Search results for "SCOP"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
71	Jianyu Shi, Yan-Ning Zhang	Fast SCOP Classification of Structural Class and Fold Using Secondary Structure Mining in Distance Matrix.	PRIB	2009	DBLP DOI BibTeX RDF	SCOP classification, secondary structure mining, support vector machines, image processing, protein structure, distance matrix
66	Golan Yona, Michael Levitt	A unified sequence-structure classification of protein sequences: combining sequence and structure in a map of the protein space.	RECOMB	2000	DBLP DOI BibTeX RDF
61	Tolga Can, Orhan Çamoglu, Ambuj K. Singh, Yuan-Fang Wang	Automated Protein Classification Using Consensus Decision.	CSB	2004	DBLP DOI BibTeX RDF	decision trees, protein classification, SCOP
60	Keith Marsolo, Srinivasan Parthasarathy 0001, Chris H. Q. Ding	A Multi-Level Approach to SCOP Fold Recognition.	BIBE	2005	DBLP DOI BibTeX RDF
50	Elon Portugaly, Michal Linial	Probabilities for having a new fold on the basis of a map of all protein sequences.	RECOMB	2000	DBLP DOI BibTeX RDF	global protein organization, statistical mode, structural genomics, clustering, structure prediction
44	Niranjan Nagarajan, Golan Yona	A multi-expert system for the automatic detection of protein domains from sequence information.	RECOMB	2003	DBLP DOI BibTeX RDF	domain boundaries, domain prediction, protein domains, SCOP
44	Peng-Liang Wang, Du Zhang	Protein Secondary Structure Prediction with Bayesian Learning Method.	ICTAI	2002	DBLP DOI BibTeX RDF	naïve Bayes classifier, Protein Data Bank, protein secondary structure prediction, SCOP
33	Georgina Mirceva, Andrea Kulakov, Danco Davcev	SGNG Protein Classifier by Matching 3D Structures.	HAIS	2009	DBLP DOI BibTeX RDF
33	Mika Takata, Yasuo Matsuyama	Protein Folding Classification by Committee SVM Array.	ICONIP (2)	2008	DBLP DOI BibTeX RDF
33	Keith Marsolo, Srinivasan Parthasarathy 0001, Kotagiri Ramamohanarao	Structure-based querying of proteins using wavelets.	CIKM	2006	DBLP DOI BibTeX RDF	protein structure similarity, indexing, wavelets
33	Yuheng Li, Mario Lauria, Ralf Bundschuh	Suboptimal Alignments Improve the Detection of Weak Homologs in Sequence Database Searches.	BIBE	2005	DBLP DOI BibTeX RDF	PSI-BLAST, suboptimal alignment, sequence alignment, hybrid algorithm, forward-backward algorithm
33	Akshay Vashist, Casimir A. Kulikowski, Ilya B. Muchnik	Screening for Ortholog Clusters Using Multipartite Graph Clustering by Quasi-Concave Set Function Optimization.	RSFDGrC (2)	2005	DBLP DOI BibTeX RDF
33	Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jack Snoeyink, Jan F. Prins, Alexander Tropsha	Mining protein family specific residue packing patterns from protein structure graphs.	RECOMB	2004	DBLP DOI BibTeX RDF	almost-delaunay, subgraph mining, protein classification
27	Qian Cong, Bong-Hyun Kim, Lisa N. Kinch, Nick V. Grishin	Structural Differences between Proteins with Similar Sequences.	BIBE	2010	DBLP DOI BibTeX RDF	superfamily, evolution, domain, homolog, SCOP
27	Georgina Mirceva, Danco Davcev	HMM Approach for Classifying Protein Structures.	FGIT	2009	DBLP DOI BibTeX RDF	Hidden Markov Model, Protein classification, SCOP
27	Antonina Andreeva, Eugene Kulesha, Julian Gough, Alexey G. Murzin	The SCOP database in 2020: expanded classification of representative family and superfamily domains of known protein structures.	Nucleic Acids Res.	2020	DBLP DOI BibTeX RDF
27	Yehui Tang, Yunhe Wang 0001, Yixing Xu, Dacheng Tao, Chunjing Xu, Chao Xu 0006, Chang Xu 0002	SCOP: Scientific Control for Reliable Neural Network Pruning.	CoRR	2020	DBLP BibTeX RDF
27	Yehui Tang, Yunhe Wang 0001, Yixing Xu, Dacheng Tao, Chunjing Xu, Chao Xu 0006, Chang Xu 0002	SCOP: Scientific Control for Reliable Neural Network Pruning.	NeurIPS	2020	DBLP BibTeX RDF
27	Min Li 0007, Li Tang, Fang-Xiang Wu, Yi Pan 0001, Jianxin Wang 0001	SCOP: a novel scaffolding algorithm based on contig classification and optimization.	Bioinform.	2019	DBLP DOI BibTeX RDF
27	Jad Abbass, Jean-Christophe Nebel	SCOP-Aided Fragment Assembly Protein Structure Prediction.	ACTEA	2019	DBLP DOI BibTeX RDF
27	Patricia Rich	Comparing the axiomatic and ecological approaches to rationality: fundamental agreement theorems in SCOP.	Synth.	2018	DBLP DOI BibTeX RDF
27	Shang Gao 0006, Zhe Peng, Bin Xiao 0001, Qingjun Xiao, Yubo Song	SCoP: Smartphone energy saving by merging push services in Fog computing.	IWQoS	2017	DBLP DOI BibTeX RDF
27	Arumugam Gandhimathi, Pritha Ghosh, Sridhar Hariharaputran, Oommen K. Mathew, Ramanathan Sowdhamini	PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features.	Nucleic Acids Res.	2016	DBLP DOI BibTeX RDF
27	Naomi K. Fox, Steven E. Brenner, John-Marc Chandonia	SCOPe: Structural Classification of Proteins - extended, integrating SCOP and ASTRAL data and classification of new structures.	Nucleic Acids Res.	2014	DBLP DOI BibTeX RDF
27	Maina M. Olembo, Timo Kilian, Simon Stockhardt, Andreas Hülsing, Melanie Volkamer	Developing and testing SCoP - a visual hash scheme.	Inf. Manag. Comput. Secur.	2014	DBLP DOI BibTeX RDF
27	Tony E. Lewis, Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Alison L. Cuff, Jose M. Dana, Ioannis Filippis, Julian Gough, Sarah Hunter, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt, Federico Minneci, Alex L. Mitchell, Alexey G. Murzin, Bernardo Ochoa-Montaño, Owen J. L. Rackham, James Smith 0002, Michael J. E. Sternberg, Sameer Velankar, Corin Yeats, Christine A. Orengo	Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.	Nucleic Acids Res.	2013	DBLP DOI BibTeX RDF
27	Juergen Hahn, Andrew U. Frank	Select the Appropriate Map Depending on Context in a Hilbert Space Model (SCOP).	QI	2013	DBLP DOI BibTeX RDF
27	Ulavappa B. Angadi, M. Venkatesulu	Structural SCOP Superfamily Level Classification Using Unsupervised Machine Learning.	IEEE ACM Trans. Comput. Biol. Bioinform.	2012	DBLP DOI BibTeX RDF
27	Liqing Zhang 0002, Layne T. Watson, Lenwood S. Heath	A Network of SCOP Hidden Markov Models and Its Analysis.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
27	Tobias Hamp, Fabian Birzele, Fabian Buchwald, Stefan Kramer 0001	Improving structure alignment-based prediction of SCOP families using Vorolign Kernels.	Bioinform.	2011	DBLP DOI BibTeX RDF
27	Alberto Casagrande, Francesco Fabris	SCOP family fingerprints: An information theoretic approach to structural classification of protein domains.	BIBM Workshops	2011	DBLP DOI BibTeX RDF
27	Pin-Hao Chi, Bin Pang 0001, Dmitry Korkin, Chi-Ren Shyu	Efficient SCOP-fold classification and retrieval using index-based protein substructure alignments.	Bioinform.	2009	DBLP DOI BibTeX RDF
27	Thomas P. Walsh, Caleb Webber, Stephen M. J. Searle, Shane S. Sturrock, Geoffrey J. Barton	SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser.	Nucleic Acids Res.	2008	DBLP DOI BibTeX RDF
27	Antonina Andreeva, Dave Howorth, John-Marc Chandonia, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin	Data growth and its impact on the SCOP database: new developments.	Nucleic Acids Res.	2008	DBLP DOI BibTeX RDF
27	Marcio Balian, Cedric Luiz de Carvalho	SCOP: a Java Framework for Building Semantic Virtual Communities in the Web.	WONTO	2008	DBLP BibTeX RDF
27	Chi-Hua Tung, Jinn-Moon Yang	fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies.	Nucleic Acids Res.	2007	DBLP DOI BibTeX RDF
27	Alessandro Pandini, Laura Bonati, Franca Fraternali, Jens Kleinjung	MinSet: a general approach to derive maximally representative database subsets by using fragment dictionaries and its application to the SCOP database.	Bioinform.	2007	DBLP DOI BibTeX RDF
27	Stefan J. Suhrer, Markus Wiederstein, Manfred J. Sippl	QSCOP - SCOP quantified by structural relationships.	Bioinform.	2007	DBLP DOI BibTeX RDF
27	Jan E. Gewehr, Volker Hintermair, Ralf Zimmer	AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings.	Bioinform.	2007	DBLP DOI BibTeX RDF
27	James A. Casbon, Gavin E. Crooks, Mansoor A. S. Saqi	A high level interface to SCOP and ASTRAL implemented in Python.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
27	Pin-Hao Chi, Chi-Ren Shyu, Dong Xu 0002	A fast SCOP fold classification system using content-based E-Predict algorithm.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
27	Pin-Hao Chi, Chi-Ren Shyu	Predicting Ranked SCOP Domains by Mining Associations of Visual Contents in Distance Matrices.	APBC	2006	DBLP BibTeX RDF
27	James A. Casbon, Mansoor A. S. Saqi	S4: structure-based sequence alignments of SCOP superfamilies.	Nucleic Acids Res.	2005	DBLP DOI BibTeX RDF
27	Antonina Andreeva, Dave Howorth, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin	SCOP database in 2004: refinements integrate structure and sequence family data.	Nucleic Acids Res.	2004	DBLP DOI BibTeX RDF
27	Gad Getz, Alina Starovolsky, Eytan Domany	F2CS: FSSP to CATH and SCOP prediction server.	Bioinform.	2004	DBLP DOI BibTeX RDF
27	Susana Vinga, Rodrigo Gouveia-Oliveira, Jonas S. Almeida	Comparative evaluation of word composition distances for the recognition of SCOP relationships.	Bioinform.	2004	DBLP DOI BibTeX RDF
27	Aik Choon Tan, David R. Gilbert, Yves Deville	Integrative machine learning approach for multi-class SCOP protein fold classification.	German Conference on Bioinformatics	2003	DBLP BibTeX RDF
27	Julian Gough, Cyrus Chothia	SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments.	Nucleic Acids Res.	2002	DBLP DOI BibTeX RDF
27	Loredana Lo Conte, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin	SCOP database in 2002: refinements accommodate structural genomics.	Nucleic Acids Res.	2002	DBLP DOI BibTeX RDF
27	Loredana Lo Conte, Bart Ailey, Tim J. P. Hubbard, Steven E. Brenner, Alexey G. Murzin, Cyrus Chothia	SCOP: a Structural Classification of Proteins database.	Nucleic Acids Res.	2000	DBLP DOI BibTeX RDF
27	Tim J. P. Hubbard, Bart Ailey, Steven E. Brenner, Alexey G. Murzin, Cyrus Chothia	SCOP: a Structural Classification of Proteins database.	Nucleic Acids Res.	1999	DBLP DOI BibTeX RDF
27	Tim J. P. Hubbard, Alexey G. Murzin, Steven E. Brenner, Cyrus Chothia	SCOP: a structural classification of proteins database.	Nucleic Acids Res.	1997	DBLP DOI BibTeX RDF
27	Inna Dubchak, Ilya B. Muchnik, Sung-Hou Kim	Protein Folding Class Predictor for SCOP: Approach Based on Global Descriptors.	ISMB	1997	DBLP BibTeX RDF
17	Christian Flender, Kirsty Kitto, Peter Bruza	Beyond Ontology in Information Systems.	QI	2009	DBLP DOI BibTeX RDF
17	Bin Liu 0014, Lei Lin 0001, Xiaolong Wang 0001, Qiwen Dong, Xuan Wang 0002	A Discriminative Method for Protein Remote Homology Detection Based on N-nary Profiles.	BIRD	2008	DBLP DOI BibTeX RDF	remote homology, N-nary profiles, chi-square algorithm, latent semantic analysis
17	Rumen Andonov, Nicola Yanev, Noël Malod-Dognin	An Efficient Lagrangian Relaxation for the Contact Map Overlap Problem.	WABI	2008	DBLP DOI BibTeX RDF	Protein structure alignment, contact map overlap, combinatorial optimization, integer programming, branch and bound, Lagrangian relaxation
17	Yuehui Chen, Xueqin Zhang, Mary Qu Yang, Jack Y. Yang	Ensemble of Probabilistic Neural Networks for Protein Fold Recognition.	BIBE	2007	DBLP DOI BibTeX RDF
17	Marenglen Biba, Floriana Esposito, Stefano Ferilli, Teresa Maria Altomare Basile, Nicola Di Mauro	Multi-class Protein Fold Recognition Through a Symbolic-Statistical Framework.	WILF	2007	DBLP DOI BibTeX RDF
17	Qiwen Dong, Lei Lin 0001, Xiaolong Wang 0001	Protein Remote Homology Detection Based on Binary Profiles.	BIRD	2007	DBLP DOI BibTeX RDF	remote homology detection, binary profile, latent semantic analysis
17	Yao-Lin Chang, Huai-Kuang Tsai, Cheng-Yan Kao, Yung-Chiang Chen, Jinn-Moon Yang	Evolutionary Conservation of DNA-Contact residues in DNA-binding Domains.	IMSCCS	2007	DBLP DOI BibTeX RDF
17	Evgeni Tsivtsivadze, Jorma Boberg, Tapio Salakoski	Locality Kernels for Protein Classification.	WABI	2007	DBLP DOI BibTeX RDF
17	Degui Zhi, Maxim Shatsky, Steven E. Brenner	Alignment-Free Local Structural Search by Writhe Decomposition.	WABI	2007	DBLP DOI BibTeX RDF
17	Sourangshu Bhattacharya, Chiranjib Bhattacharyya, Nagasuma R. Chandra	Structural alignment based kernels for protein structure classification.	ICML	2007	DBLP DOI BibTeX RDF
17	Zhuo Wang, Xin-Guang Zhu, Yazhu Chen, Yi-Xue Li, Lei Liu	Comparison of Modularization Methods in Application to Different Biological Networks.	VDMB	2006	DBLP DOI BibTeX RDF	Markov clustering (MCL), network, simulated annealing (SA), module
17	Wei Xie, Nikolaos V. Sahinidis	A Branch-and-Reduce Algorithm for the Contact Map Overlap Problem.	RECOMB	2006	DBLP DOI BibTeX RDF
17	Mark Grechanik, Dewayne E. Perry, Don S. Batory	A Security Mechanism for Component-Based Systems.	ICCBSS	2006	DBLP DOI BibTeX RDF
17	Jeanette Tångrot, Lixiao Wang, Bo Kågström, Uwe H. Sauer	Design, Construction and Use of the FISH Server.	PARA	2006	DBLP DOI BibTeX RDF
17	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001	Integration of Protein Data Sources Through PO.	DEXA	2006	DBLP DOI BibTeX RDF
17	Keith Marsolo, Srinivasan Parthasarathy 0001	Alternate Representation of Distance Matrices for Characterization of Protein Structure.	ICDM	2005	DBLP DOI BibTeX RDF
17	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001	Ontological Foundation for Protein Data Models.	OTM Workshops	2005	DBLP DOI BibTeX RDF
17	Feng Gao 0016, Mohammed Javeed Zaki	PSIST: Indexing Protein Structures Using Suffix Trees.	CSB	2005	DBLP DOI BibTeX RDF
17	Keren Lasker, Oranit Dror, Ruth Nussinov, Haim J. Wolfson	Discovery of Protein Substructures in EM Maps.	WABI	2005	DBLP DOI BibTeX RDF	intermediate resolution cryo EM maps, 3D alignment of secondary structures, macromolecular assemblies, Structural bioinformatics
17	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001, Baldev S. Sidhu	OWL, Proteins and Data Integration.	Australian Conference on Artificial Intelligence	2005	DBLP DOI BibTeX RDF	Information Retrieval, Knowledge Representation, Data Integration, Biomedical Ontologies, Protein Ontology
17	Matthew Menke, Eben Scanlon, Jonathan King, Bonnie Berger, Lenore Cowen	Wrap-and-pack: a new paradigm for beta structural motif recognition with application to recognizing beta trefoils.	RECOMB	2004	DBLP DOI BibTeX RDF	beta structures, beta trefoils, motif recognition, rotamer libraries, threading, protein structure prediction
17	Anand Kumar 0005, Barry Smith 0001	Towards a Proteomics Meta-Classification.	BIBE	2004	DBLP DOI BibTeX RDF
17	Jérôme Mikolajczak, Gérard Ramstein, Yannick Jacques	SVM-Based Classification of Distant Proteins Using Hierarchical Motifs.	IDEAL	2004	DBLP DOI BibTeX RDF
17	Rui Kuang, Eugene Ie, Ke Wang, Kai Wang, Mahira Siddiqi, Yoav Freund, Christina S. Leslie	Profile-Based String Kernels for Remote Homology Detection and Motif Extraction.	CSB	2004	DBLP DOI BibTeX RDF	protein motifs, support vector machine, kernels, protein classification
17	Kyungsook Han, Byungkyu Park	A Database Server for Predicting Protein-Protein Interactions.	International Conference on Computational Science	2004	DBLP DOI BibTeX RDF
17	Andriy Kryshtafovych, Torgeir R. Hvidsten, Henryk Jan Komorowski, Krzysztof Fidelis	Fold Recognition Using Sequence Fingerprints of Protein Local Substructures.	CSB	2003	DBLP DOI BibTeX RDF
17	Christina S. Leslie, Rui Kuang	Fast Kernels for Inexact String Matching.	COLT	2003	DBLP DOI BibTeX RDF	Kernel methods, computational biology, string kernels
17	Nikhil R. Pal, Debrup Chakraborty	Some New Features for Protein Fold Prediction.	ICANN	2003	DBLP DOI BibTeX RDF
17	Li Liao, William Stafford Noble	Combining pairwise sequence similarity and support vector machines for remote protein homology detection.	RECOMB	2002	DBLP DOI BibTeX RDF
17	Guoying Liu, Ann E. Loraine, Ron Shigeta, Melissa S. Cline, Jill Cheng, Stephen A. Chervitz, David Kulp, Michael A. Siani-Rose	NetAffx: affymetrix probeset annotations.	SAC	2002	DBLP DOI BibTeX RDF	GRAPA, GeneChip, netaffx, microarray, protein domains
17	Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson	MultiProt - A Multiple Protein Structural Alignment Algorithm.	WABI	2002	DBLP DOI BibTeX RDF
17	Phil Bradley, Lenore Cowen, Matthew Menke, Jonathan King, Bonnie Berger	Predicting the beta-helix fold from protein sequence data.	RECOMB	2001	DBLP DOI BibTeX RDF
17	Giuseppe Lancia, Robert D. Carr, Brian Walenz, Sorin Istrail	101 optimal PDB structure alignments: a branch-and-cut algorithm for the maximum contact map overlap problem.	RECOMB	2001	DBLP DOI BibTeX RDF
17	Silvano Chiaradonna, Andrea Bondavalli, Lorenzo Strigini	On Performability Modeling and Evaluation of Software Fault Tolerant Structures.	EDCC	1994	DBLP DOI BibTeX RDF
17	Ming-Yun Horng, Leonard Kleinrock	Fault-tolerant routing with regularity restoration in Boolean n -cube interconnection networks.	SPDP	1991	DBLP DOI BibTeX RDF