang, Jorng-Tzong Horng, Yi-Ming Sun, Ann-Ping Tsou, Shir-Ly Huang	Identifying Transcriptional Regulatory Sites in the Human Genome Using an Integrated Computation.	ISPAN	2004	DBLP DOI BibTeX RDF
47	Tu Minh Phuong, Doheon Lee, Kwang Hyung Lee	Regulatory Element Discovery Using Tree-structured Models.	ICDM	2003	DBLP DOI BibTeX RDF
47	Peter E. Larsen, Yang Dai	Using Gene Expression Modeling to Determine Biological Relevance of Putative Regulatory Networks.	ISBRA	2009	DBLP DOI BibTeX RDF	expression modeling network, Gene expression, least-squares, linear model, regulatory network
47	Hidde de Jong, Michel Page	Search for Steady States of Piecewise-Linear Differential Equation Models of Genetic Regulatory Networks.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	piecewise-linear differential equations, large-scale systems, steady states, Genetic regulatory networks, SAT problem
47	Rui Xu 0001, Donald C. Wunsch II, Ronald Frank	Inference of Genetic Regulatory Networks with Recurrent Neural Network Models Using Particle Swarm Optimization.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF	Time series gene expression data, Particle swarm optimization, Recurrent neural networks, Genetic regulatory networks
47	Jihye Kim, Sihui Zhao, Steffen Heber	Finding association rules of cis-regulatory elements involved in alternative splicing.	ACM Southeast Regional Conference	2007	DBLP DOI BibTeX RDF	sequence motif, splicing regulatory elements, association rule mining, alternative splicing
47	Elisabeth Remy, Paul Ruet, Luis Eduardo Mendoza, Denis Thieffry, Claudine Chaouiya	From Logical Regulatory Graphs to Standard Petri Nets: Dynamical Roles and Functionality of Feedback Circuits.	Trans. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF	genetic regulatory graphs, feedback circuit, discrete dynamics, Petri nets, qualitative analysis
47	Peter M. Haverty, Zhiping Weng, Ulla Hansen	Transcriptional Regulatory Networks Activated by PI3K and ERK Transduced Growth Signals in Human Glioblastoma Cells.	J. Comput. Sci. Technol.	2005	DBLP DOI BibTeX RDF	PI3K, ERK, PDGF, cis-element, transcriptional, regulatory network
47	Tie Wang, Jeffrey W. Touchman, Weiyi Zhang 0001, Edward B. Suh, Guoliang Xue	A Parallel Algorithm for Extracting Transcription Regulatory Network Motifs.	BIBE	2005	DBLP DOI BibTeX RDF	transcriptional regulatory network, systems biology, Network motifs
47	Eran Segal, Roded Sharan	A discriminative model for identifying spatial cis-regulatory modules.	RECOMB	2004	DBLP DOI BibTeX RDF	cis-regulatory module, probabilistic model, transcriptional regulation
47	Aniruddha Datta, Ashish Choudhary, Michael L. Bittner, Edward R. Dougherty	External Control in Markovian Genetic Regulatory Networks.	Mach. Learn.	2003	DBLP DOI BibTeX RDF	dynamic programming, Markov chain, optimal control, gene regulatory network
47	Manolis Kamvysselis, Nick Patterson, Bruce Birren, Bonnie Berger, Eric S. Lander	Whole-genome comparative annotation and regulatory motif discovery in multiple yeast species.	RECOMB	2003	DBLP DOI BibTeX RDF	genome annotation, regulatory motif discovery, computational biology, comparative genomics
47	Hsien-Da Huang, Huei-Lin Chang, Tsung-Shan Tsou, Baw-Jhiune Liu, Cheng-Yan Kao, Jorng-Tzong Horng	A Data Mining Method to Predict Transcriptional Regulatory Sites Based on Differentially Expressed Genes in Human Genome.	BIBE	2003	DBLP DOI BibTeX RDF	regulatory site, data mining gene expression, transcription factor
47	Alexander J. Hartemink, David K. Gifford, Tommi S. Jaakkola, Richard A. Young	Bayesian Methods for Elucidating Genetic Regulatory Networks.	IEEE Intell. Syst.	2002	DBLP DOI BibTeX RDF	Affymetrix GeneChip, annotated Bayesian network, annotated graphical model, computational functional genomics, gene expression array, genomic binding location data, genomic expression data, annotation, model validation, genetic regulatory network
45	Thomas Manke, Christoph Dieterich, Martin Vingron	Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome.	Regulatory Genomics	2004	DBLP DOI BibTeX RDF
45	Irit Gat-Viks, Amos Tanay, Ron Shamir	Modeling and Analysis of Heterogeneous Regulation in Biological Networks.	Regulatory Genomics	2004	DBLP DOI BibTeX RDF
45	Vladimir Filkov, Nameeta Y. Shah	Inferring Cis-region Hierarchies from Patterns in Time-Course Gene Expression Data	Regulatory Genomics	2004	DBLP DOI BibTeX RDF
45	Natalia Polouliakh, Michiko Konno, Paul Horton, Kenta Nakai	Parameter Landscape Analysis for Common Motif Discovery Programs.	Regulatory Genomics	2004	DBLP DOI BibTeX RDF
40	Yaochu Jin, Bernhard Sendhoff	Fuzzy Logic in Evolving in silicoOscillatory Dynamics for Gene Regulatory Networks.	Fuzzy Systems in Bioinformatics and Computational Biology	2009	DBLP DOI BibTeX RDF
40	Igli Tashi	Regulatory Compliance and Information Security Assurance.	ARES	2009	DBLP DOI BibTeX RDF
40	Fang-Xiang Wu	Stability and oscillation of genetic regulatory networks with time delays.	BIBE	2008	DBLP DOI BibTeX RDF
40	Xiuwei Zhang, Bernard M. E. Moret	Boosting the Performance of Inference Algorithms for Transcriptional Regulatory Networks Using a Phylogenetic Approach.	WABI	2008	DBLP DOI BibTeX RDF
40	Samuel Drulhe, Giancarlo Ferrari-Trecate, Hidde de Jong, Alain Viari	Reconstruction of Switching Thresholds in Piecewise-Affine Models of Genetic Regulatory Networks.	HSCC	2006	DBLP DOI BibTeX RDF
40	Guido Sanguinetti, Magnus Rattray, Neil D. Lawrence	Identifying Submodules of Cellular Regulatory Networks.	CMSB	2006	DBLP DOI BibTeX RDF
40	Guojun Li, Jizhu Lu, Victor Olman, Ying Xu 0001	PROMOCO: a New Program for Prediction of cis Regulatory Elements: From High-Information Content Analysis to Clique Identification.	CSB Workshops	2005	DBLP DOI BibTeX RDF
40	Asim S. Siddiqui, Gordon Robertson, Misha Bilenky, Tamara Astakhova, Obi L. Griffith, Maik Hassel, Keven Lin, Stephen B. Montgomery, Mehrdad Oveisi, Erin Pleasance, Neil Robertson 0004, Monica C. Sleumer, Kevin Teague, Richard Varhol, Maggie Zhang, Steven J. M. Jones	cis-Regulatory Element Prediction in Mammalian Genomes.	CSB Workshops	2005	DBLP DOI BibTeX RDF
40	Yi-Ming Sun, Hsien-Da Huang, Jorng-Tzong Horng, Shir-Ly Huang, Ann-Ping Tsou	RgS-Miner: A Biological Data Warehousing, Analyzing and Mining System for Identifying Transcriptional Regulatory Sites in Human Genome.	DEXA	2004	DBLP DOI BibTeX RDF
40	Mustafa Jarrar, Aldo Gangemi	Workshop on Regulatory Ontologies (WORM) PC Co-chairs' Message.	OTM Workshops	2004	DBLP DOI BibTeX RDF
40	Hongqiang Li, Mi Zhou, Yan Cui 0001	Ranking Gene Regulatory Network Models with Microarray Data and Bayesian Network.	CASDMKM	2004	DBLP DOI BibTeX RDF
40	Sergiy A. Vilkomir, Aditya K. Ghose	Development of a Normative Package for Safety-Critical Software Using Formal Regulatory Requirements.	PROFES	2004	DBLP DOI BibTeX RDF
40	Mihaela Zavolan, Nicholas D. Socci, Nikolaus Rajewsky, Terry Gaasterland	SMASHing regulatory sites in DNA by human.	CSB	2003	DBLP DOI BibTeX RDF
40	Kevin Kontos, Gianluca Bontempi	An improved shrinkage estimator to infer regulatory networks with Gaussian graphical models.	SAC	2009	DBLP DOI BibTeX RDF	Gaussian graphical model, genetic regulatory network, shrinkage
40	Wentao Zhao, Erchin Serpedin, Edward R. Dougherty	Inferring Connectivity of Genetic Regulatory Networks Using Information-Theoretic Criteria.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	information theory, Biology and genetics, DNA microarray, genetic regulatory network
40	Guido Governatori, Jörg Hoffmann 0001, Shazia Wasim Sadiq, Ingo Weber	Detecting Regulatory Compliance for Business Process Models through Semantic Annotations.	Business Process Management Workshops	2008	DBLP DOI BibTeX RDF	Business Process Models, Semantic Annotations, Regulatory Compliance
40	Afshin Esmaeili, Christian Jacob 0001	Evolution of discrete gene regulatory models.	GECCO	2008	DBLP DOI BibTeX RDF	random boolean model, systems biology, gene regulatory network, evolutionary design
40	Cédric Auliac, Florence d'Alché-Buc, Vincent Frouin	Learning Transcriptional Regulatory Networks with Evolutionary Algorithms Enhanced with Niching.	WILF	2007	DBLP DOI BibTeX RDF	evolutionary algorithms, gene regulatory network, niching
40	Erol Gelenbe	Modelling Gene Regulatory Networks.	BIOWIRE	2007	DBLP DOI BibTeX RDF	G-networks, Equilibrium solutions, Stochastic models, Gene regulatory networks
40	Patrick C. H. Ma, Keith C. C. Chan	A novel data mining algorithm for reconstructing gene regulatory networks from microarray data.	SAC	2006	DBLP DOI BibTeX RDF	gene regulatory networks (GRNs), data mining, bioinformatics
40	Harri Lähdesmäki, Ilya Shmulevich, Olli Yli-Harja	On Learning Gene Regulatory Networks Under the Boolean Network Model.	Mach. Learn.	2003	DBLP DOI BibTeX RDF	Consistency Problem, Best-Fit Extension paradigm, gene regulatory networks, network inference
40	Harmen J. Bussemaker, Hao Li, Eric D. Siggia	Regulatory element detection using correlation with expression (abstract only).	RECOMB	2001	DBLP DOI BibTeX RDF	cis-acting regulatory elements, linear least squares fit, microarrys, yeast
38	Eleazar Eskin, Christopher T. Workman (eds.)	Regulatory Genomics, RECOMB 2004 International Workshop, RRG 2004, San Diego, CA, USA, March 26-27, 2004, Revised Selected Papers	Regulatory Genomics	2005	DBLP DOI BibTeX RDF
38	Alexander E. Kel, Yuri Tikunov, Nico Voss, Jürgen Borlak, Edgar Wingender	Application of Kernel Method to Reveal Subtypes of TF Binding Motifs.	Regulatory Genomics	2004	DBLP DOI BibTeX RDF
38	Rahul Siddharthan, Erik van Nimwegen, Eric D. Siggia	PhyloGibbs: A Gibbs Sampler Incorporating Phylogenetic Information.	Regulatory Genomics	2004	DBLP DOI BibTeX RDF
37	Oscar Harari, Rocío Romero-Záliz, Cristina Rubio-Escudero, Igor Zwir	Fusion of Domain Knowledge for Dynamic Learning in Transcriptional Networks.	IDEAL	2006	DBLP DOI BibTeX RDF
37	Ignacio Ponzoni, Francisco Azuaje, Juan Carlos Augusto, David H. Glass	Inferring Adaptive Regulation Thresholds and Association Rules from Gene Expression Data through Combinatorial Optimization Learning.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF	machine-learning, decision trees, combinatorial optimization, gene expression data, genetic regulatory networks
37	Tie-Fei Liu, Wing-Kin Sung	Learning Gene Network Using Conditional Dependence.	ICTAI	2006	DBLP DOI BibTeX RDF	conditional dependence, conditional relative entropy, regulatory complex, Bayesian Networks, Gene Network