Search results for "Replica-Exchange"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
69	Yaohang Li, Michael Mascagni, Andrey Gorin	Decentralized Replica Exchange Parallel Tempering: An Efficient Implementation of Parallel Tempering Using MPI and SPRNG.	ICCSA (3)	2007	DBLP DOI BibTeX RDF	Parallel Tempering, Parallel Programming, Monte Carlo Methods
69	Zhen Li 0010, Manish Parashar	Grid-based asynchronous replica exchange.	GRID	2007	DBLP DOI BibTeX RDF
69	Maria Eleftheriou, Aleksandr Rayshubskiy, Jed W. Pitera, Blake G. Fitch, Ruhong Zhou, Robert S. Germain	Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L.	IPDPS	2006	DBLP DOI BibTeX RDF
49	André Luckow, Shantenu Jha, Joohyun Kim 0001, André Merzky, Bettina Schnor	Distributed Replica-Exchange Simulations on Production Environments Using SAGA and Migol.	eScience	2008	DBLP DOI BibTeX RDF	Migol, Replica-Exchange, Fault-Tolerance, Grid Computing, SAGA
45	Li Zhang, Manish Parashar, Emilio Gallicchio, Ronald M. Levy	Salsa: Scalable Asynchronous Replica Exchange for Parallel Molecular Dynamics Applications.	ICPP	2006	DBLP DOI BibTeX RDF
22	Jaewoon Jung, Chigusa Kobayashi, Yuji Sugita	Acceleration of generalized replica exchange with solute tempering simulations of large biological systems on massively parallel supercomputer.	J. Comput. Chem.	2023	DBLP DOI BibTeX RDF
22	Christopher Lockhart, Xingyu Luo, Audrey Olson, Bryan M. Delfing, Xavier E. Laracuente, Kenneth W. Foreman, Mikell Paige, Kylene Kehn-Hall, Dmitri K. Klimov	Can Free Energy Perturbation Simulations Coupled with Replica-Exchange Molecular Dynamics Study Ligands with Distributed Binding Sites?	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
22	Guang Lin, Christian Moya, Zecheng Zhang	B-DeepONet: An enhanced Bayesian DeepONet for solving noisy parametric PDEs using accelerated replica exchange SGLD.	J. Comput. Phys.	2023	DBLP DOI BibTeX RDF
22	Guanxun Li, Guang Lin, Zecheng Zhang, Quan Zhou	Fast Replica Exchange Stochastic Gradient Langevin Dynamics.	CoRR	2023	DBLP DOI BibTeX RDF
22	Miguel A. Soler, Nikola Minovski, Walter Rocchia, Sara Fortuna	Replica-exchange optimization of antibody fragments.	Comput. Biol. Chem.	2023	DBLP DOI BibTeX RDF
22	Mateusz Marcisz, Margrethe Gaardløs, Krzysztof K. Bojarski, Till Siebenmorgen, Martin Zacharias, Sergey A. Samsonov	Explicit solvent repulsive scaling replica exchange molecular dynamics (RS-REMD) in molecular modeling of protein-glycosaminoglycan complexes.	J. Comput. Chem.	2022	DBLP DOI BibTeX RDF
22	Bryan A. Raubenolt, Steven W. Rick	Simulation studies of polypeptoids using replica exchange with dynamical scaling and dihedral biasing.	J. Comput. Chem.	2022	DBLP DOI BibTeX RDF
22	Daniel Markthaler, Hamzeh Kraus, Niels Hansen	Binding free energies for the SAMPL8 CB8 "Drugs of Abuse" challenge from umbrella sampling combined with Hamiltonian replica exchange.	J. Comput. Aided Mol. Des.	2022	DBLP DOI BibTeX RDF
22	Salomé Rieder, Benjamin Ries, Kay Schaller, Candide Champion, Emília P. Barros, Philippe H. Hünenberger, Sereina Riniker	Replica-Exchange Enveloping Distribution Sampling Using Generalized AMBER Force-Field Topologies: Application to Relative Hydration Free-Energy Calculations for Large Sets of Molecules.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
22	Akie Kowaguchi, Katsuhiro Endo, Paul E. Brumby, Kentaro Nomura, Kenji Yasuoka	Optimal Replica-Exchange Molecular Simulations in Combination with Evolution Strategies.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
22	Guang Lin, Yating Wang, Zecheng Zhang	Multi-variance replica exchange SGMCMC for inverse and forward problems via Bayesian PINN.	J. Comput. Phys.	2022	DBLP DOI BibTeX RDF
22	Na Ou, Zecheng Zhang, Guang Lin	A replica exchange preconditioned Crank-Nicolson Langevin dynamic MCMC method for Bayesian inverse problems.	CoRR	2022	DBLP DOI BibTeX RDF
22	Hiroaki Inoue, Koji Hukushima, Toshiaki Omori	Estimating Distributions of Parameters in Nonlinear State Space Models with Replica Exchange Particle Marginal Metropolis-Hastings Method.	Entropy	2022	DBLP DOI BibTeX RDF
22	Ameya Harmalkar, Sai Pooja Mahajan, Jeffrey J. Gray	Induced fit with replica exchange improves protein complex structure prediction.	PLoS Comput. Biol.	2022	DBLP DOI BibTeX RDF
22	Arthur Voronin	Application and Optimization of Contact-Guided Replica Exchange Molecular Dynamics		2022	RDF
22	Chudong Xu, Shengdong Lu, Yongfeng Kong, Wanjie Xiong	The enhanced sampling in parallel finite-time dynamics method with replica exchange.	Comput. Phys. Commun.	2021	DBLP DOI BibTeX RDF
22	Jing Dong, Xin T. Tong	Replica Exchange for Non-Convex Optimization.	J. Mach. Learn. Res.	2021	DBLP BibTeX RDF
22	Martyna Maszota-Zieleniak, Mateusz Marcisz, Malgorzata M. Kogut, Till Siebenmorgen, Martin Zacharias, Sergey A. Samsonov	Evaluation of replica exchange with repulsive scaling approach for docking glycosaminoglycans.	J. Comput. Chem.	2021	DBLP DOI BibTeX RDF
22	Anji Babu Kapakayala, Nisanth N. Nair	Boosting the conformational sampling by combining replica exchange with solute tempering and well-sliced metadynamics.	J. Comput. Chem.	2021	DBLP DOI BibTeX RDF
22	Anupam Banerjee, Kuntal Pal, Pralay Mitra	An Evolutionary Profile Guided Greedy Parallel Replica-Exchange Monte Carlo Search Algorithm for Rapid Convergence in Protein Design.	IEEE ACM Trans. Comput. Biol. Bioinform.	2021	DBLP DOI BibTeX RDF
22	Mahdi Ghorbani, Phillip S. Hudson, Michael R. Jones, Félix Aviat, Rubén Meana-Pañeda, Jeffery B. Klauda, Bernard R. Brooks	A replica exchange umbrella sampling (REUS) approach to predict host-guest binding free energies in SAMPL8 challenge.	J. Comput. Aided Mol. Des.	2021	DBLP DOI BibTeX RDF
22	Steven W. Rick, Gregory J. Schwing, Christopher M. Summa	An Implementation of Replica Exchange with Dynamical Scaling for Efficient Large-Scale Simulations.	J. Chem. Inf. Model.	2021	DBLP DOI BibTeX RDF
22	Karnesh Jain, Othman Ghribi, Jerome Delhommelle	Folding Free-Energy Landscape of α-Synuclein (35-97) Via Replica Exchange Molecular Dynamics.	J. Chem. Inf. Model.	2021	DBLP DOI BibTeX RDF
22	Arthur Voronin, Alexander Schug	pyrexMD: Workflow-Orientated Python Package for Replica Exchange Molecular Dynamics.	J. Open Source Softw.	2021	DBLP DOI BibTeX RDF
22	Pawel Krupa, Agnieszka S. Karczynska, Magdalena A. Mozolewska, Adam Liwo, Cezary Czaplewski	UNRES-Dock - protein-protein and peptide-protein docking by coarse-grained replica-exchange MD simulations.	Bioinform.	2021	DBLP DOI BibTeX RDF
22	Guang Lin, Christian Moya, Zecheng Zhang	Accelerated replica exchange stochastic gradient Langevin diffusion enhanced Bayesian DeepONet for solving noisy parametric PDEs.	CoRR	2021	DBLP BibTeX RDF
22	Guang Lin, Yating Wang, Zecheng Zhang	Multi-variance replica exchange stochastic gradient MCMC for inverse and forward Bayesian physics-informed neural network.	CoRR	2021	DBLP BibTeX RDF
22	Wei Deng 0002, Qi Feng 0005, Georgios Karagiannis, Guang Lin, Faming Liang	Accelerating Convergence of Replica Exchange Stochastic Gradient MCMC via Variance Reduction.	ICLR	2021	DBLP BibTeX RDF
22	Till Siebenmorgen, Michael Engelhard, Martin Zacharias	Prediction of protein-protein complexes using replica exchange with repulsive scaling.	J. Comput. Chem.	2020	DBLP DOI BibTeX RDF
22	Till Siebenmorgen, Martin Zacharias	Efficient Refinement and Free Energy Scoring of Predicted Protein-Protein Complexes Using Replica Exchange with Repulsive Scaling.	J. Chem. Inf. Model.	2020	DBLP DOI BibTeX RDF
22	Keivan Dabiri, Mehrdad Malekmohammadi, Ali Sheikholeslami, Hirotaka Tamura	Replica Exchange MCMC Hardware With Automatic Temperature Selection and Parallel Trial.	IEEE Trans. Parallel Distributed Syst.	2020	DBLP DOI BibTeX RDF
22	Yi Chen, Jinglin Chen, Jing Dong 0007, Jian Peng 0001, Zhaoran Wang 0001	Accelerating Nonconvex Learning via Replica Exchange Langevin Diffusion.	CoRR	2020	DBLP BibTeX RDF
22	Wei Deng 0002, Qi Feng 0005, Georgios Karagiannis, Guang Lin, Faming Liang	Accelerating Convergence of Replica Exchange Stochastic Gradient MCMC via Variance Reduction.	CoRR	2020	DBLP BibTeX RDF
22	Wei Deng 0002, Qi Feng 0005, Liyao Gao, Faming Liang, Guang Lin	Non-convex Learning via Replica Exchange Stochastic Gradient MCMC.	CoRR	2020	DBLP BibTeX RDF
22	Wenyi Zhang 0003, Eric W. Bell, Minghao Yin, Yang Zhang 0040	EDock: blind protein-ligand docking by replica-exchange monte carlo simulation.	J. Cheminformatics	2020	DBLP DOI BibTeX RDF
22	Rui Luo 0001, Qiang Zhang, Yaodong Yang 0001, Jun Wang 0012	Replica-Exchange Nosé-Hoover Dynamics for Bayesian Learning on Large Datasets.	NeurIPS	2020	DBLP BibTeX RDF
22	Wei Deng 0002, Qi Feng 0005, Liyao Gao, Faming Liang, Guang Lin	Non-convex Learning via Replica Exchange Stochastic Gradient MCMC.	ICML	2020	DBLP BibTeX RDF
22	Junchao Xia, William F. Flynn, Emilio Gallicchio, Keith Uplinger, Jonathan D. Armstrong, Stefano Forli, Arthur J. Olson, Ronald M. Levy	Massive-Scale Binding Free Energy Simulations of HIV Integrase Complexes Using Asynchronous Replica Exchange Framework Implemented on the IBM WCG Distributed Network.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
22	Rui Luo 0001, Qiang Zhang, Yaodong Yang 0001, Jun Wang 0012	Replica-exchange Nosé-Hoover dynamics for Bayesian learning on large datasets.	CoRR	2019	DBLP BibTeX RDF
22	Wangdong Deng, Shotaro Kamiya, Koji Yamamoto 0001, Takayuki Nishio, Masahiro Morikura	Replica Exchange Spatial Adaptive Play for Channel Allocation in Cognitive Radio Networks.	VTC Spring	2019	DBLP DOI BibTeX RDF
22	Yi Chen, Jinglin Chen, Jing Dong 0007, Jian Peng 0001, Zhaoran Wang 0001	Accelerating Nonconvex Learning via Replica Exchange Langevin diffusion.	ICLR (Poster)	2019	DBLP BibTeX RDF
22	Attila Laszlo Boer	Implementation of the replica-exchange Wang-Landau sampling on Graphics Processing Units (GPUs).	Comput. Phys. Commun.	2018	DBLP DOI BibTeX RDF
22	Shingo Ito, Dmitri G. Fedorov, Yuko Okamoto, Stephan Irle	Implementation of replica-exchange umbrella sampling in GAMESS.	Comput. Phys. Commun.	2018	DBLP DOI BibTeX RDF
22	Richard Platania, Shayan Shams, Chui-Hui Chiu, Nayong Kim, Joohyun Kim 0001, Seung-Jong Park	Hadoop-based replica exchange over heterogeneous distributed cyberinfrastructures.	Concurr. Comput. Pract. Exp.	2017	DBLP DOI BibTeX RDF
22	Kuo-Hao Lee, Jianhan Chen	Efficacy of independence sampling in replica exchange simulations of ordered and disordered proteins.	J. Comput. Chem.	2017	DBLP DOI BibTeX RDF
22	Agnieszka S. Karczynska, Cezary Czaplewski, Pawel Krupa, Magdalena A. Mozolewska, Keehyoung Joo, Jooyoung Lee 0002, Adam Liwo	Ergodicity and model quality in template-restrained canonical and temperature/Hamiltonian replica exchange coarse-grained molecular dynamics simulations of proteins.	J. Comput. Chem.	2017	DBLP DOI BibTeX RDF
22	Mark A. Olson, Michael S. Lee, In-Chul Yeh	Membrane insertion of fusion peptides from Ebola and Marburg viruses studied by replica-exchange molecular dynamics simulations.	J. Comput. Chem.	2017	DBLP DOI BibTeX RDF
22	Michio Iwaoka, Toshiki Suzuki, Yuya Shoji, Kenichi Dedachi, Taku Shimosato, Toshiya Minezaki, Hironobu Hojo, Hiroyuki Onuki, Hiroshi Hirota	Development of SAAP3D force field and the application to replica-exchange Monte Carlo simulation for chignolin and C-peptide.	J. Comput. Aided Mol. Des.	2017	DBLP DOI BibTeX RDF
22	Hongrui Wang, Hongwei Liu, Leixin Cai, Caixia Wang, Qiang Lv	Using the multi-objective optimization replica exchange Monte Carlo enhanced sampling method for protein-small molecule docking.	BMC Bioinform.	2017	DBLP DOI BibTeX RDF
22	Wasinee Khuntawee, Manaschai Kunaseth, Chompoonut Rungnim, Suradej Intagorn, Peter Wolschann, Nawee Kungwan, Thanyada Rungrotmongkol, Supot Hannongbua	Comparison of Implicit and Explicit Solvation Models for Iota-Cyclodextrin Conformation Analysis from Replica Exchange Molecular Dynamics.	J. Chem. Inf. Model.	2017	DBLP DOI BibTeX RDF
22	Zhangwei Li, Xiaohu Hao, Guijun Zhang	基于副本交换的局部增强差分进化蛋白质结构从头预测方法 (Replica Exchange Based Local Enhanced Differential Evolution Searching Method in Ab-initio Protein Structure Prediction).	计算机科学	2017	DBLP DOI BibTeX RDF
22	Shingo Ito, Stephan Irle, Yuko Okamoto	Implementation of replica-exchange umbrella sampling in the DFTB+ semiempirical quantum chemistry package.	Comput. Phys. Commun.	2016	DBLP DOI BibTeX RDF
22	David Mignon, Thomas Simonson	Comparing three stochastic search algorithms for computational protein design: Monte Carlo, replica exchange Monte Carlo, and a multistart, steepest-descent heuristic.	J. Comput. Chem.	2016	DBLP DOI BibTeX RDF
22	Changjun Chen, Yanzhao Huang	Walking freely in the energy and temperature space by the modified replica exchange molecular dynamics method.	J. Comput. Chem.	2016	DBLP DOI BibTeX RDF
22	Pongsakorn Kanjanatanin, Rath Pichyangkura, Surasak Chunsrivirot	Replica exchange molecular dynamics simulations reveal the structural and molecular properties of levan-type fructo-oligosaccharides of various chain lengths.	BMC Bioinform.	2016	DBLP DOI BibTeX RDF
22	Antons Treikalis, André Merzky, Haoyuan Chen, Tai-Sung Lee, Darrin M. York, Shantenu Jha	RepEx: A Flexible Framework for Scalable Replica Exchange Molecular Dynamics Simulations.	CoRR	2016	DBLP BibTeX RDF
22	Teng Liu, Qingzhong Li, Lanju Kong, Lei Liu 0003, Li-zhen Cui	Optimizing Replica Exchange Strategy for Load Balancing in Multienant Databases.	WAIM (2)	2016	DBLP DOI BibTeX RDF
22	Antons Treikalis, André Merzky, Haoyuan Chen, Tai-Sung Lee, Darrin M. York, Shantenu Jha	RepEx: A Flexible Framework for Scalable Replica Exchange Molecular Dynamics Simulations.	ICPP	2016	DBLP DOI BibTeX RDF
22	Emilio Gallicchio, Junchao Xia, William F. Flynn, Baofeng Zhang, Sade Samlalsingh, Ahmet Mentes, Ronald M. Levy	Asynchronous replica exchange software for grid and heterogeneous computing.	Comput. Phys. Commun.	2015	DBLP DOI BibTeX RDF
22	Ryo Urano, Yuko Okamoto	Designed-walk replica-exchange method for simulations of complex systems.	Comput. Phys. Commun.	2015	DBLP DOI BibTeX RDF
22	Liang-Chun Liu, Jer-Lai Kuo	A LAMMPS implementation of volume-temperature replica exchange molecular dynamics.	Comput. Phys. Commun.	2015	DBLP DOI BibTeX RDF
22	Sunhwan Jo, Wei Jiang	A generic implementation of replica exchange with solute tempering (REST2) algorithm in NAMD for complex biophysical simulations.	Comput. Phys. Commun.	2015	DBLP DOI BibTeX RDF
22	Ryo Urano, Yuko Okamoto	Deterministic replica-exchange method without pseudo random numbers for simulations of complex systems.	Comput. Phys. Commun.	2015	DBLP DOI BibTeX RDF
22	Junchao Xia, William F. Flynn, Emilio Gallicchio, Bin W. Zhang, Peng He, Zhiqiang Tan, Ronald M. Levy	Large-scale asynchronous and distributed multidimensional replica exchange molecular simulations and efficiency analysis.	J. Comput. Chem.	2015	DBLP DOI BibTeX RDF
22	Nayong Kim, Richard Platania, Wei Huang, Chris Knight 0001, Tom Keyes, Seung-Jong Park, Joohyun Kim 0001	Enabling Large-Scale Biomolecular Conformation Search with Replica Exchange Statistical Temperature Molecular Dynamics (RESTMD) over HPC and Cloud Computing Resources.	AINA Workshops	2015	DBLP DOI BibTeX RDF
22	Weihong Zhang, Jianhan Chen	Replica exchange with guided annealing for accelerated sampling of disordered protein conformations.	J. Comput. Chem.	2014	DBLP DOI BibTeX RDF
22	Katja Ostermeir, Martin Zacharias	Hamiltonian replica-exchange simulations with adaptive biasing of peptide backbone and side chain dihedral angles.	J. Comput. Chem.	2014	DBLP DOI BibTeX RDF
22	Hsin-Lin Chiang, Chun-Jung Chen, Hisashi Okumura, Chin-Kun Hu	Transformation between α-helix and β-sheet structures of one and two polyglutamine peptides in explicit water molecules by replica-exchange molecular dynamics simulations.	J. Comput. Chem.	2014	DBLP DOI BibTeX RDF
22	Pai-Chi Li, Naoyuki Miyashita, Wonpil Im, Satoshi Ishido, Yuji Sugita	Multidimensional umbrella sampling and replica-exchange molecular dynamics simulations for structure prediction of transmembrane helix dimers.	J. Comput. Chem.	2014	DBLP DOI BibTeX RDF
22	Manuel P. Luitz, Martin Zacharias	Protein-Ligand Docking Using Hamiltonian Replica Exchange Simulations with Soft Core Potentials.	J. Chem. Inf. Model.	2014	DBLP DOI BibTeX RDF
22	Cameron Abrams, Giovanni Bussi	Enhanced Sampling in Molecular Dynamics Using Metadynamics, Replica-Exchange, and Temperature-Acceleration.	Entropy	2014	DBLP DOI BibTeX RDF
22	Mark A. Olson, Michael S. Lee	Application of replica exchange umbrella sampling to protein structure refinement of nontemplate models.	J. Comput. Chem.	2013	DBLP DOI BibTeX RDF
22	Yannick G. Spill, Guillaume Bouvier, Michael Nilges	A convective replica-exchange method for sampling new energy basins.	J. Comput. Chem.	2013	DBLP DOI BibTeX RDF
22	Satoru G. Itoh, Hisashi Okumura	Coulomb replica-exchange method: Handling electrostatic attractive and repulsive forces for biomolecules.	J. Comput. Chem.	2013	DBLP DOI BibTeX RDF
22	Yannick G. Spill, Guillaume Bouvier, Michael Nilges	Erratum: A convective replica-exchange method for sampling new energy basins.	J. Comput. Chem.	2013	DBLP DOI BibTeX RDF
22	Hironori Kokubo, Toshimasa Tanaka, Yuko Okamoto	Two-dimensional replica-exchange method for predicting protein-ligand binding structures.	J. Comput. Chem.	2013	DBLP DOI BibTeX RDF
22	Kai Wang, John D. Chodera, Yanzhi Yang, Michael R. Shirts	Identifying ligand binding sites and poses using GPU-accelerated Hamiltonian replica exchange molecular dynamics.	J. Comput. Aided Mol. Des.	2013	DBLP DOI BibTeX RDF
22	Hiqmet Kamberaj	Replica Exchange using q-Gaussian Swarm Quantum Particle Intelligence Method.	CoRR	2013	DBLP BibTeX RDF
22	Brian K. Radak, Tai-Sung Lee, Peng He, Melissa Romanus, Ole Weidner, Wei Dai, Emilio Gallicchio, Nan-Jie Deng, Darrin M. York, Ronald M. Levy, Shantenu Jha	A framework for flexible and scalable replica-exchange on production distributed CI.	XSEDE	2013	DBLP DOI BibTeX RDF
22	Maritza Smith-Romero, Jin Niu, Alvin Allen, Abrahim Khosravi, Shuju Bai	Implementing replica exchange molecular dynamics using work queue.	BIBM	2013	DBLP DOI BibTeX RDF
22	Hisanari Otsu, Yonghao Yue, Qiming Hou, Kei Iwasaki, Yoshinori Dobashi, Tomoyuki Nishita	Replica exchange light transport on relaxed distributions.	SIGGRAPH Posters	2013	DBLP DOI BibTeX RDF
22	H.-H. Wu, C.-C. Chen, Chi-Ming Chen	Replica exchange Monte-Carlo simulations of helix bundle membrane proteins: rotational parameters of helices.	J. Comput. Aided Mol. Des.	2012	DBLP DOI BibTeX RDF
22	Jonathan Gross, Wolfhard Janke, Michael Bachmann	Massively parallelized replica-exchange simulations of polymers on GPUs.	Comput. Phys. Commun.	2011	DBLP DOI BibTeX RDF
22	Hironori Kokubo, Toshimasa Tanaka, Yuko Okamoto	Ab Initio prediction of protein-ligand binding structures by replica-exchange umbrella sampling simulations.	J. Comput. Chem.	2011	DBLP DOI BibTeX RDF
22	Tsuyoshi Terakawa, Tomoshi Kameda, Shoji Takada	On easy implementation of a variant of the replica exchange with solute tempering in GROMACS.	J. Comput. Chem.	2011	DBLP DOI BibTeX RDF
22	Srinivasaraghavan Kannan, Wolfgang Sippl, Martin Zacharias	Application of biasing-potential replica exchange simulations for loop modeling and refinement of proteins in explicit solvent.	J. Cheminformatics	2011	DBLP DOI BibTeX RDF
22	Hisashi Okumura, Emilio Gallicchio, Ronald M. Levy	Conformational populations of ligand-sized molecules by replica exchange molecular dynamics and temperature reweighting.	J. Comput. Chem.	2010	DBLP DOI BibTeX RDF
22	Jory Z. Ruscio, Nicolas L. Fawzi, Teresa Head-Gordon	How hot? Systematic convergence of the replica exchange method using multiple reservoirs.	J. Comput. Chem.	2010	DBLP DOI BibTeX RDF
22	Leonidas Kapsokalivas, Kathleen Steinhöfel	A Replica Exchange Monte Carlo Algorithm for the Optimization of Secondary Structure Packing in Proteins.	EvoBIO	2010	DBLP DOI BibTeX RDF
22	Evgeni S. Penev, Sotiria Lampoudi, Joan-Emma Shea	TiReX: Replica-exchange molecular dynamics using Tinker.	Comput. Phys. Commun.	2009	DBLP DOI BibTeX RDF
22	Mikolai Fajer, Robert V. Swift, James Andrew McCammon	Using multistate free energy techniques to improve the efficiency of replica exchange accelerated molecular dynamics.	J. Comput. Chem.	2009	DBLP DOI BibTeX RDF
22	Shinya Kitaoka, Yoshifumi Kitamura, Fumio Kishino	Replica Exchange Light Transport.	Comput. Graph. Forum	2009	DBLP DOI BibTeX RDF
22	Emilio Gallicchio, Ronald M. Levy, Manish Parashar	Asynchronous replica exchange for molecular simulations.	J. Comput. Chem.	2008	DBLP DOI BibTeX RDF
22	Giovanni Bussi	A simple asynchronous replica-exchange implementation	CoRR	2008	DBLP BibTeX RDF
22	José D. Faraldo-Gómez, Benoît Roux	Characterization of conformational equilibria through Hamiltonian and temperature replica-exchange simulations: Assessing entropic and environmental effects.	J. Comput. Chem.	2007	DBLP DOI BibTeX RDF