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Venues (Conferences, Journals, ...)
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GrowBag graphs for keyword ? (Num. hits/coverage)
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The graphs summarize 2 occurrences of 2 keywords
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Results
Found 27 publication records. Showing 27 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
224 | Kuo-ching Liang, Xiaodong Wang 0001, Dimitris Anastassiou |
Bayesian Basecalling for DNA Sequence Analysis Using Hidden Markov Models. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE ACM Trans. Comput. Biol. Bioinform. ![In: IEEE ACM Trans. Comput. Biol. Bioinform. 4(3), pp. 430-440, 2007. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
Markov chain Monte Carlo (MCMC), electropherogram, basecalling, hidden Markov model (HMM), DNA sequencing |
188 | David Thornley, Stavros Petridis |
Machine Learning in Basecalling Decoding Trace Peak Behaviour. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CIBCB ![In: Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2006, Renaissance Hotel Downtown, Toronto, Ontario, Canada, September 28-29, 2006, pp. 1-8, 2006, IEEE, 1-4244-0623-4. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
82 | Anna Tonazzini, Luigi Bedini |
Statistical Analysis of Electrophoresis Time Series for Improving Basecalling in DNA Sequencing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
MDA ![In: Advances in Mass Data Analysis of Signals and Images in Medicine, Biotechnology and Chemistry, International Conferences, MDA 2006/2007, Leipzig, Germany, July 18, 2007. Selected Papers, pp. 146-155, 2007, Springer, 978-3-540-76299-7. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
58 | Meryem Banu Cavlak, Gagandeep Singh 0002, Mohammed Alser, Can Firtina, Joël Lindegger, Mohammad Sadrosadati, Nika Mansouri-Ghiasi, Can Alkan, Onur Mutlu |
TargetCall: Eliminating the Wasted Computation in Basecalling via Pre-Basecalling Filtering. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2212.04953, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
53 | David Thornley, Stavros Petridis |
Decoding Trace Peak Behaviour - A Neuro-Fuzzy Approach. ![Search on Bibsonomy](Pics/bibsonomy.png) |
FUZZ-IEEE ![In: FUZZ-IEEE 2007, IEEE International Conference on Fuzzy Systems, Imperial College, London, UK, 23-26 July, 2007, Proceedings, pp. 1-6, 2007, IEEE. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
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29 | Taha Shahroodi, Gagandeep Singh 0002, Mahdi Zahedi, Haiyu Mao, Joël Lindegger, Can Firtina, Stephan Wong, Onur Mutlu, Said Hamdioui |
Swordfish: A Framework for Evaluating Deep Neural Network-based Basecalling using Computation-In-Memory with Non-Ideal Memristors. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2310.04366, 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
29 | Wiktor Kusmirek |
Estimated Nucleotide Reconstruction Quality Symbols of Basecalling Tools for Oxford Nanopore Sequencing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Sensors ![In: Sensors 23(15), pp. 6787, August 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
29 | Taha Shahroodi, Gagandeep Singh 0002, Mahdi Zahedi, Haiyu Mao, Joël Lindegger, Can Firtina, Stephan Wong, Onur Mutlu, Said Hamdioui |
Swordfish: A Framework for Evaluating Deep Neural Network-based Basecalling using Computation-In-Memory with Non-Ideal Memristors. ![Search on Bibsonomy](Pics/bibsonomy.png) |
MICRO ![In: Proceedings of the 56th Annual IEEE/ACM International Symposium on Microarchitecture, MICRO 2023, Toronto, ON, Canada, 28 October 2023 - 1 November 2023, pp. 1437-1452, 2023, ACM. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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29 | J. White Bear, Grégoire De Bisschop, Eric Lécuyer, Jérôme Waldispühl |
Localized, Non-parametric Detection of RNA Structural Modification using Nanopore Basecalling. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BCB ![In: Proceedings of the 14th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2023, Houston, TX, USA, September 3-6, 2023, pp. 38:1-38:8, 2023, ACM. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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29 | Don Neumann, Anireddy S. N. Reddy, Asa Ben-Hur |
RODAN: a fully convolutional architecture for basecalling nanopore RNA sequencing data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 23(1), pp. 142, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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29 | Haiyu Mao, Mohammed Alser, Mohammad Sadrosadati, Can Firtina, Akanksha Baranwal, Damla Senol Cali, Aditya Manglik, Nour Almadhoun Alserr, Onur Mutlu |
GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read Mapping. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2209.08600, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
29 | Adam Napieralski, Robert Nowak 0002 |
Basecalling Using Joint Raw and Event Nanopore Data Sequence-to-Sequence Processing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Sensors ![In: Sensors 22(6), pp. 2275, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
29 | Haiyu Mao, Mohammed Alser, Mohammad Sadrosadati, Can Firtina, Akanksha Baranwal, Damla Senol Cali, Aditya Manglik, Nour Almadhoun Alserr, Onur Mutlu |
GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read Mapping. ![Search on Bibsonomy](Pics/bibsonomy.png) |
MICRO ![In: 55th IEEE/ACM International Symposium on Microarchitecture, MICRO 2022, Chicago, IL, USA, October 1-5, 2022, pp. 710-726, 2022, IEEE, 978-1-6654-6272-3. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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29 | Alexandra Sneddon, Pablo Acera Mateos, Nikolay Shirokikh, Eduardo Eyras |
Language-Informed Basecalling Architecture for Nanopore Direct RNA Sequencing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
MLCB ![In: Machine Learning in Computational Biology, 21-22 November 2022, Online, pp. 150-165, 2022, PMLR. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP BibTeX RDF |
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29 | Shubham Chandak, Kedar Tatwawadi, Srivatsan Sridhar, Tsachy Weissman |
Impact of lossy compression of nanopore raw signal data on basecalling and consensus accuracy. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(22-23), pp. 5313-5321, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
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29 | Piotr Grzesik, Dariusz Mrozek |
Serverless Nanopore Basecalling with AWS Lambda. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICCS (2) ![In: Computational Science - ICCS 2021 - 21st International Conference, Krakow, Poland, June 16-18, 2021, Proceedings, Part II, pp. 578-586, 2021, Springer, 978-3-030-77963-4. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
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29 | Yao-zhong Zhang, Arda Akdemir, Georg Tremmel, Seiya Imoto, Satoru Miyano, Tetsuo Shibuya, Rui Yamaguchi |
Nanopore basecalling from a perspective of instance segmentation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 21-S(3), pp. 136, April 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
|
29 | Qian Lou, Lei Jiang 0001 |
BRAWL: A Spintronics-Based Portable Basecalling-in-Memory Architecture for Nanopore Genome Sequencing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE Comput. Archit. Lett. ![In: IEEE Comput. Archit. Lett. 17(2), pp. 241-244, 2018. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
|
29 | Zhongpan Wu, Karim Hammad, Robinson Mittmann, Sebastian Magierowski, Ebrahim Ghafar-Zadeh, Xiaoyong Zhong |
FPGA-based DNA Basecalling Hardware Acceleration. ![Search on Bibsonomy](Pics/bibsonomy.png) |
MWSCAS ![In: IEEE 61st International Midwest Symposium on Circuits and Systems, MWSCAS 2018, Windsor, ON, Canada, August 5-8, 2018, pp. 1098-1101, 2018, IEEE, 978-1-5386-7392-8. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
|
29 | Thomas S. Rask, Bent Petersen, Donald S. Chen, Karen P. Day, Anders Gorm Pedersen |
Using expected sequence features to improve basecalling accuracy of amplicon pyrosequencing data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 17, pp. 176, 2016. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
|
29 | Chengjie Wang, Junli Zheng, Sebastian Magierowski, Ebrahim Ghafar-Zadeh |
Embedded CMOS basecalling for nanopore DNA sequencing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
EMBC ![In: 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016, Orlando, FL, USA, August 16-20, 2016, pp. 5745-5748, 2016, IEEE, 978-1-4577-0220-4. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
|
29 | Yiyun Huang, Sebastian Magierowski, Ebrahim Ghafar-Zadeh |
CMOS for high-speed nanopore DNA basecalling. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISCAS ![In: IEEE International Symposium on Circuits and Systems, ISCAS 2016, Montréal, QC, Canada, May 22-25, 2016, pp. 1078-1081, 2016, IEEE, 978-1-4799-5341-7. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
|
29 | Anna Tonazzini, Luigi Bedini |
Statistical analysis of electrophoresis time series for improving basecalling in DNA sequencing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICDM (Workshops) ![In: 6th Industrial Conference on Data Mining, Workshop Proceedings, ICDM 2006, Leipzig, Germany, July 14-15, 2006, pp. 76-85, 2006. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP BibTeX RDF |
|
29 | Kuo-ching Liang, Xiaodong Wang 0001, Dimitris Anastassiou |
Bayesian Basecalling for DNA Sequence Analysis using Hidden Markov Models. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CISS ![In: 40th Annual Conference on Information Sciences and Systems, CISS 2006, Princeton, NJ, USA, 22-24 March 2006., pp. 1599-1604, 2006, IEEE, 1-4244-0349-9. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
29 | Yiping Zhan, David Kulp |
Model-P: a basecalling method for resequencing microarrays of diploid samples. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ECCB/JBI ![In: ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28 - October 1, 2005, pp. 189, 2005. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
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29 | Petros Boufounos, Sameh El Difrawy, Dan Ehrlich |
Basecalling using hidden Markov models. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Frankl. Inst. ![In: J. Frankl. Inst. 341(1-2), pp. 23-36, 2004. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
|
29 | James B. Golden III, Deborah Torgersen, Clark Tibbetts |
Pattern Recognition for Automated DNA Sequencing: I. On-Line Signal Conditioning and Feature Extraction for Basecalling. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISMB ![In: Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, Bethesda, MD, USA, July 1993, pp. 136-144, 1993, AAAI, 0-929280-47-4. The full citation details ...](Pics/full.jpeg) |
1993 |
DBLP BibTeX RDF |
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