Search results for "SBML"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
181	Seung-Hyun Jung, Tae-Sung Jung, Tae-Kyung Kim, Kyoung-Ran Kim, Jae-Soo Yoo, Wan-Sup Cho	An Efficient Storage Model for the SBML Documents Using Object Databases.	VDMB	2006	DBLP DOI BibTeX RDF	Ontology, Bioinformatics, System Biology, Object Database, Pathway, SBML
107	Federica Ciocchetta, Corrado Priami, Paola Quaglia	An Automatic Translation of SBML into Beta-Binders.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	modeling, Process algebras, systems biology, biological systems, translation tool, Systems Biology Markup Language (SBML)
97	Yiannis Kanaris, Konstantinos Moutselos, Aristotelis Chatziioannou, Ilias Maglogiannis, Fragiskos N. Kolisis	Building in-silico pathway SBML models from heterogeneous sources.	BIBE	2008	DBLP DOI BibTeX RDF
78	Claudio Eccher, Paola Lecca	Translating SBML Models into the Stochastic pi-Calculus for Stochastic Simulation.	Trans. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
78	Tae-Sung Jung, Kyoung-Ran Kim, Seung-Hyun Jung, Tae-Kyung Kim, Myung-Sang Ahn, Jong-Hak Lee, Wan-Sup Cho	SPDBS: An SBML-Based Biochemical Pathway Database System.	ICIC (3)	2006	DBLP DOI BibTeX RDF
78	Zhupeng Dong, Xiaoju Dong, Xian Xu 0001, Yuxi Fu, Zhizhou Zhang 0003, Lin He 0007	An Implementation for Mapping SBML to BioSPI.	FSKD (2)	2005	DBLP DOI BibTeX RDF
78	Andrew Finney	Developing SBML Beyond Level 2: Proposals for Development.	CMSB	2004	DBLP DOI BibTeX RDF
74	Oliver Ruebenacker, Ion I. Moraru, James C. Schaff, Michael L. Blinov	Kinetic Modeling Using BioPAX Ontology.	BIBM	2007	DBLP DOI BibTeX RDF
74	Akira Funahashi, Yukiko Matsuoka, Akiya Jouraku, Hiroaki Kitano, Norihiro Kikuchi	CellDesigner: a modeling tool for biochemical networks.	WSC	2006	DBLP DOI BibTeX RDF
74	Manuel Corpas	Integrating Simulation Packages via Systems Biology Mark-Up Language.	CMSB	2003	DBLP DOI BibTeX RDF
60	Tommaso Mazza	Towards a Complete Covering of SBML Functionalities.	Workshop on Membrane Computing	2007	DBLP DOI BibTeX RDF
47	Ranjit Randhawa, Clifford A. Shaffer, John J. Tyson	Fusing and composing macromolecular regulatory network models.	SpringSim (2)	2007	DBLP BibTeX RDF	pathway models, computational biology, systems biology markup language (SBML)
47	Yasunori Osana, Tomonori Fukushima, Masato Yoshimi, Yow Iwaoka, Yuichiro Shibata, Hiroaki Kitano, Akira Funahashi, Noriko Hiroi, Hideharu Amano	An FPGA-Based, Multi-model Simulation Method for Biochemical Systems.	IPDPS	2005	DBLP DOI BibTeX RDF	Biochemical simulation, FPGA, ODE, SBML, Multimodel
46	Zhike Zi, Yanan Zheng, Ann E. Rundell, Edda Klipp	SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
46	Allyson L. Lister, Matthew R. Pocock, Anil Wipat	Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models.	J. Integr. Bioinform.	2007	DBLP DOI BibTeX RDF
41	JinHo Ahn	An Efficient Algorithm for Removing Useless Logged Messages in SBML Protocols.	ICDCIT	2005	DBLP DOI BibTeX RDF
28	Pengyuan Wang 0005, Ranjit Randhawa, Clifford A. Shaffer, Yang Cao 0001, William T. Baumann	Converting macromolecular regulatory models from deterministic to stochastic formulation.	SpringSim	2008	DBLP DOI BibTeX RDF	pathway models, computational biology, cell cycle, systems biology markup language (SBML)
23	Jin Xu	SBMLKinetics: a tool for annotation-independent classification of reaction kinetics for SBML models.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
23	Jin Xu, Jessie Jiang, Herbert M. Sauro	SBMLDiagrams: a python package to process and visualize SBML layout and render.	Bioinform.	2023	DBLP DOI BibTeX RDF
23	Woosub Shin, John H. Gennari, Joseph L. Hellerstein, Herbert M. Sauro	An automated model annotation system (AMAS) for SBML models.	Bioinform.	2023	DBLP DOI BibTeX RDF
23	Ciaran M. Welsh, Jin Xu, Lucian P. Smith, Matthias König 0003, Kiri Choi, Herbert M. Sauro	libRoadRunner 2.0: a high performance SBML simulation and analysis library.	Bioinform.	2023	DBLP DOI BibTeX RDF
23	José Pinto 0007, Rafael S. Costa, Leonardo Alexandre, João Ramos, Rui Oliveira 0002	SBML2HYB: a Python interface for SBML compatible hybrid modeling.	Bioinform.	2023	DBLP DOI BibTeX RDF
23	Mayalen Etcheverry, Michael Levin, Clément Moulin-Frier, Pierre-Yves Oudeyer	SBMLtoODEjax: efficient simulation and optimization of ODE SBML models in JAX.	CoRR	2023	DBLP DOI BibTeX RDF
23	James C. Schaff, Anuradha Lakshminarayana, Robert F. Murphy, Frank T. Bergmann, Akira Funahashi, Devin P. Sullivan, Lucian P. Smith	SBML level 3 package: spatial processes, version 1, release 1.	J. Integr. Bioinform.	2023	DBLP DOI BibTeX RDF
23	Joachim Niehren, Cédric Lhoussaine, Athénaïs Vaginay	Core SBML and Its Formal Semantics.	CMSB	2023	DBLP DOI BibTeX RDF
23	Lorenzo Contento, Paul Stapor, Daniel Weindl, Jan Hasenauer	A More Expressive Spline Representation for SBML Models Improves Code Generation Performance in AMICI.	CMSB	2023	DBLP DOI BibTeX RDF
23	Ciaran M. Welsh, Jin Xu, Lucian P. Smith, Matthias König 0003, Kiri Choi, Herbert M. Sauro	libRoadRunner 2.0: A High-Performance SBML Simulation and Analysis Library.	CoRR	2022	DBLP DOI BibTeX RDF
23	Hasan Balci, Ugur Dogrusoz, Yusuf Ziya Ozgul, Perman Atayev	SyBLaRS: A web service for laying out, rendering and mining biological maps in SBGN, SBML and more.	PLoS Comput. Biol.	2022	DBLP DOI BibTeX RDF
23	Athénaïs Vaginay, Taha Boukhobza, Malika Smaïl-Tabbone	From quantitative SBML models to Boolean networks.	Appl. Netw. Sci.	2022	DBLP DOI BibTeX RDF
23	Jakob Vanhoefer, Marta R. A. Matos, Dilan Pathirana, Yannik Schälte, Jan Hasenauer	yaml2sbml: Human-readable and -writable specification of ODE models and their conversion to SBML.	J. Open Source Softw.	2021	DBLP DOI BibTeX RDF
23	Athénaïs Vaginay, Taha Boukhobza, Malika Smaïl-Tabbone	From Quantitative SBML Models to Boolean Networks.	COMPLEX NETWORKS	2021	DBLP DOI BibTeX RDF
23	J. Kyle Medley, Joseph L. Hellerstein, Herbert M. Sauro	libsbmljs - Enabling web-based SBML tools.	Biosyst.	2020	DBLP DOI BibTeX RDF
23	Lucian P. Smith, Stuart L. Moodie, Frank T. Bergmann, Colin S. Gillespie, Sarah M. Keating, Matthias König 0003, Chris J. Myers, Maciek J. Swat, Darren J. Wilkinson, Michael Hucka	Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1.	J. Integr. Bioinform.	2020	DBLP DOI BibTeX RDF
23	Fengkai Zhang, Lucian P. Smith, Michael L. Blinov, James R. Faeder, William S. Hlavacek, José Juan Tapia, Sarah M. Keating, Nicolas Rodriguez 0001, Andreas Dräger, Leonard A. Harris, Andrew Finney, Bin Hu, Michael Hucka, Martin Meier-Schellersheim	Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2.	J. Integr. Bioinform.	2020	DBLP DOI BibTeX RDF
23	Giuseppe Agapito	Standards and Models for Biological Data: SBML.	Encyclopedia of Bioinformatics and Computational Biology (1)	2019	DBLP DOI BibTeX RDF
23	Steve Ruggiero, Ashlee N. Ford Versypt	SMBLtoODEpy: A software program for converting SBML models into ODE models in Python.	J. Open Source Softw.	2019	DBLP DOI BibTeX RDF
23	Michael Hucka, Frank T. Bergmann, Claudine Chaouiya, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Matthias König 0003, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Rahuman S. Malik-Sheriff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson, Fengkai Zhang	The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.	J. Integr. Bioinform.	2019	DBLP DOI BibTeX RDF
23	Thomas S. Ligon, Fabian Fröhlich, Oana Chis, Julio R. Banga, Eva Balsa-Canto, Jan Hasenauer	GenSSI 2.0: multi-experiment structural identifiability analysis of SBML models.	Bioinform.	2018	DBLP DOI BibTeX RDF
23	Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson	The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.	J. Integr. Bioinform.	2018	DBLP DOI BibTeX RDF
23	Fengkai Zhang, Martin Meier-Schellersheim	SBML Level 3 package: Multistate, Multicomponent and Multicompartment Species, Version 1, Release 1.	J. Integr. Bioinform.	2018	DBLP DOI BibTeX RDF
23	Frank T. Bergmann, Sarah M. Keating, Ralph Gauges, Sven Sahle, Katja Wengler	SBML Level 3 package: Render, Version 1, Release 1.	J. Integr. Bioinform.	2018	DBLP DOI BibTeX RDF
23	Brett G. Olivier, Frank T. Bergmann	SBML Level 3 Package: Flux Balance Constraints version 2.	J. Integr. Bioinform.	2018	DBLP DOI BibTeX RDF
23	Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson	The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.	J. Integr. Bioinform.	2018	DBLP DOI BibTeX RDF
23	Jinho Ahn	SBML Protocol for Conquering Simultaneous Failures with Group Dissemination Functionality.	J. Inf. Sci. Eng.	2017	DBLP BibTeX RDF
23	Stephanie Evans, Kieran Alden, Lourdes Cucurull-Sanchez, Christopher Larminie, Mark C. Coles, Marika C. Kullberg, Jon Timmis	ASPASIA: A toolkit for evaluating the effects of biological interventions on SBML model behaviour.	PLoS Comput. Biol.	2017	DBLP DOI BibTeX RDF
23	Marzio Pennisi, Giulia Russo, Giuseppe Sgroi, Giuseppe Parasiliti, Francesco Pappalardo 0001	2DIs: A SBML Compliant Web Platform for the Design and Modeling of Immune System Interactions.	ICIC (2)	2017	DBLP DOI BibTeX RDF
23	Harold F. Gómez, Michael Hucka, Sarah M. Keating, German Nudelman, Dagmar Iber, Stuart C. Sealfon	MOCCASIN: converting MATLAB ODE models to SBML.	Bioinform.	2016	DBLP DOI BibTeX RDF
23	Michael Hucka, Lucian P. Smith	SBML Level 3 package: Groups, Version 1 Release 1.	J. Integr. Bioinform.	2016	DBLP DOI BibTeX RDF
23	Rebekka Alm, Dagmar Waltemath, Markus Wolfien, Olaf Wolkenhauer, Ron Henkel	Annotation-based feature extraction from sets of SBML models.	J. Biomed. Semant.	2015	DBLP DOI BibTeX RDF
23	Endre T. Somogyi, Jean-Marie Bouteiller, James A. Glazier, Matthias König 0003, J. Kyle Medley, Maciej H. Swat, Herbert M. Sauro	libRoadRunner: a high performance SBML simulation and analysis library.	Bioinform.	2015	DBLP DOI BibTeX RDF
23	Endre T. Somogyi, Jean-Marie Bouteiller, James A. Glazier, Matthias König 0003, J. Kyle Medley, Maciej H. Swat, Herbert M. Sauro	libRoadRunner: A High Performance SBML Simulation and Analysis Library.	CoRR	2015	DBLP BibTeX RDF
23	Hui-Ju Katherine Chiang, François Fages, Jie-Hong Roland Jiang, Sylvain Soliman	Hybrid Simulations of Heterogeneous Biochemical Models in SBML.	ACM Trans. Model. Comput. Simul.	2015	DBLP DOI BibTeX RDF
23	Claudine Chaouiya, Sarah M. Keating, Duncan Bérenguier, Aurélien Naldi, Denis Thieffry, Martijn P. van Iersel, Nicolas Le Novère, Tomás Helikar	The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1.	J. Integr. Bioinform.	2015	DBLP DOI BibTeX RDF
23	Brett G. Olivier, Frank T. Bergmann	The Systems Biology Markup Language (SBML) Level 3 Package: Flux Balance Constraints.	J. Integr. Bioinform.	2015	DBLP DOI BibTeX RDF
23	Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson	Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions.	J. Integr. Bioinform.	2015	DBLP DOI BibTeX RDF
23	Michael Hucka, Frank T. Bergmann, Stefan Hoops, Sarah M. Keating, Sven Sahle, James C. Schaff, Lucian P. Smith, Darren J. Wilkinson	The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.	J. Integr. Bioinform.	2015	DBLP DOI BibTeX RDF
23	Ralph Gauges, Ursula Rost, Sven Sahle, Katja Wengler, Frank Thomas Bergmann	The Systems Biology Markup Language (SBML) Level 3 Package: Layout, Version 1 Core.	J. Integr. Bioinform.	2015	DBLP DOI BibTeX RDF
23	Lucian Paul Smith, Michael Hucka, Stefan Hoops, Andrew Finney, Martin Ginkel, Chris J. Myers, Ion I. Moraru, Wolfram Liebermeister	SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3.	J. Integr. Bioinform.	2015	DBLP DOI BibTeX RDF
23	Abir Rezgui, Morgan Madec, Christophe Lallement, Jacques Haiech	Integration of SBML models for the description of biological system in a lab-on-chip.	MIXDES	2015	DBLP DOI BibTeX RDF
23	Michael Hucka	Systems Biology Markup Language (SBML).	Encyclopedia of Computational Neuroscience	2014	DBLP DOI BibTeX RDF
23	Chen Li 0007, Masao Nagasaki, Emi Ikeda, Yayoi Sekiya, Satoru Miyano	CSML2SBML: A novel tool for converting quantitative biological pathway models from CSML into SBML.	Biosyst.	2014	DBLP DOI BibTeX RDF
23	Max Flöttmann, Jannis Uhlendorf, Till Scharp, Edda Klipp, Thomas W. Spiesser	SensA: web-based sensitivity analysis of SBML models.	Bioinform.	2014	DBLP DOI BibTeX RDF
23	Lucian P. Smith, Erik Butterworth, James B. Bassingthwaighte, Herbert M. Sauro	SBML and CellML translation in Antimony and JSim.	Bioinform.	2014	DBLP DOI BibTeX RDF
23	Giovanni Pardini, Paolo Milazzo, Andrea Maggiolo-Schettini	Identification of components in biochemical pathways: extensive application to SBML models.	Nat. Comput.	2014	DBLP DOI BibTeX RDF
23	Rebekka Alm, Dagmar Waltemath, Olaf Wolkenhauer, Ron Henkel	Annotation-Based Feature Extraction from Sets of SBML Models.	DILS	2014	DBLP DOI BibTeX RDF
23	Jinho Ahn	How to lift SBML's limitation on fault-tolerance based on group-based communication links (WIP).	SummerSim	2014	DBLP BibTeX RDF
23	Jinho Ahn, Yoohwan Kim	Effective SBML Protocol for Tolerating Concurrent Failures Based on Broadcast Networks.	DASC	2014	DBLP DOI BibTeX RDF
23	Sebastian Vlaic, Bianca Hoffmann, Peter Kupfer, Michael Weber, Andreas Dräger	GRN2SBML: automated encoding and annotation of inferred gene regulatory networks complying with SBML.	Bioinform.	2013	DBLP DOI BibTeX RDF
23	Thomas Sütterlin, Christoph Kolb, Hartmut Dickhaus, Dirk Jäger, Niels Grabe	Bridging the scales: semantic integration of quantitative SBML in graphical multi-cellular models and simulations with EPISIM and COPASI.	Bioinform.	2013	DBLP DOI BibTeX RDF
23	Hiromu Takizawa, Kazushige Nakamura, Akito Tabira, Yoichi Chikahara, Tatsuhiro Matsui, Noriko Hiroi, Akira Funahashi	LibSBMLSim: a reference implementation of fully functional SBML simulator.	Bioinform.	2013	DBLP DOI BibTeX RDF
23	Andrea Maggiolo-Schettini, Paolo Milazzo, Giovanni Pardini	Application of a Semi-automatic Algorithm for Identification of Molecular Components in SBML Models.	WIVACE	2013	DBLP DOI BibTeX RDF
23	Daniele Ramazzotti, Carlo Maj, Marco Antoniotti	A Model of Colonic Crypts using SBML Spatial.	WIVACE	2013	DBLP DOI BibTeX RDF
23	Dalila Hamami, Baghdad Atmani	SBML for optimizing decision support's tools.	CoRR	2013	DBLP BibTeX RDF
23	Claudine Chaouiya, Duncan Bérenguier, Sarah M. Keating, Aurélien Naldi, Martijn P. van Iersel, Nicolas Rodriguez 0001, Andreas Dräger, Finja Büchel, Thomas Cokelaer, Bryan M. Kowal, Benjamin Wicks, Emanuel J. V. Gonçalves, Julien Dorier, Michel Page, Pedro T. Monteiro 0001, Axel von Kamp, Ioannis Xenarios, Hidde de Jong, Michael Hucka, Steffen Klamt, Denis Thieffry, Nicolas Le Novère, Julio Saez-Rodriguez, Tomás Helikar	SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.	BMC Syst. Biol.	2013	DBLP DOI BibTeX RDF
23	Sebastian Nähring, Roland Ewald, Adelinde M. Uhrmacher, Carsten Maus	From standardized modeling formats to modeling languages and back - An exploration based on SBML and ML-Rules.	WSC	2013	DBLP DOI BibTeX RDF
23	Finja Büchel, Clemens Wrzodek, Florian Mittag, Andreas Dräger, Johannes Eichner, Nicolas Rodriguez 0001, Nicolas Le Novère, Andreas Zell	Qualitative translation of relations from BioPAX to SBML qual.	Bioinform.	2012	DBLP DOI BibTeX RDF
23	Matthias König 0003, Andreas Dräger, Hermann-Georg Holzhütter	CySBML: a Cytoscape plugin for SBML.	Bioinform.	2012	DBLP DOI BibTeX RDF
23	Sebastian Nähring, Carsten Maus, Roland Ewald, Adelinde M. Uhrmacher	Automated transformation between modeling languages with different expressiveness: challenges and results from a use case with SBML and ML-Rules.	WSC	2012	DBLP BibTeX RDF
23	Zhike Zi	SBML-PET-MPI: a parallel parameter estimation tool for Systems Biology Markup Language based models.	Bioinform.	2011	DBLP DOI BibTeX RDF
23	Andreas Dräger, Nicolas Rodriguez 0001, Marine Dumousseau, Alexander Dörr, Clemens Wrzodek, Nicolas Le Novère, Andreas Zell, Michael Hucka	JSBML: a flexible Java library for working with SBML.	Bioinform.	2011	DBLP DOI BibTeX RDF
23	Leo Lahti	A brief overview on the BioPAX and SBML standards for formal presentation of complex biological knowledge	CoRR	2011	DBLP BibTeX RDF
23	Michael Hucka, Frank T. Bergmann, Sarah M. Keating, Lucian P. Smith	A Profile of Today's SBML-Compatible Software.	e-Science Workshops	2011	DBLP DOI BibTeX RDF
23	Allyson L. Lister, Phillip W. Lord, Matthew R. Pocock, Anil Wipat	Annotation of SBML models through rule-based semantic integration.	J. Biomed. Semant.	2010	DBLP BibTeX RDF
23	Yukiko Matsuoka, Samik Ghosh, Norihiro Kikuchi, Hiroaki Kitano	Payao: a community platform for SBML pathway model curation.	Bioinform.	2010	DBLP DOI BibTeX RDF
23	Falko Krause, Jannis Uhlendorf, Timo Lubitz, Marvin Schulz, Edda Klipp, Wolfram Liebermeister	Annotation and merging of SBML models with semanticSBML.	Bioinform.	2010	DBLP DOI BibTeX RDF
23	Thomas Forth, Glenn A. McConkey, David R. Westhead	MetNetMaker: a free and open-source tool for the creation of novel metabolic networks in SBML format.	Bioinform.	2010	DBLP DOI BibTeX RDF
23	Si Yuan Shen, Frank T. Bergmann, Herbert M. Sauro	SBML2TikZ: supporting the SBML render extension in LaTeX.	Bioinform.	2010	DBLP DOI BibTeX RDF
23	Falko Krause, Marvin Schulz, Timo Lubitz, Wolfram Liebermeister	semanticSBML 2.0 - A Collection of Online Services for SBML Models	CoRR	2010	DBLP BibTeX RDF
23	Falko Krause, Marvin Schulz, Timo Lubitz, Wolfram Liebermeister	semanticsSBML 2.0 - A Collection of Online Services for SBML Models.	SWAT4LS	2010	DBLP BibTeX RDF
23	Donglin Huang, Yiling Huang, Christian Klukas, Ralf Hofestädt, Ming Chen 0005	PBSK browser: Navigate biological pathways of PSI-MI, BioPAX, SBML and KGML formats.	BIBM Workshops	2010	DBLP DOI BibTeX RDF
23	Frédéric Y. Bois	GNU MCSim: Bayesian statistical inference for SBML-coded systems biology models.	Bioinform.	2009	DBLP DOI BibTeX RDF
23	Andreas Dräger, Hannes Planatscher, Dieudonné Motsou Wouamba, Adrian Schröder, Michael Hucka, Lukas Endler, Martin Golebiewski, Wolfgang Müller 0001, Andreas Zell	SBML2LATEX: Conversion of SBML files into human-readable reports.	Bioinform.	2009	DBLP DOI BibTeX RDF
23	Neil Swainston, Pedro Mendes 0001	libAnnotationSBML: a library for exploiting SBML annotations.	Bioinform.	2009	DBLP DOI BibTeX RDF
23	Thomas W. Evans, Colin S. Gillespie, Darren J. Wilkinson	The SBML discrete stochastic models test suite.	Bioinform.	2008	DBLP DOI BibTeX RDF
23	Benjamin J. Bornstein, Sarah M. Keating, Akiya Jouraku, Michael Hucka	LibSBML: an API Library for SBML.	Bioinform.	2008	DBLP DOI BibTeX RDF
23	Frank T. Bergmann, Herbert M. Sauro	Comparing simulation results of SBML capable simulators.	Bioinform.	2008	DBLP DOI BibTeX RDF
23	Stephen W. Gilroy, Michael D. Harrison	SBML: a user interface mark-up language based on interaction style.	Int. J. Web Eng. Technol.	2008	DBLP DOI BibTeX RDF
23	Nicolas Rodriguez 0001, Marco Donizelli, Nicolas Le Novère	SBMLeditor: effective creation of models in the Systems Biology Markup Language (SBML).	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
23	Henning Schmidt, Gunnar Drews, Julio Vera, Olaf Wolkenhauer	SBML export interface for the systems biology toolbox for MATLAB.	Bioinform.	2007	DBLP DOI BibTeX RDF
23	Ralph Gauges, Ursula Rost, Sven Sahle, Katja Wegner	A model diagram layout extension for SBML.	Bioinform.	2006	DBLP DOI BibTeX RDF