Search results for "biology"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
59	Ying Xie, Jayasimha Reddy Katukuri, Vijay V. Raghavan 0001, Tony Presti	Conceptual Biology Research Supporting Platform: Current Design and Future Directions.	Applications of Computational Intelligence in Biology	2008	DBLP DOI BibTeX RDF
58	Michiel J. L. de Hoon, Dennis Vitkup	Comparative Systems Biology of the Sporulation Initiation Network in Prokaryotes.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
52	Marc D. Riedel, Soha Hassoun, Ron Weiss, Pamela Silver, J. Christopher Anderson, Richard M. Murray	Joint DAC/IWBDA special session engineering biology: fundamentals and applications.	DAC	2010	DBLP DOI BibTeX RDF	bio-design automation, biological circuits, cellular programming, robustness, control, feedback, computational biology, system biology, modular designs, synthetic biology
52	Francisco José Romero-Campero, Hongqing Cao, Miguel Cámara, Natalio Krasnogor	Structure and parameter estimation for cell systems biology models.	GECCO	2008	DBLP DOI BibTeX RDF	modular biology, genetic algorithms, memetic algorithm, systems biology, p systems, synthetic biology
52	Sherief Reda	Using circuit structural analysis techniques for networks in systems biology.	SLIP	2009	DBLP DOI BibTeX RDF	networks, systems biology, rent's rule
52	Daisuke Kiga, Masayuki Yamamura	Synthetic Biology.	New Gener. Comput.	2008	DBLP DOI BibTeX RDF	Michaelis-Menten Formula, Phase Plain Analysis, Stochastic Physics, Gillespie’s Method, DNA Synthesis, Autonomous System, Synthetic Biology, Genetic Code, Non-linear Dynamics, Bifurcation Analysis
52	Weiguo Liu, Bertil Schmidt	Parallel Pattern-Based Systems for Computational Biology: A Case Study.	IEEE Trans. Parallel Distributed Syst.	2006	DBLP DOI BibTeX RDF	High-performance computational biology, hierarchical parallel genetic algorithms, parallel patterns, generic programming, dynamic programming algorithms
51	Alain Viari	How Does Computer Science Change Molecular Biology?	STACS	2003	DBLP DOI BibTeX RDF
47	Antonio López Jaimes, Carlos A. Coello Coello	An Introduction to Multi-Objective Evolutionary Algorithms and Some of Their Potential Uses in Biology.	Applications of Computational Intelligence in Biology	2008	DBLP DOI BibTeX RDF
47	François Fages	From Syntax to Semantics in Systems Biology Towards Automated Reasoning Tools.	Trans. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
47	Adelinde M. Uhrmacher, Daniela Degenring, Bernard P. Zeigler	Discrete Event Multi-level Models for Systems Biology.	Trans. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF
47	Barak Shenhav, Ariel Solomon, Doron Lancet, Ran Kafri	Early Systems Biology and Prebiotic Networks.	Trans. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF
47	Luca Cardelli	Abstract Machines of Systems Biology.	Trans. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF
46	David Roger Gilbert, Rainer Breitling, Monika Heiner	BioModel Engineering: Its role in Systems Biology and Synthetic Biology.	Formal Methods in Molecular Biology	2009	DBLP BibTeX RDF
46	Vijayalakshmi Chelliah, Lukas Endler, Nick S. Juty, Camille Laibe, Chen Li 0011, Nicolas Rodriguez 0001, Nicolas Le Novère	Data Integration and Semantic Enrichment of Systems Biology Models and Simulations.	DILS	2009	DBLP DOI BibTeX RDF	database annotation, computational systems biology, minimal requirement, data integration, semantic annotation, quantitative models
46	Ying Liang, Wenyong Wang, Shaochun Zhong, Qingrong Zhang, Yao Wang, Xiao-Lin Quan, Qian Xu 0004	Virtual Biology Modeling Method Based on Validity Confirmation Mechanism.	ICAT	2006	DBLP DOI BibTeX RDF	virtual biology model, valid confirmation, similarity appraisal, teaching confirmation, model match
45	Carl Zimmer	An Outsider's View of the Genome.	RECOMB	2006	DBLP DOI BibTeX RDF
43	Manuel J. Gómez, Ramón Alonso-Allende, Florencio Pazos, Osvaldo Graña, David de Juan, Alfonso Valencia	Accessible Protein Interaction Data for Network Modeling. Structure of the Information and Available Repositories.	Trans. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF
42	Bahrad A. Sokhansanj, Suman Datta, Xiaohua Hu 0001	Scalable Dynamic Fuzzy Biomolecular Network Models for Large Scale Biology.	Fuzzy Systems in Bioinformatics and Computational Biology	2009	DBLP DOI BibTeX RDF
42	Corrado Priami	Computational Thinking in Biology.	Trans. Comp. Sys. Biology	2007	DBLP DOI BibTeX RDF
42	Mario J. Pérez-Jiménez, Francisco José Romero-Campero	P Systems, a New Computational Modelling Tool for Systems Biology.	Trans. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
42	Magali Roux-Rouquié, Michel Soto	Virtualization in Systems Biology: Metamodels and Modeling Languages for Semantic Data Integration.	Trans. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF
42	Nicola Cannata, Flavio Corradini, Emanuela Merelli, Andrea Omicini, Alessandro Ricci	An Agent-Oriented Conceptual Framework for Systems Biology.	Trans. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF
42	Sudhakar Jonnalagadda, Rajagopalan Srinivasan	A Bayesian Approach for Integrating Transcription Regulation and Gene Expression: Application to Saccharomyces Cerevisiae Cell Cycle Data.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
41	Stephen Gilmore, Jane Hillston	Foreword.	SIGMETRICS Perform. Evaluation Rev.	2008	DBLP DOI BibTeX RDF
40	Pawel Widera, Jaume Bacardit, Natalio Krasnogor, Carlos García-Martínez, Manuel Lozano 0001	Evolutionary symbolic discovery for bioinformatics, systems and synthetic biology.	GECCO (Companion)	2010	DBLP DOI BibTeX RDF	genetic rogramming, data mining, modeling, optimisation, systems biology, protein structure, p systems, synthetic biology, evolutionary search
40	Ron Weiss	Synthetic biology: from modules to systems.	ACM Great Lakes Symposium on VLSI	2010	DBLP DOI BibTeX RDF	genetic circuits, synthetic biology
40	Davide Prandi	A Formal Approach to Molecular Docking.	CMSB	2006	DBLP DOI BibTeX RDF	Formal Methods, Systems Biology, Process Calculi, Molecular Docking, Drug Discovery
40	PLOS Computational Biology Staff	Correction: Mathematical modeling of the molecular switch of TNFR1-mediated signaling pathways applying Petri net formalism and in silico knockout analysis.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
40	PLOS Computational Biology Staff	Correction: Hybrid predictive coding: Inferring, fast and slow.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
40	PLOS Computational Biology Staff	Correction: Opponent learning with different representations in the cortico-basal ganglia pathways can develop obsession-compulsion cycle.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
40	PLOS Computational Biology Staff	Correction: A quantitative modelling approach for DNA repair on a population scale.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
40	PLOS Computational Biology Staff	Correction: Dynamic metabolic adaptation can promote species coexistence in competitive microbial communities.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
40	PLOS Computational Biology Staff	Correction: Up-down biphasic volume response of human red blood cells to PIEZO1 activation during capillary transits.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
40	PLOS Computational Biology Staff	Correction: Bayesian inference and comparison of stochastic transcription elongation models.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
40	PLOS Computational Biology Staff	Correction: Inferring transmission heterogeneity using virus genealogies: Estimation and targeted prevention.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
40	PLOS Computational Biology Staff	Correction: A new model for simultaneous dimensionality reduction and time-varying functional connectivity estimation.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
40	PLOS Computational Biology Staff	Correction: Decentralized control of insect walking: A simple neural network explains a wide range of behavioral and neurophysiological results.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
40	PLOS Computational Biology Staff	Correction: An antigenic diversification threshold for falciparum malaria transmission at high endemicity.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
40	PLOS Computational Biology Staff	Correction: Humans adapt their anticipatory eye movements to the volatility of visual motion properties.	PLoS Comput. Biol.	2020	DBLP DOI BibTeX RDF
40	Henry Mirsky, Jörg Stelling, Rudiyanto Gunawan, Neda Bagheri, Stephanie R. Taylor, Eric Kwei, Jason E. Shoemaker, Francis J. Doyle III	Automatic Control in Systems Biology.	Handbook of Automation	2009	DBLP DOI BibTeX RDF
40	Natalio Krasnogor	Synthetic biology: modelling and optimisation.	GECCO (Companion)	2009	DBLP DOI BibTeX RDF	tutorial slides
40	Carla Piazza, Alberto Policriti	Systems Biology: Models and Logics.	ICLP	2008	DBLP DOI BibTeX RDF
40	Craig A. Stewart, Malinda Lingwall, David A. Bader	Lecture on Progress toward Petascale Applications in Bioinformatics and Computational Biology.	BIBE	2007	DBLP DOI BibTeX RDF
40	Ajay K. Royyuru	Deep computing in biology: challenges and progress.	PACT	2006	DBLP DOI BibTeX RDF
40	Jasmin Fisher, Thomas A. Henzinger	Executable biology.	WSC	2006	DBLP DOI BibTeX RDF
40	Weiguo Liu, Bertil Schmidt	A Case Study on Pattern-Based Systems for High Performance Computational Biology.	IPDPS	2005	DBLP DOI BibTeX RDF
39	François Boulier, François Lemaire	Differential Algebra and System Modeling in Cellular Biology.	AB	2008	DBLP DOI BibTeX RDF	cellular biology, system modeling, Computer algebra, differential algebra
38	Temple F. Smith	Computational Biology: Its Challenges Past, Present, and Future.	RECOMB	2008	DBLP DOI BibTeX RDF
38	Carsten Maus, Mathias John, Mathias Röhl, Adelinde M. Uhrmacher	Hierarchical Modeling for Computational Biology.	SFM	2008	DBLP DOI BibTeX RDF	model components, DEVS, hierarchical models, pi calculus, multi-level modeling
38	Bud Mishra	Algebraic Systems Biology: Theses and Hypotheses.	AB	2007	DBLP DOI BibTeX RDF
38	François Fages, Sylvain Soliman	Type Inference in Systems Biology.	CMSB	2006	DBLP DOI BibTeX RDF
37	Claudio Eccher, Paola Lecca	Translating SBML Models into the Stochastic pi-Calculus for Stochastic Simulation.	Trans. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
36	Sucheendra K. Palaniappan, Ayako Yachie-Kinoshita, Samik Ghosh	Computational Systems Biology.	Encyclopedia of Bioinformatics and Computational Biology (2)	2019	DBLP DOI BibTeX RDF
36	Martin Golebiewski	Data Formats for Systems Biology and Quantitative Modeling.	Encyclopedia of Bioinformatics and Computational Biology (2)	2019	DBLP DOI BibTeX RDF
36	Socrates Dokos	Multi-Scale Modelling in Biology.	Encyclopedia of Bioinformatics and Computational Biology (2)	2019	DBLP DOI BibTeX RDF
36	Giuseppe Cattaneo, Raffaele Giancarlo, Umberto Ferraro Petrillo, Gianluca Roscigno	MapReduce in Computational Biology Via Hadoop and Spark.	Encyclopedia of Bioinformatics and Computational Biology (1)	2019	DBLP DOI BibTeX RDF
36	Anna Bernasconi 0002, Marco Masseroli	Biological and Medical Ontologies: Systems Biology Ontology (SBO).	Encyclopedia of Bioinformatics and Computational Biology (1)	2019	DBLP DOI BibTeX RDF
36	Ayako Yachie-Kinoshita, Sucheendra K. Palaniappan, Samik Ghosh	Computational Systems Biology Applications.	Encyclopedia of Bioinformatics and Computational Biology (3)	2019	DBLP DOI BibTeX RDF
36	Valeria Fionda	Networks in Biology.	Encyclopedia of Bioinformatics and Computational Biology (1)	2019	DBLP DOI BibTeX RDF
36	Reinhard C. Laubenbacher, Franziska Hinkelmann, David Murrugarra, Alan Veliz-Cuba	Algebraic Models and Their Use in Systems Biology.	Discrete and Topological Models in Molecular Biology	2014	DBLP DOI BibTeX RDF
36	Jake Y. Chen, Heng Xu, Pan Shi, Adam Culbertson, Eric M. Meslin	Ethics and Privacy Considerations for Systems Biology Applications in Predictive and Personalized Medicine.	Handbook of Research on Computational and Systems Biology	2011	DBLP DOI BibTeX RDF
36	Bin Li	Using Systems Biology Approaches to Predict New Players in the Innate Immune System.	Handbook of Research on Computational and Systems Biology	2011	DBLP DOI BibTeX RDF
36	Patricio A. Manque, Ute Woehlbier	Systems Biology-Based Approaches Applied to Vaccine Development.	Handbook of Research on Computational and Systems Biology	2011	DBLP DOI BibTeX RDF
36	Tian Ge, Jianfeng Feng	Granger Causality: Its Foundation and Applications in Systems Biology.	Handbook of Research on Computational and Systems Biology	2011	DBLP DOI BibTeX RDF
36	José M. Castaño	Two views on crossing dependencies, language, biology and satisfiability.	Biology, Computation and Linguistics	2011	DBLP DOI BibTeX RDF
36	Pedro Mendes	Framework for Comparative Assessment of Parameter Estimation and Inference Methods in Systems Biology.	Learning and Inference in Computational Systems Biology	2010	DBLP BibTeX RDF
36	Alberto Apostolico, Andreas W. M. Dress, Laxmi Parida	10231 Abstracts Collection - Structure Discovery in Biology: Motifs, Networks & Phylogenies.	Structure Discovery in Biology: Motifs, Networks & Phylogenies	2010	DBLP BibTeX RDF
36	Rainer Breitling, David Roger Gilbert, Monika Heiner, Corrado Priami	09091 Executive Summary - Formal Methods in Molecular Biology.	Formal Methods in Molecular Biology	2009	DBLP BibTeX RDF
36	Rainer Breitling, David Roger Gilbert, Monika Heiner, Corrado Priami	09091 Abstracts Collection - Formal Methods in Molecular Biology.	Formal Methods in Molecular Biology	2009	DBLP BibTeX RDF
36	Trey Ideker, Vineet Bafna (eds.)	Systems Biology and Computational Proteomics, Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics, San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers	Systems Biology and Computational Proteomics	2007	DBLP DOI BibTeX RDF
36	Peter Saffrey, Ofer Margoninski, James Hetherington, Marta Varela-Rey, Sachie Yamaji, Anthony Finkelstein, Ian David Lockhart Bogle, Anne Warner	End-to-End Information Management for Systems Biology.	Trans. Comp. Sys. Biology	2007	DBLP DOI BibTeX RDF
36	Michael Biehl, Barbara Hammer, Michel Verleysen, Thomas Villmann	07131 Summary -- Similarity-based Clustering and its Application to Medicine and Biology.	Similarity-based Clustering and its Application to Medicine and Biology	2007	DBLP BibTeX RDF
36	Michael Biehl, Barbara Hammer, Michel Verleysen, Thomas Villmann	07131 Abstracts Collection -- Similarity-based Clustering and its Application to Medicine and Biology.	Similarity-based Clustering and its Application to Medicine and Biology	2007	DBLP BibTeX RDF
36	Eleazar Eskin, Trey Ideker, Benjamin J. Raphael, Christopher T. Workman (eds.)	Systems Biology and Regulatory Genomics, Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers	Systems Biology and Regulatory Genomics	2006	DBLP DOI BibTeX RDF
36	Ivan Arisi, Paola Roncaglia, Vittorio Rosato, Antonino Cattaneo	SYMBIONIC: A European Initiative on the Systems Biology of the Neuronal Cell.	Trans. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
36	Ofer Margoninski, Peter Saffrey, James Hetherington, Anthony Finkelstein, Anne Warner	A Specification Language and a Framework for the Execution of Composite Models in Systems Biology.	Trans. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
36	Rune Sætre, Harald Søvik, Tore Amble, Yoshimasa Tsuruoka	GeneTUC, GENIA and Google: Natural Language Understanding in Molecular Biology Literature.	Trans. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF	Biomedical Literature Data Mining, Google API, GENIA
36	Céline Lefebvre, Wei Keat Lim, Katia Basso, Riccardo Dalla Favera, Andrea Califano	A Context-Specific Network of Protein-DNA and Protein-Protein Interactions Reveals New Regulatory Motifs in Human B Cells.	Systems Biology and Computational Proteomics	2006	DBLP DOI BibTeX RDF	combinatorial regulation, evidence integration, human B cells, naïve Bayes, network motifs
36	Fereydoun Hormozdiari, Petra Berenbrink, Natasa Przulj, Süleyman Cenk Sahinalp	Not All Scale Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Emulation.	Systems Biology and Computational Proteomics	2006	DBLP DOI BibTeX RDF
36	Daniel P. Fasulo, Anne-Katrin Emde, Lu-Yong Wang, Karin Noy, Nathan Edwards	Alignment of Mass Spectrometry Data by Clique Finding and Optimization.	Systems Biology and Computational Proteomics	2006	DBLP DOI BibTeX RDF	bounded error model, clique finding, alignment, mass spectrometry
36	Jianhua Ruan, Weixiong Zhang	Identification and Evaluation of Functional Modules in Gene Co-expression Networks.	Systems Biology and Computational Proteomics	2006	DBLP DOI BibTeX RDF	co-expression networks, clustering, microarray, community identification
36	Mingzhou (Joe) Song, Z. Lewis Liu	A Linear Discrete Dynamic System Model for Temporal Gene Interaction and Regulatory Network Influence in Response to Bioethanol Conversion Inhibitor HMF for Ethanologenic Yeast.	Systems Biology and Computational Proteomics	2006	DBLP DOI BibTeX RDF
36	Derek A. Ruths, Jen-Te Tseng, Luay Nakhleh, Prahlad T. Ram	De Novo Signaling Pathway Predictions Based on Protein-Protein Interaction, Targeted Therapy and Protein Microarray Analysis.	Systems Biology and Computational Proteomics	2006	DBLP DOI BibTeX RDF
36	Yin Wu, Yehia Mechref, Iveta Klouckova, Milos V. Novotny, Haixu Tang	A Computational Approach for the Identification of Site-Specific Protein Glycosylations Through Ion-Trap Mass Spectrometry.	Systems Biology and Computational Proteomics	2006	DBLP DOI BibTeX RDF	Glycoproteomics, Site-specific Glycosylation, Algorithm, Mass spectrometry
36	Hans-Michael Kaltenbach, Sebastian Böcker, Sven Rahmann	Markov Additive Chains and Applications to Fragment Statistics for Peptide Mass Fingerprinting.	Systems Biology and Computational Proteomics	2006	DBLP DOI BibTeX RDF
36	Hailiang Huang, Lan V. Zhang, Frederick P. Roth, Joel S. Bader	Probabilistic Paths for Protein Complex Inference.	Systems Biology and Computational Proteomics	2006	DBLP DOI BibTeX RDF
36	Weihui Wu, Yongling Song, Shouguang Jin, Su-Shing Chen	An Interactive Map of Regulatory Networks of Pseudomonas aeruginosa Genome.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	Chien-Hung Huang, Jywe-Fei Fang, Jeffrey J. P. Tsai, Ka-Lok Ng	Topological Robustness of the Protein-Protein Interaction Networks.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	Aviv A. Mezer, Eran Bosis, Uri Ashery, Esther Nachliel, Menachem Gutman	A Comprehensive Kinetic Model of the Exocytotic Process: Evaluation of the Reaction Mechanism.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	Huiquan Wang, Craig J. Benham	Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	Sing-Hoi Sze, Xiaoyan Zhao	Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	Elissa J. Chesler, Michael A. Langston	Combinatorial Genetic Regulatory Network Analysis Tools for High Throughput Transcriptomic Data.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF	Putative Co-Regulation, Quantitative Trait Loci, Regulatory Models, Microarray Analysis
36	Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli	An Interaction-Dependent Model for Transcription Factor Binding.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	Michal Lapidot, Yitzhak Pilpel	Characterization of the Effects of TF Binding Site Variations on Gene Expression Towards Predicting the Functional Outcomes of Regulatory SNPs.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	Guandong Wang, Weixiong Zhang	Build a Dictionary, Learn a Grammar, Decipher Stegoscripts, and Discover Genomic Regulatory Elements.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	Chih-Yu Chen, Von-Wun Soo, Chi-Li Kuo	Application of Expectation Maximization Clustering to Transcription Factor Binding Positions for cDNA Microarray Analysis.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	Wolfgang P. Lehrach, Dirk Husmeier, Christopher K. I. Williams	Probabilistic in Silico Prediction of Protein-Peptide Interactions.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	Elena Zotenko, Katia S. Guimarães, Raja Jothi, Teresa M. Przytycka	Decomposition of Overlapping Protein Complexes: A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	Orna Man, Joel L. Sussman, Yitzhak Pilpel	Examination of the tRNA Adaptation Index as a Predictor of Protein Expression Levels.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF