Search results for "Side-chain"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
81	Jinbo Xu, Bonnie Berger	Fast and accurate algorithms for protein side-chain packing.	J. ACM	2006	DBLP DOI BibTeX RDF	Protein side-chain packing, approximate algorithm, polynomial-time approximation scheme, tree decomposition
73	Jing Zhang 0012, Xin Gao 0001, Jinbo Xu, Ming Li 0001	Rapid and Accurate Protein Side Chain Prediction with Local Backbone Information.	RECOMB	2008	DBLP DOI BibTeX RDF	side chain prediction, local backbone features, multiclass Support Vector Machines
65	Guojun Li, Zhijie Liu, Jun-tao Guo, Ying Xu 0001	An Algorithm for Simultaneous Backbone Threading and Side-Chain Packing.	Algorithmica	2008	DBLP DOI BibTeX RDF	Side-chain, Algorithm, Protein threading, Backbone
64	Martin T. Swain, Graham J. L. Kemp	A CLP Approach to the Protein Side-Chain Placement Problem.	CP	2001	DBLP DOI BibTeX RDF
62	Adam Liwo, Jaroslaw Pillardy, Cezary Czaplewski, Jooyoung Lee 0002, Daniel R. Ripoll, Malgorzata Groth, Sylwia Rodziewicz-Motowidlo, Rajmund Kazmierkiewicz, Ryszard J. Wawak, Stanislaw Oldziej, Harold A. Scheraga	UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody terms.	RECOMB	2000	DBLP DOI BibTeX RDF
54	Jiyuan An, Yi-Ping Phoebe Chen	A Similarity Search Algorithm to Predict Protein Structures.	KES (2)	2006	DBLP DOI BibTeX RDF
54	Peng Zhou 0003, Xiang Chen, Zhicai Shang	Side-chain conformational space analysis (SCSA): A multi conformation-based QSAR approach for modeling and prediction of protein-peptide binding affinities.	J. Comput. Aided Mol. Des.	2009	DBLP DOI BibTeX RDF	Multi-conformation-based quantitative structure-activity relationship, Side-chain conformational space analysis, Rotamer library, Self-consistent mean field theory, Protein-peptide complex, HLA-A*0201-restricted CTL epitope
44	Guojun Li, Zhijie Liu, Jun-tao Guo, Ying Xu 0001	An Algorithm for Simultaneous Backbone Threading and Side-Chain Packing.	Algorithmica	2007	DBLP DOI BibTeX RDF
44	Jinbo Xu	Rapid Protein Side-Chain Packing via Tree Decomposition.	RECOMB	2005	DBLP DOI BibTeX RDF
44	Jan A. Spriet	Side-Chain Structure Prediction Based on Dead-End Elimination: Single Split DEE-criterion Implementation and Elimination Power.	WABI	2003	DBLP DOI BibTeX RDF
42	Ket Fah Chong, Hon Wai Leong	An extension of dead end elimination for protein side-chain conformation using merge-decoupling.	SAC	2006	DBLP DOI BibTeX RDF	protein side chain conformation, algorithm
37	Roberto Santana 0001, Pedro Larrañaga, José Antonio Lozano 0001	Adding Probabilistic Dependencies to the Search of Protein Side Chain Configurations Using EDAs.	PPSN	2008	DBLP DOI BibTeX RDF	probabilistic models, estimation of distribution algorithm, protein structure prediction
37	Chen Yanover, Ora Schueler-Furman, Yair Weiss	Minimizing and Learning Energy Functions for Side-Chain Prediction.	RECOMB	2007	DBLP DOI BibTeX RDF
34	Roberto Santana 0001, Pedro Larrañaga, José Antonio Lozano 0001	Combining variable neighborhood search and estimation of distribution algorithms in the protein side chain placement problem.	J. Heuristics	2008	DBLP DOI BibTeX RDF	Rotamers, Protein side chain placement, EDAs, Protein folding, VNS, UMDA
34	Miguel M. F. Bugalho, Arlindo L. Oliveira	An Evaluation of the Impact of Side Chain Positioning on the Accuracy of Discrete Models of Protein Structures.	BSB	2008	DBLP DOI BibTeX RDF	Protein models, discrete state models, side chain positioning, protein folding
33	Olivia Eriksson, Yishao Zhou, Arne Elofsson	Side Chain-Positioning as an Integer Programming Problem.	WABI	2001	DBLP DOI BibTeX RDF
31	Ernst Althaus, Oliver Kohlbacher, Hans-Peter Lenhof, Peter Müller 0008	A combinatorial approach to protein docking with flexible side-chains.	RECOMB	2000	DBLP DOI BibTeX RDF
29	Volker Heun	Approximate Protein Folding in the HP Side Chain Model on Extended Cubic Lattices.	ESA	1999	DBLP DOI BibTeX RDF
27	Urszula Kozlowska, Gia G. Maisuradze, Adam Liwo, Harold A. Scheraga	Determination of side-chain-rotamer and side-chain and backbone virtual-bond-stretching potentials of mean force from AM1 energy surfaces of terminally-blocked amino-acid residues, for coarse-grained simulations of protein structure and folding. II. Results, comparison with statistical potentials, and implementation in the UNRES force field.	J. Comput. Chem.	2010	DBLP DOI BibTeX RDF
27	Urszula Kozlowska, Adam Liwo, Harold A. Scheraga	Determination of side-chain-rotamer and side-chain and backbone virtual-bond-stretching potentials of mean force from AM1 energy surfaces of terminally-blocked amino-acid residues, for coarse-grained simulations of protein structure and folding. I. The method.	J. Comput. Chem.	2010	DBLP DOI BibTeX RDF
27	R. Gautier, Pierre Tufféry	Critical assessment of side-chain conformational space sampling procedures designed for quantifying the effect of side-chain environment.	J. Comput. Chem.	2003	DBLP DOI BibTeX RDF
27	Xiang-Yuan Li, Ji-Feng Liu	A theoretical study of solvent effect and reaction mechanism of electron transfer reaction between indole side chain and phenol side chain of peptide involving tryptophan and tyrosine.	J. Comput. Chem.	2001	DBLP DOI BibTeX RDF
25	Bin Fu, Zhixiang Chen 0001	Sublinear time width-bounded separators and their application to the protein side-chain packing problem.	J. Comb. Optim.	2008	DBLP DOI BibTeX RDF	Width-bounded separator, Random sampling, Sublinear time algorithm
25	Bin Fu, Zhixiang Chen 0001	Sublinear Time Width-Bounded Separators and Their Application to the Protein Side-Chain Packing Problem.	AAIM	2006	DBLP DOI BibTeX RDF
23	Charles L. Brooks III	De novo modeling of GPCR class A structures.	IPDPS	2009	DBLP DOI BibTeX RDF
20	Claudia Llinas del Torrent, Iu Raïch, Angel Gonzalez, Nil Casajuana-Martin, Jaume Lillo, Joan Biel Rebassa, Carlos Ferreiro-Vera, Verónica Sánchez de Medina, Rafael Franco, Gemma Navarro, Leonardo Pardo	The Leu/Val6.51 Side Chain of Cannabinoid Receptors Regulates the Binding Mode of the Alkyl Chain of Δ9-Tetrahydrocannabinol.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
20	Christian Bartels, Martin Karplus	Multidimensional adaptive umbrella sampling: Applications to main chain and side chain peptide conformations.	J. Comput. Chem.	1997	DBLP DOI BibTeX RDF
19	Kyungsook Han, Chirag Nepal	Mining Molecular Structure Data for the Patterns of Interactions Between Protein and RNA.	International Conference on Computational Science (1)	2007	DBLP DOI BibTeX RDF
14	Suvankar Ghosh, Sunanda Chatterjee, Priyadarshi Satpati	Effect of Spacer Length Modification of the Cationic Side Chain on the Energetics of Antimicrobial Peptide Binding to Membrane-Mimetic Bilayers.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
14	Matthew R. Masters, Amr H. Mahmoud, Yao Wei, Markus A. Lill	Deep Learning Model for Efficient Protein-Ligand Docking with Implicit Side-Chain Flexibility.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
14	Tareq Hameduh, Michal Mokry, Andrew D. Miller 0003, Zbynek Heger, Yazan Haddad	Solvent Accessibility Promotes Rotamer Errors during Protein Modeling with Major Side-Chain Prediction Programs.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
14	Junyu Yan, Shuai Li 0001, Ying Zhang, Aimin Hao, Qinping Zhao	ZetaDesign: an end-to-end deep learning method for protein sequence design and side-chain packing.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
14	Gian Marco Visani, William Galvin, Michael Neal Pun, Armita Nourmohammad	H-Packer: Holographic Rotationally Equivariant Convolutional Neural Network for Protein Side-Chain Packing.	CoRR	2023	DBLP DOI BibTeX RDF
14	Shiwei Liu, Tian Zhu, Milong Ren, Chungong Yu, Dongbo Bu, Haicang Zhang	Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model.	CoRR	2023	DBLP DOI BibTeX RDF
14	Yangtian Zhang, Zuobai Zhang, Bozitao Zhong, Sanchit Misra, Jian Tang 0005	DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing.	CoRR	2023	DBLP DOI BibTeX RDF
14	Gian Marco Visani, William Galvin, Michael N. Pun, Armita Nourmohammad	H-Packer: Holographic Rotationally Equivariant Convolutional Neural Network for Protein Side-Chain Packing.	MLCB	2023	DBLP BibTeX RDF
14	Deqin Liu, Sheng Chen, Shuangjia Zheng, Sen Zhang, Yuedong Yang	SE(3) Equivalent Graph Attention Network as an Energy-Based Model for Protein Side Chain Conformation.	BIBM	2023	DBLP DOI BibTeX RDF
14	Shiwei Liu, Tian Zhu, Milong Ren, Chungong Yu, Dongbo Bu, Haicang Zhang	Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model.	NeurIPS	2023	DBLP BibTeX RDF
14	Yangtian Zhang, Zuobai Zhang, Bozitao Zhong, Sanchit Misra, Jian Tang 0005	DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing.	NeurIPS	2023	DBLP BibTeX RDF
14	Jiujun Cheng, Guowang Xu, Guiyuan Yuan, Lu Yang, Zhenhua Huang 0001, Chenxi Huang 0001, Victor Hugo C. de Albuquerque	A Side Chain Consensus-Based Decentralized Autonomous Vehicle Group Formation and Maintenance Method in a Highway Scene.	IEEE Trans. Ind. Informatics	2022	DBLP DOI BibTeX RDF
14	Gang Xu, Yilin Wang, Qinghua Wang, Jianpeng Ma	Studying protein-protein interaction through side-chain modeling method OPUS-Mut.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
14	Gang Xu, Qinghua Wang, Jianpeng Ma	Expression of Concern to: OPUS-Rota4: a gradient-based protein side-chain modeling framework assisted by deep learning-based predictors.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
14	Gang Xu, Qinghua Wang, Jianpeng Ma	OPUS-Rota4: a gradient-based protein side-chain modeling framework assisted by deep learning-based predictors.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
14	Gang Xu, Qinghua Wang, Jianpeng Ma	Corrigendum to 'OPUS-Rota4: a gradient-based protein side-chain modeling framework assisted by deep learning-based predictors'.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
14	Chandrajit Bajaj, Conrad Li, Minh Nguyen	Solving the Side-Chain Packing Arrangement of Proteins from Reinforcement Learned Stochastic Decision Making.	CoRR	2022	DBLP DOI BibTeX RDF
14	Jesús San Fabián, Ignacio Ema, Salama Omar, José Manuel García de la Vega	Toward a Computational NMR Procedure for Modeling Dipeptide Side-Chain Conformation.	J. Chem. Inf. Model.	2021	DBLP DOI BibTeX RDF
14	Yujin Wu, Charles L. Brooks III	Flexible CDOCKER: Hybrid Searching Algorithm and Scoring Function with Side Chain Conformational Entropy.	J. Chem. Inf. Model.	2021	DBLP DOI BibTeX RDF
14	Jesús San Fabián, Salama Omar, José Manuel García de la Vega	Computational approaches to amino acid side-chain conformation using combined NMR theoretical and experimental results: leucine-67 in Desulfovibrio vulgaris flavodoxin.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
14	Ioannis Stylianakis, Ariella Shalev, Steve Scheiner, Michael P. Sigalas, Isaiah T. Arkin, Nicholas M. Glykos, Antonios Kolocouris	The balance between side-chain and backbone-driven association in folding of the α-helical influenza A transmembrane peptide.	J. Comput. Chem.	2020	DBLP DOI BibTeX RDF
14	Matthew P. Baumgartner, David A. Evans 0002	Side chain virtual screening of matched molecular pairs: a PDB-wide and ChEMBL-wide analysis.	J. Comput. Aided Mol. Des.	2020	DBLP DOI BibTeX RDF
14	Gang Xu, Qinghua Wang, Jianpeng Ma	OPUS-Rota3: Improving Protein Side-Chain Modeling by Deep Neural Networks and Ensemble Methods.	J. Chem. Inf. Model.	2020	DBLP DOI BibTeX RDF
14	Xiaoqiang Huang, Robin Pearce, Yang Zhang 0040	Toward the Accuracy and Speed of Protein Side-Chain Packing: A Systematic Study on Rotamer Libraries.	J. Chem. Inf. Model.	2020	DBLP DOI BibTeX RDF
14	Xiaoqiang Huang, Robin Pearce, Yang Zhang 0040	FASPR: an open-source tool for fast and accurate protein side-chain packing.	Bioinform.	2020	DBLP DOI BibTeX RDF
14	Hongkai Wang, Yiyang Yao, Xiaohui Wang, Xiaoyi Wang, Lei Zeng, Weiwei Qiu, Dong He, Qiang Wang	A Green Power Traceability Technology Based on Timestamp in a Main-Side Chain System.	CISP-BMEI	2020	DBLP DOI BibTeX RDF
14	Sara Del Galdo, Giordano Mancini, Isabella Daidone, Laura Zanetti Polzi, Andrea Amadei, Vincenzo Barone	Tyrosine absorption spectroscopy: Backbone protonation effects on the side chain electronic properties.	J. Comput. Chem.	2018	DBLP DOI BibTeX RDF
14	Taras Dauzhenka, Petras J. Kundrotas, Ilya A. Vakser	Computational Feasibility of an Exhaustive Search of Side-Chain Conformations in Protein-Protein Docking.	J. Comput. Chem.	2018	DBLP DOI BibTeX RDF
14	Huanyu Chu, Haiyan Liu	TetraBASE: A Side Chain-Independent Statistical Energy for Designing Realistically Packed Protein Backbones.	J. Chem. Inf. Model.	2018	DBLP DOI BibTeX RDF
14	José D. Colbes, Sergio A. Aguila, Carlos A. Brizuela	Scoring of Side-Chain Packings: An Analysis of Weight Factors and Molecular Dynamics Structures.	J. Chem. Inf. Model.	2018	DBLP DOI BibTeX RDF
14	John M. Jumper, Nabil F. Faruk, Karl F. Freed, Tobin R. Sosnick	Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics.	PLoS Comput. Biol.	2018	DBLP DOI BibTeX RDF
14	Guido Falk von Rudorff, Tobias Watermann, Xiangyang Guo, Daniel Sebastiani	Conformational Space of a Polyphilic Molecule with a Fluorophilic Side Chain Integrated in a DPPC Bilayer.	J. Comput. Chem.	2017	DBLP DOI BibTeX RDF
14	José D. Colbes, Rosario I. Corona, Christian Lezcano, David O. Rodríguez, Carlos A. Brizuela	Protein side-chain packing problem: is there still room for improvement?	Briefings Bioinform.	2017	DBLP DOI BibTeX RDF
14	Ke Liu, Xiangyan Sun, Jun Ma, Zhenyu Zhou, Qilin Dong, Shengwen Peng, Junqiu Wu, Suocheng Tan, Günter Blobel, Jie Fan 0006	Prediction of amino acid side chain conformation using a deep neural network.	CoRR	2017	DBLP BibTeX RDF
14	Alexey V. Rossokhin, Boris S. Zhorov	Side chain flexibility and the pore dimensions in the GABAA receptor.	J. Comput. Aided Mol. Des.	2016	DBLP DOI BibTeX RDF
14	Joonghyun Ryu, Mokwon Lee, Jehyun Cha, Roman A. Laskowski, Seong Eon Ryu, Deok-Soo Kim	BetaSCPWeb: side-chain prediction for protein structures using Voronoi diagrams and geometry prioritization.	Nucleic Acids Res.	2016	DBLP DOI BibTeX RDF
14	Xin Geng, Jiaogen Zhou, Jihong Guan	Side-chain dynamics analysis of KE07 series.	Comput. Biol. Chem.	2016	DBLP DOI BibTeX RDF
14	Luiz Fernando Nunes, Lauro Cesar Galvão, Heitor Silvério Lopes, Pablo Moscato, Regina Berretta	An integer programming model for protein structure prediction using the 3D-HP side chain model.	Discret. Appl. Math.	2016	DBLP DOI BibTeX RDF
14	Nicholas E. Newell	Mapping side chain interactions at protein helix termini.	BMC Bioinform.	2015	DBLP DOI BibTeX RDF
14	Mohammad Moghadasi, Hanieh Mirzaei, Artem B. Mamonov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis, Dima Kozakov	The Impact of Side-Chain Packing on Protein Docking Refinement.	J. Chem. Inf. Model.	2015	DBLP DOI BibTeX RDF
14	Noah Ollikainen, René M. de Jong, Tanja Kortemme	Coupling Protein Side-Chain and Backbone Flexibility Improves the Re-design of Protein-Ligand Specificity.	PLoS Comput. Biol.	2015	DBLP DOI BibTeX RDF
14	Hui Liu, Feng Lin 0002, Jianli Yang, Xiu-Ling Liu	Side-chain flexibility in protein docking.	CIBCB	2015	DBLP DOI BibTeX RDF
14	Mohammad Moghadasi	Optimization methods for side-chain positioning and macromolecular docking		2015	RDF
14	Katja Ostermeir, Martin Zacharias	Hamiltonian replica-exchange simulations with adaptive biasing of peptide backbone and side chain dihedral angles.	J. Comput. Chem.	2014	DBLP DOI BibTeX RDF
14	Laleh Soltan Ghoraie, Forbes J. Burkowski, Shuai Cheng Li 0001, Mu Zhu	Residue-Specific Side-Chain Polymorphismsvia Particle Belief Propagation.	IEEE ACM Trans. Comput. Biol. Bioinform.	2014	DBLP DOI BibTeX RDF
14	Marcel Schumann, Roger S. Armen	Systematic and efficient side chain optimization for molecular docking using a cheapest-path procedure.	J. Comput. Chem.	2013	DBLP DOI BibTeX RDF
14	Jihyun Shim, Xiao Zhu, Robert B. Best, Alexander D. MacKerell Jr.	(Ala)4-X-(Ala)4 as a model system for the optimization of the χ1 and χ2 amino acid side-chain dihedral empirical force field parameters.	J. Comput. Chem.	2013	DBLP DOI BibTeX RDF
14	Zhixiong Lin, Wilfred F. van Gunsteren	Influence of variation of a side chain on the folding equilibrium of a β-peptide: Limitations of one-step perturbation.	J. Comput. Chem.	2013	DBLP DOI BibTeX RDF
14	Xinbi Li, Sergei Y. Ponomarev, Qina Sa, Daniel L. Sigalovsky, George A. Kaminski	Polarizable simulations with second order interaction model (POSSIM) force field: Developing parameters for protein side-chain analogues.	J. Comput. Chem.	2013	DBLP DOI BibTeX RDF
14	Hajira Ahmed Hotiana, Muhammad K. Haider	Structural Modeling of HCV NS3/4A Serine Protease Drug-Resistance Mutations Using End-Point Continuum Solvation and Side-Chain Flexibility Calculations.	J. Chem. Inf. Model.	2013	DBLP DOI BibTeX RDF
14	Lim Heo, Hahnbeom Park, Chaok Seok	GalaxyRefine: protein structure refinement driven by side-chain repacking.	Nucleic Acids Res.	2013	DBLP DOI BibTeX RDF
14	Nurul Nadzirin, Peter Willett 0002, Peter J. Artymiuk, Mohd Firdaus Raih	IMAAAGINE: a webserver for searching hypothetical 3D amino acid side chain arrangements in the Protein Data Bank.	Nucleic Acids Res.	2013	DBLP DOI BibTeX RDF
14	Joonghyun Ryu, Deok-Soo Kim	Protein structure optimization by side-chain positioning via beta-complex.	J. Glob. Optim.	2013	DBLP DOI BibTeX RDF
14	Mohammad Moghadasi, Dima Kozakov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis	A new distributed algorithm for side-chain positioning in the process of protein docking.	CDC	2013	DBLP DOI BibTeX RDF
14	Azlan Iqbal	Switch-side chain-chess.	CGAMES	2013	DBLP DOI BibTeX RDF
14	Shuai Cheng Li 0001, Dongbo Bu, Ming Li 0001	Residues with Similar Hexagon Neighborhoods Share Similar Side-Chain Conformations.	IEEE ACM Trans. Comput. Biol. Bioinform.	2012	DBLP DOI BibTeX RDF
14	Nurul Nadzirin, Eleanor J. Gardiner, Peter Willett 0002, Peter J. Artymiuk, Mohd Firdaus Raih	SPRITE and ASSAM: web servers for side chain 3D-motif searching in protein structures.	Nucleic Acids Res.	2012	DBLP DOI BibTeX RDF
14	Francis Gaudreault, Matthieu Chartier, Rafael Najmanovich	Side-chain rotamer changes upon ligand binding: common, crucial, correlate with entropy and rearrange hydrogen bonding.	Bioinform.	2012	DBLP DOI BibTeX RDF
14	Mohammad Moghadasi, Dima Kozakov, Artem B. Mamonov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis	A message passing approach to Side Chain Positioning with applications in protein docking refinement.	CDC	2012	DBLP DOI BibTeX RDF
14	Lauro Cesar Galvão, Luiz Fernando Nunes, Heitor Silvério Lopes, Pablo Moscato	A new greedy heuristic for 3DHP protein struture prediction with side chain.	BIBM Workshops	2012	DBLP DOI BibTeX RDF
14	Zheng-Wang Qu, Hui Zhu 0009, Volkhard May	Vibrational spectral signatures of peptide secondary structures: N-methylation and side chain hydrogen bond in cyclosporin A.	J. Comput. Chem.	2011	DBLP DOI BibTeX RDF
14	Shide Liang, Yaoqi Zhou, Nick V. Grishin, Daron M. Standley	Protein side chain modeling with orientation-dependent atomic force fields derived by series expansions.	J. Comput. Chem.	2011	DBLP DOI BibTeX RDF
14	Bin Lin, B. Montgomery Pettitt	Electrostatic solvation free energy of amino acid side chain analogs: Implications for the validity of electrostatic linear response in water.	J. Comput. Chem.	2011	DBLP DOI BibTeX RDF
14	Pascal Comte, Sergei Vassiliev, Sheridan K. Houghten, Doug Bruce	Genetic algorithm with alternating selection pressure for protein side-chain packing and pK(a) prediction.	Biosyst.	2011	DBLP DOI BibTeX RDF
14	Md Shariful Bhuyan, Xin Gao 0001	A protein-dependent side-chain rotamer library.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
14	Stefan Canzar, Nora C. Toussaint, Gunnar W. Klau	An exact algorithm for side-chain placement in protein design.	Optim. Lett.	2011	DBLP DOI BibTeX RDF
14	Zhichao Miao, Yang Cao, Taijiao Jiang	RASP: rapid modeling of protein side chain conformations.	Bioinform.	2011	DBLP DOI BibTeX RDF
14	Yang Cao, Lin Song, Zhichao Miao, Yun Hu, Liqing Tian, Taijiao Jiang	Improved side-chain modeling by coupling clash-detection guided iterative search with rotamer relaxation.	Bioinform.	2011	DBLP DOI BibTeX RDF
14	Shide Liang, Dandan Zheng, Chi Zhang 0013, Daron M. Standley	Fast and accurate prediction of protein side-chain conformations.	Bioinform.	2011	DBLP DOI BibTeX RDF
14	Stefan Canzar, Nora C. Toussaint, Gunnar W. Klau	An Exact Algorithm for Side-Chain Placement in Protein Design	CoRR	2011	DBLP BibTeX RDF
14	Kateri H. DuBay, Jacques P. Bothma, Phillip L. Geissler	Long-Range Intra-Protein Communication Can Be Transmitted by Correlated Side-Chain Fluctuations Alone.	PLoS Comput. Biol.	2011	DBLP DOI BibTeX RDF
14	Jianyang Zeng 0001, Kyle E. Roberts, Pei Zhou 0001, Bruce Randall Donald	A Bayesian Approach for Determining Protein Side-Chain Rotamer Conformations Using Unassigned NOE Data.	J. Comput. Biol.	2011	DBLP DOI BibTeX RDF