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Publication years (Num. hits)
1993-2003 (19) 2004-2006 (32) 2007-2008 (27) 2009-2010 (27) 2011-2013 (20) 2014-2016 (19) 2017-2018 (19) 2019-2022 (15) 2023 (4)
Publication types (Num. hits)
article(45) inproceedings(137)
Venues (Conferences, Journals, ...)
IPDPS(9) FPL(7) BMC Bioinform.(6) FPGA(6) CoRR(5) BIBE(4) CLUSTER(4) Int. J. Parallel Program.(4) RECOMB(4) ASAP(3) Bioinform.(3) CSB(3) IPDPS Workshops(3) IWBBIO (2)(3) WABI(3) CIBCB(2) More (+10 of total 117)
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Found 182 publication records. Showing 182 according to the selection in the facets
Hits ? Authors Title Venue Year Link Author keywords
117Xiandong Meng, Vipin Chaudhary Bio-sequence analysis with cradle's 3SoCTM software scalable system on chip. Search on Bibsonomy SAC The full citation details ... 2004 DBLP  DOI  BibTeX  RDF 3SoC chip, Digital Signal Processors, Smith-Waterman algorithm
112Jeffrey Allred, Jack Coyne, William Lynch, Vincent Natoli, Joseph Grecco, Joel Morrissette Smith-Waterman implementation on a FSB-FPGA module using the Intel Accelerator Abstraction Layer. Search on Bibsonomy IPDPS The full citation details ... 2009 DBLP  DOI  BibTeX  RDF
112Shannon Steinfadt, Johnnie W. Baker SWAMP: Smith-Waterman using associative massive parallelism. Search on Bibsonomy IPDPS The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
112Mustafa Gök, Çaglar Yilmaz Efficient Cell Designs for Systolic Smith-Waterman Implementations. Search on Bibsonomy FPL The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
105Peiheng Zhang, Guangming Tan, Guang R. Gao Implementation of the Smith-Waterman algorithm on a reconfigurable supercomputing platform. Search on Bibsonomy HPRCTA The full citation details ... 2007 DBLP  DOI  BibTeX  RDF reconfigurable supercomputing, FPGA, coprocessor, Smith-Waterman algorithm
92Shuangyuan Wu, Shihong Xia, Zhaoqi Wang, Chunpeng Li Efficient motion data indexing and retrieval with local similarity measure of motion strings. Search on Bibsonomy Vis. Comput. The full citation details ... 2009 DBLP  DOI  BibTeX  RDF Indexing, Self-organizing map, Retrieval, Smith-Waterman algorithm, Motion capture data
87Brandon Harris, Arpith C. Jacob, Joseph M. Lancaster, Jeremy Buhler, Roger D. Chamberlain A Banded Smith-Waterman FPGA Accelerator for Mercury BLASTP. Search on Bibsonomy FPL The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
87Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Mauricio Ayala-Rincón, Thomas Mailleux Santana Parallel Smith-Waterman Algorithm for Local DNA Comparison in a Cluster of Workstations. Search on Bibsonomy WEA The full citation details ... 2005 DBLP  DOI  BibTeX  RDF
87Chi Wai Yu, K. H. Kwong, Kin-Hong Lee, Philip Heng Wai Leong A Smith-Waterman Systolic Cell. Search on Bibsonomy FPL The full citation details ... 2003 DBLP  DOI  BibTeX  RDF
74Gabriel Caffarena, Slobodan Bojanic, Juan A. López, Carlos E. Pedreira, Octavio Nieto-Taladriz High-speed systolic array for gene matching. Search on Bibsonomy FPGA The full citation details ... 2004 DBLP  DOI  BibTeX  RDF
74Stefan Dydel, Piotr Bala Large Scale Protein Sequence Alignment Using FPGA Reprogrammable Logic Devices. Search on Bibsonomy FPL The full citation details ... 2004 DBLP  DOI  BibTeX  RDF
74Eric Breimer, Mark K. Goldberg Learning Significant Alignments: An Alternative to Normalized Local Alignment. Search on Bibsonomy ISMIS The full citation details ... 2002 DBLP  DOI  BibTeX  RDF
74Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner A new approach to sequence comparison: normalized sequence alignment. Search on Bibsonomy RECOMB The full citation details ... 2001 DBLP  DOI  BibTeX  RDF
68Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences. Search on Bibsonomy PPoPP The full citation details ... 2010 DBLP  DOI  BibTeX  RDF biological sequence comparison, gpu, smith-waterman
68Shuangyuan Wu, Zhaoqi Wang, Shihong Xia Indexing and retrieval of human motion data by a hierarchical tree. Search on Bibsonomy VRST The full citation details ... 2009 DBLP  DOI  BibTeX  RDF indexing, self-organizing map, motion capture, retrieval, hierarchical clustering, Smith-Waterman algorithm
68Takahisa Ota, Shigeru Masuyama Automatic plagiarism detection among term papers. Search on Bibsonomy IUCS The full citation details ... 2009 DBLP  DOI  BibTeX  RDF partial text alignment, term papers, dynamic programming, plagiarism detection, Smith-Waterman algorithm
68Ashwin M. Aji, Wu-chun Feng, Filip Blagojevic, Dimitrios S. Nikolopoulos Cell-SWat: modeling and scheduling wavefront computations on the cell broadband engine. Search on Bibsonomy Conf. Computing Frontiers The full citation details ... 2008 DBLP  DOI  BibTeX  RDF wavefront algorithms, cell broadband engine, smith-waterman
68Somesh Jha, Louis Kruger, Vitaly Shmatikov Towards Practical Privacy for Genomic Computation. Search on Bibsonomy SP The full citation details ... 2008 DBLP  DOI  BibTeX  RDF Privacy, Edit Distance, Genome, Secure Multi-Party Computation, Smith-Waterman
68Chunyan Wang 0002, Paul M. K. Gordon, Andrei L. Turinsky, Jason Burgess, Terry Dalton, Christoph W. Sensen Combining a High-Throughput Bioinformatics Grid and Bioinformatics Web Services. Search on Bibsonomy GCCB The full citation details ... 2006 DBLP  DOI  BibTeX  RDF BioMOBY, Sun N1 Grid Engine, Web services, grid, hidden Markov model, Bioinformatics, sequence alignment, Smith-Waterman
68Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell Hyper customized processors for bio-sequence database scanning on FPGAs. Search on Bibsonomy FPGA The full citation details ... 2005 DBLP  DOI  BibTeX  RDF dynamic re-configuration, FPGA, bio-informatics, Smith-Waterman
62Zubair Nawaz, Zaid Al-Ars, Koen Bertels, Mudassir Shabbir Acceleration of Smith-Waterman using Recursive Variable Expansion. Search on Bibsonomy DSD The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
62Yuma Munekawa, Fumihiko Ino, Kenichi Hagihara Design and implementation of the Smith-Waterman algorithm on the CUDA-compatible GPU. Search on Bibsonomy BIBE The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
62Daniel E. Riedel, Svetha Venkatesh, Wanquan Liu A Smith-Waterman Local Alignment Approach for Spatial Activity Recognition. Search on Bibsonomy AVSS The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
62Yang Liu, Wayne Huang 0002, John Johnson, Sheila Vaidya GPU Accelerated Smith-Waterman. Search on Bibsonomy International Conference on Computational Science (4) The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
62Patrick May, Gunnar W. Klau, Markus Bauer 0001, Thomas Steinke 0001 Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs. Search on Bibsonomy GCCB The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
62Gene Myers, Richard Durbin Invited Lecture - Accelerating Smith-Waterman Searches. Search on Bibsonomy WABI The full citation details ... 2002 DBLP  DOI  BibTeX  RDF
50Gregory M. Striemer, Ali Akoglu Sequence alignment with GPU: Performance and design challenges. Search on Bibsonomy IPDPS The full citation details ... 2009 DBLP  DOI  BibTeX  RDF
50Betul Buyukkurt, Walid A. Najjar Compiler generated systolic arrays for wavefront algorithm acceleration on FPGAs. Search on Bibsonomy FPL The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
50Xinghui Wang, Du Xu An Efficient Sequence Alignment Algorithm of Network Traffic. Search on Bibsonomy ICNSC The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
50Arpith C. Jacob, Sugata Sanyal, Marcin Paprzycki, Rajan Arora, Maria Ganzha Whole Genome Comparison on a Network of Workstations. Search on Bibsonomy ISPDC The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
50Khaled Benkrid, Ying Liu 0003, Abdsamad Benkrid Design and Implementation of a Highly Parameterised FPGA-Based Skeleton for Pairwise Biological Sequence Alignment. Search on Bibsonomy FCCM The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
50J. Javier Martínez-Álvarez, F. Javier Toledo-Moreo, José Manuel Ferrández de Vicente Discrete-Time Cellular Neural Networks in FPGA. Search on Bibsonomy FCCM The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
50Rolf Backofen, Danny Hermelin, Gad M. Landau, Oren Weimann Local Alignment of RNA Sequences with Arbitrary Scoring Schemes. Search on Bibsonomy CPM The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
50Weiguo Liu, Bertil Schmidt, Gerrit Voss, Adrian Schröder, Wolfgang Müller-Wittig Bio-sequence database scanning on a GPU. Search on Bibsonomy IPDPS The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
50Friman Sánchez, Esther Salamí, Alex Ramírez, Mateo Valero Performance Analysis of Sequence Alignment Applications. Search on Bibsonomy IISWC The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
50Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Mauricio Ayala-Rincón, Thomas Mailleux Santana Parallel Strategies for Local Biological Sequence Alignment in a Cluster of Workstations. Search on Bibsonomy IPDPS The full citation details ... 2005 DBLP  DOI  BibTeX  RDF
50Greg Knowles, Paul Gardner-Stephen A New Hardware Architecture for Genomic and Proteomic Sequence Alignment. Search on Bibsonomy CSB The full citation details ... 2004 DBLP  DOI  BibTeX  RDF
50Xiaojun Guan, Richard J. Mural, Edward C. Uberbacher Sequence comparison on a cluster of workstations using the PVM system. Search on Bibsonomy IPPS The full citation details ... 1995 DBLP  DOI  BibTeX  RDF PVM system, molecular biology research, DNA data, Intel iPSC/860 hypercube, Internet servers GRAIL, GENQUEST, Internet, performance, hypercube networks, DNA, cluster of workstations, massively parallel computer, medical computing, sequence comparison, molecular biophysics
43Xiandong Meng, Vipin Chaudhary A High-Performance Heterogeneous Computing Platform for Biological Sequence Analysis. Search on Bibsonomy IEEE Trans. Parallel Distributed Syst. The full citation details ... 2010 DBLP  DOI  BibTeX  RDF Index Term—Heterogeneous computing platform, FPGA, dynamic programming, MPI, SIMD, sequence alignment, HPC, Smith-Waterman algorithm, SSE2
43Sunita Chandrasekaran, Shilpa Shanbagh, Douglas L. Maskell A dependency graph based methodology for parallelizing HLL applications on FPGA (abstract only). Search on Bibsonomy FPGA The full citation details ... 2010 DBLP  DOI  BibTeX  RDF fpgas, bioinformatics, sequence alignment, data dependency analysis, smith-waterman algorithm
43David Hoksza Improved Alignment of Protein Sequences Based on Common Parts. Search on Bibsonomy ISBRA The full citation details ... 2008 DBLP  DOI  BibTeX  RDF Smith-Waterman algorithm, protein databases
43Xiandong Meng, Vipin Chaudhary An adaptive data prefetching scheme for biosequence database search on reconfigurable platforms. Search on Bibsonomy SAC The full citation details ... 2007 DBLP  DOI  BibTeX  RDF FPGA, data prefetching, DMA, Smith-Waterman algorithm
43Le Phong Bao Vuong, Xiaoying Gao Using Clustering for Web Information Extraction. Search on Bibsonomy Australian Conference on Artificial Intelligence The full citation details ... 2007 DBLP  DOI  BibTeX  RDF clustering, Information extraction, Smith-Waterman algorithm
38Samantha Petti, Nicholas Bhattacharya, Roshan Rao, Justas Dauparas, Neil Thomas, Juannan Zhou, Alexander M. Rush, Peter Koo, Sergey Ovchinnikov End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman. Search on Bibsonomy Bioinform. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
38Yaning Wang, Zhiguang Chen, Yuxiao Han Accelerating the Smith-Waterman algorithm by GPU for high-throughput sequence alignment. Search on Bibsonomy MICML The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
38Junhyuk Baik, Donghui Lee, Yongtae Kim A Smith-Waterman Hardware Accelerator Design using Sliding Window for Genomic Sequence Alignment. Search on Bibsonomy ISOCC The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
38Konstantina Koliogeorgi, Dimitrios Soudris, Sotirios Xydis Profile-Driven Banded Smith-Waterman acceleration for Short Read Alignment. Search on Bibsonomy DAC The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
38Manuel Costanzo, Enzo Rucci, Carlos García Sánchez 0001, Marcelo R. Naiouf, Manuel Prieto-Matías Migrating CUDA to oneAPI: A Smith-Waterman Case Study. Search on Bibsonomy CoRR The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
38Rafael Hidalgo, Anthony DeVito, Nesreen Salah, Aparna S. Varde, Robert W. Meredith Inferring Phylogenetic Relationships using the Smith-Waterman Algorithm and Hierarchical Clustering. Search on Bibsonomy IEEE Big Data The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
38Manuel Costanzo, Enzo Rucci, Carlos García Sánchez 0001, Marcelo R. Naiouf, Manuel Prieto-Matías Migrating CUDA to oneAPI: A Smith-Waterman Case Study. Search on Bibsonomy IWBBIO (2) The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
38Luyi Li, Jun Lin 0001, Zhongfeng Wang 0001 PipeBSW: A Two-Stage Pipeline Structure for Banded Smith-Waterman Algorithm on FPGA. Search on Bibsonomy ISVLSI The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
38Mahdi Taheri, Hamed Zandevakili, Ali Mahani 0001 A high-performance MEMRISTOR-based Smith-Waterman DNA sequence alignment Using FPNI structure. Search on Bibsonomy CoRR The full citation details ... 2020 DBLP  BibTeX  RDF
38Yujie Zhang, Jiajun Wu 0004, Minghao Li, Jun Lin 0001, Zhongfeng Wang 0001 A Three-Level Scoring System for Fast Similarity Evaluation Based on Smith-Waterman Algorithm. Search on Bibsonomy ISCAS The full citation details ... 2020 DBLP  DOI  BibTeX  RDF
38Takahiro Nishimura, Jacir Luiz Bordim, Yasuaki Ito, Koji Nakano Accelerating the Smith-Waterman Algorithm Using the Bitwise Parallel Bulk Computation Technique on the GPU. Search on Bibsonomy IEICE Trans. Inf. Syst. The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
38Huihui Zou, Shanjiang Tang, Ce Yu, Hao Fu, Yusen Li, Wenjie Tang ASW: Accelerating Smith-Waterman Algorithm on Coupled CPU-GPU Architecture. Search on Bibsonomy Int. J. Parallel Program. The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
38Enzo Rucci, Carlos García Sánchez 0001, Guillermo Botella Juan, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías SWIMM 2.0: Enhanced Smith-Waterman on Intel's Multicore and Manycore Architectures Based on AVX-512 Vector Extensions. Search on Bibsonomy Int. J. Parallel Program. The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
38Roman Snytsar De(con)struction of the lazy-F loop: improving performance of Smith Waterman alignment. Search on Bibsonomy CoRR The full citation details ... 2019 DBLP  BibTeX  RDF
38D. Venkata Vara Prasad, Suresh Jaganathan Improving the performance of Smith-Waterman sequence algorithm on GPU using shared memory for biological protein sequences. Search on Bibsonomy Clust. Comput. The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
38Meysam Roodi, Andreas Moshovos SW+: On Accelerating Smith-Waterman Execution of GATK HaplotypeCaller. Search on Bibsonomy CIBB The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
38Roman Snytsar De(con) Struction of the Lazy-F Loop: Improving Performance of Smith Waterman Alignment. Search on Bibsonomy BIBE The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
38Konstantina Koliogeorgi, Nils Voss, Sotiria Fytraki, Sotirios Xydis, Georgi Gaydadjiev, Dimitrios Soudris Dataflow Acceleration of Smith-Waterman with Traceback for High Throughput Next Generation Sequencing. Search on Bibsonomy FPL The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
38Alexander Tiskin Bounded-Length Smith-Waterman Alignment. Search on Bibsonomy WABI The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
38Ibrahim M. El-Henawy, Kareem Ahmed, Hamdi Mahmoud Action recognition using fast HOG3D of integral videos and Smith-Waterman partial matching. Search on Bibsonomy IET Image Process. The full citation details ... 2018 DBLP  DOI  BibTeX  RDF
38Enzo Rucci, Carlos García 0001, Guillermo Botella, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto 0001 SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences. Search on Bibsonomy BMC Syst. Biol. The full citation details ... 2018 DBLP  DOI  BibTeX  RDF
38Marek Palkowski, Wlodzimierz Bielecki Parallel Tiled Codes Implementing the Smith-Waterman Alignment Algorithm for Two and Three Sequences. Search on Bibsonomy J. Comput. Biol. The full citation details ... 2018 DBLP  DOI  BibTeX  RDF
38Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars Comparative Analysis of System-Level Acceleration Techniques in Bioinformatics: A Case Study of Accelerating the Smith-Waterman Algorithm for BWA-MEM. Search on Bibsonomy BIBE The full citation details ... 2018 DBLP  DOI  BibTeX  RDF
38Yi-Lun Liao, Yu-Cheng Li, Nae-Chyun Chen, Yi-Chang Lu Adaptively Banded Smith-Waterman Algorithm for Long Reads and Its Hardware Accelerator. Search on Bibsonomy ASAP The full citation details ... 2018 DBLP  DOI  BibTeX  RDF
38Enzo Rucci, Carlos García 0001, Guillermo Botella, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías First Experiences Optimizing Smith-Waterman on Intel's Knights Landing Processor. Search on Bibsonomy CoRR The full citation details ... 2017 DBLP  BibTeX  RDF
38Lorenzo Di Tucci, Kenneth O'Brien, Michaela Blott, Marco D. Santambrogio Architectural optimizations for high performance and energy efficient Smith-Waterman implementation on FPGAs using OpenCL. Search on Bibsonomy DATE The full citation details ... 2017 DBLP  DOI  BibTeX  RDF
38Ernst Houtgast, Vlad Mihai Sima, Zaid Al-Ars High Performance Streaming Smith-Waterman Implementation with Implicit Synchronization on Intel FPGA using OpenCL. Search on Bibsonomy BIBE The full citation details ... 2017 DBLP  DOI  BibTeX  RDF
38Bo Xu, Changlong Li, Hang Zhuang, Jiali Wang, Qingfeng Wang, Xuehai Zhou Efficient Distributed Smith-Waterman Algorithm Based on Apache Spark. Search on Bibsonomy CLOUD The full citation details ... 2017 DBLP  DOI  BibTeX  RDF
38Simone Casale Brunet, Endri Bezati, Marco Mattavelli Design space exploration of dataflow-based Smith-Waterman FPGA implementations. Search on Bibsonomy SiPS The full citation details ... 2017 DBLP  DOI  BibTeX  RDF
38Simone Casale Brunet, Endri Bezati, Marco Mattavelli High level synthesis of Smith-Waterman dataflow implementations. Search on Bibsonomy ICASSP The full citation details ... 2017 DBLP  DOI  BibTeX  RDF
38Takahiro Nishimura, Jacir Luiz Bordim, Yasuaki Ito, Koji Nakano Accelerating the Smith-Waterman Algorithm Using Bitwise Parallel Bulk Computation Technique on GPU. Search on Bibsonomy IPDPS Workshops The full citation details ... 2017 DBLP  DOI  BibTeX  RDF
38William B. Yates, Edward C. Keedwell Clustering of hyper-heuristic selections using the Smith-Waterman algorithm for offline learning. Search on Bibsonomy GECCO (Companion) The full citation details ... 2017 DBLP  DOI  BibTeX  RDF
38Kazuki Yasui, Fumihiko Ino Accelerating scoring computation of Smith-Waterman algorithm with mixed word length. Search on Bibsonomy BIBM The full citation details ... 2017 DBLP  DOI  BibTeX  RDF
38Karl Buhagiar, Owen Casha, Ivan Grech, Edward Gatt, Joseph Micallef Hardware implementation of efficient path reconstruction for the Smith-Waterman algorithm. Search on Bibsonomy CoDIT The full citation details ... 2017 DBLP  DOI  BibTeX  RDF
38Enzo Rucci, Carlos García 0001, Guillermo Botella, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías First Experiences Accelerating Smith-Waterman on Intel's Knights Landing Processor. Search on Bibsonomy ICA3PP The full citation details ... 2017 DBLP  DOI  BibTeX  RDF
38Jesús Pérez Serrano, Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo, Manuel Ujaldón Smith-Waterman Acceleration in Multi-GPUs: A Performance per Watt Analysis. Search on Bibsonomy IWBBIO (2) The full citation details ... 2017 DBLP  DOI  BibTeX  RDF
38Enzo Rucci, Carlos García 0001, Guillermo Botella, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías Accelerating Smith-Waterman Alignment of Long DNA Sequences with OpenCL on FPGA. Search on Bibsonomy IWBBIO (2) The full citation details ... 2017 DBLP  DOI  BibTeX  RDF
38Dong-Hyeon Park, Jonathan Beaumont, Trevor N. Mudge Accelerating Smith-Waterman Alignment Workload with Scalable Vector Computing. Search on Bibsonomy CLUSTER The full citation details ... 2017 DBLP  DOI  BibTeX  RDF
38Atef Ibrahim, Hamed Elsimary, Abdullah Aljumah Novel Reconfigurable Hardware Accelerator for Protein Sequence Alignment Using Smith-Waterman Algorithm. Search on Bibsonomy IEICE Trans. Fundam. Electron. Commun. Comput. Sci. The full citation details ... 2016 DBLP  DOI  BibTeX  RDF
38Hurmat Ali Shah, Laiq Hasan, Insoo Koo Optimized and Portable FPGA-Based Systolic Cell Architecture for Smith-Waterman-Based DNA Sequence Alignment. Search on Bibsonomy J. Inform. and Commun. Convergence Engineering The full citation details ... 2016 DBLP  DOI  BibTeX  RDF
38Sergio Gálvez, Adis Ferusic, Francisco José Esteban 0002, Pilar Hernández, Juan Antonio Caballero, Gabriel Dorado Speeding-up Bioinformatics Algorithms with Heterogeneous Architectures: Highly Heterogeneous Smith-Waterman (HHeterSW). Search on Bibsonomy J. Comput. Biol. The full citation details ... 2016 DBLP  DOI  BibTeX  RDF
38B. Ashwini, Vijay Krishna Menon, K. P. Soman Prediction of Malicious Domains Using Smith Waterman Algorithm. Search on Bibsonomy SSCC The full citation details ... 2016 DBLP  DOI  BibTeX  RDF
38Wael Abou El-Wafa, Asmaa G. Seliem, Hesham F. A. Hamed Hardware Acceleration of Smith-Waterman Algorithm for Short Read DNA Alignment Using FPGA. Search on Bibsonomy COMPSAC Workshops The full citation details ... 2016 DBLP  DOI  BibTeX  RDF
38Vijay Naidu, Ajit Narayanan Needleman-Wunsch and Smith-Waterman Algorithms for Identifying Viral Polymorphic Malware Variants. Search on Bibsonomy DASC/PiCom/DataCom/CyberSciTech The full citation details ... 2016 DBLP  DOI  BibTeX  RDF
38Enzo Rucci, Carlos García 0001, Guillermo Botella, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías An energy-aware performance analysis of SWIMM: Smith-Waterman implementation on Intel's Multicore and Manycore architectures. Search on Bibsonomy Concurr. Comput. Pract. Exp. The full citation details ... 2015 DBLP  DOI  BibTeX  RDF
38Daiki Okada, Fumihiko Ino, Kenichi Hagihara Accelerating the Smith-Waterman algorithm with interpair pruning and band optimization for the all-pairs comparison of base sequences. Search on Bibsonomy BMC Bioinform. The full citation details ... 2015 DBLP  DOI  BibTeX  RDF
38Xiaowen Feng, Hai Jin 0001, Ran Zheng, Lei Zhu 0002, Weiqi Dai Accelerating Smith-Waterman Alignment of Species-Based Protein Sequences on GPU. Search on Bibsonomy Int. J. Parallel Program. The full citation details ... 2015 DBLP  DOI  BibTeX  RDF
38Heba Khaled, Hossam El Deen Mostafa Faheem, Rania El-Gohary Design and implementation of a hybrid MPI-CUDA model for the Smith-Waterman algorithm. Search on Bibsonomy Int. J. Data Min. Bioinform. The full citation details ... 2015 DBLP  DOI  BibTeX  RDF
38Matthew B. Baker, Aaron Welch, Manjunath Gorentla Venkata Parallelizing the Smith-Waterman Algorithm Using OpenSHMEM and MPI-3 One-Sided Interfaces. Search on Bibsonomy OpenSHMEM The full citation details ... 2015 DBLP  DOI  BibTeX  RDF
38Enzo Rucci, Carlos García 0001, Guillermo Botella Juan, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías Smith-Waterman Protein Search with OpenCL on an FPGA. Search on Bibsonomy TrustCom/BigDataSE/ISPA (3) The full citation details ... 2015 DBLP  DOI  BibTeX  RDF
38Yongchao Liu, Bertil Schmidt SWAPHI: Smith-Waterman Protein Database Search on Xeon Phi Coprocessors. Search on Bibsonomy CoRR The full citation details ... 2014 DBLP  BibTeX  RDF
38Juan M. Marmolejo-Tejada, Vladimir Trujillo-Olaya, Claudia Patricia Renteria-Mejia, Jaime Velasco-Medina Hardware implementation of the Smith-Waterman algorithm using a systolic architecture. Search on Bibsonomy LASCAS The full citation details ... 2014 DBLP  DOI  BibTeX  RDF
38Jaime Seguel Mathematics of the Design of a Parallel Mapping Assembly Algorithm - Combining Smith-Waterman and Hirschberg's LCS Methods. Search on Bibsonomy BIOINFORMATICS The full citation details ... 2014 DBLP  DOI  BibTeX  RDF
38Yongchao Liu, Bertil Schmidt SWAPHI: Smith-waterman protein database search on Xeon Phi coprocessors. Search on Bibsonomy ASAP The full citation details ... 2014 DBLP  DOI  BibTeX  RDF
38Gianvito Urgese, Giulia Paciello, Andrea Acquaviva, Elisa Ficarra, Mariagrazia Graziano, Maurizio Zamboni Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimization. Search on Bibsonomy IWBBIO The full citation details ... 2014 DBLP  BibTeX  RDF
38Enzo Rucci, Armando De Giusti, Marcelo R. Naiouf, Guillermo Botella Juan, Carlos García 0001, Manuel Prieto-Matías Smith-Waterman algorithm on heterogeneous systems: A case study. Search on Bibsonomy CLUSTER The full citation details ... 2014 DBLP  DOI  BibTeX  RDF
38Yongchao Liu, Tuan Tu Tran, Felix Lauenroth, Bertil Schmidt SWAPHI-LS: Smith-Waterman Algorithm on Xeon Phi coprocessors for Long DNA Sequences. Search on Bibsonomy CLUSTER The full citation details ... 2014 DBLP  DOI  BibTeX  RDF
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