Search results for "biomolecule"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
68	Shihhsien S. Kuo, Michael D. Altman, Jaydeep P. Bardhan, Bruce Tidor, Jacob K. White 0001	Fast methods for simulation of biomolecule electrostatics.	ICCAD	2002	DBLP DOI BibTeX RDF	Delphi
48	Derrel Blain, Max H. Garzon, Soo-Yong Shin, Byoung-Tak Zhang, Satoshi Kashiwamura, Masahito Yamamoto, Atsushi Kameda, Azuma Ohuchi	Development, evaluation and benchmarking of simulation software for biomolecule-based computing.	Nat. Comput.	2004	DBLP DOI BibTeX RDF	access and common repository, simulation, evaluation, user interfaces, software architecture, benchmarking, DNA-based computing
41	Chandrajit L. Bajaj, Guoliang Xu, Qin Zhang 0005	Higher-Order Level-Set Method and Its Application in Biomolecular Surfaces Construction.	J. Comput. Sci. Technol.	2008	DBLP DOI BibTeX RDF	higher-order spline level-set, geometric partial differential equation, biomolecular surface
41	Shih-Hsien Kuo, Jacob White 0001	A spectrally accurate integral equation solver for molecular surface electrostatics.	ICCAD	2006	DBLP DOI BibTeX RDF
41	Andrew Hendriks, Kay C. Wiese, Edward Glen	Comparison of Parallel and Serial Genetic Algorithms for RNA Secondary Structure Prediction.	Canadian AI	2004	DBLP DOI BibTeX RDF
36	Stephen D. Laycock, Matthew B. Stocks, Steven Hayward	Navigation and exploration of large data-sets using a haptic feedback device.	SIGGRAPH Posters	2010	DBLP DOI BibTeX RDF	biomolecule, elastic network model, force-feedback, protein, haptic rendering
27	Qizhi Pei, Lijun Wu, Kaiyuan Gao, Jinhua Zhu, Yue Wang 0017, Zun Wang, Tao Qin 0001, Rui Yan	Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey.	CoRR	2024	DBLP DOI BibTeX RDF
27	Jian-Jun Shu, Zi Hian Tan, Qi-Wen Wang, Kian Yan Yong	Programmable biomolecule-mediated processors.	CoRR	2024	DBLP DOI BibTeX RDF
27	Xinye Xiong, Bingxin Zhou, Yuguang Wang 0001	Graph Representation Learning for Interactive Biomolecule Systems.	CoRR	2023	DBLP DOI BibTeX RDF
27	Hippolyte Verdier, François Laurent, Alhassan Cassé, Christian L. Vestergaard, Christian G. Specht, Jean-Baptiste Masson	Simulation-based inference for non-parametric statistical comparison of biomolecule dynamics.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
27	Mohammad Salim Wani, Hend I. Alkhammash, M. Shiblee, Sajad A. Loan	Design and Simulation of Dual-Metal-Gate Tunnel Field Effect Transistor with Biomolecule Sensing Applications.	ICM	2023	DBLP DOI BibTeX RDF
27	Pooja Jain, Chithraja Rajan, Meena Panchore	A Novel Trench Cavity-Based CP-TFET for Label-Free Biomolecule Detection.	ICCCNT	2023	DBLP DOI BibTeX RDF
27	François Laurent, Hippolyte Verdier, Maxime Duval, Alexander Serov, Christian L. Vestergaard, Jean-Baptiste Masson	TRamWAy: mapping physical properties of individual biomolecule random motion in large-scale single-particle tracking experiments.	Bioinform.	2022	DBLP DOI BibTeX RDF
27	Yu Zhang 0084, Cangzhi Jia, Chee Keong Kwoh 0001	Predicting the interaction biomolecule types for lncRNA: an ensemble deep learning approach.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
27	Atsushi Tokuhisa, Ryo Kanada, Shuntaro Chiba, Kei Terayama, Yuta Isaka, Biao Ma, Narutoshi Kamiya, Yasushi Okuno	Coarse-Grained Diffraction Template Matching Model to Retrieve Multiconformational Models for Biomolecule Structures from Noisy Diffraction Patterns.	J. Chem. Inf. Model.	2020	DBLP DOI BibTeX RDF
27	Anamya Ajjolli Nagaraja	Modelling of Metabolic Pathways for Biomolecule Production in Cell-Free Systems. (Modélisation des voies métaboliques pour la production de biomolécules dans les systèmes acellulaires).		2020	RDF
27	Jiao Li, Jinyong Ying, Benzhuo Lu	A flux-jump preserved gradient recovery technique for accurately predicting the electrostatic field of an immersed biomolecule.	J. Comput. Phys.	2019	DBLP DOI BibTeX RDF
27	Tian Yu, Ashwini Bhat, Anthony Henderson, Jonathan Hull, Amar S. Basu	A Novel Computer Vision System for Integrated Biomolecule and Cell Assays.	IEEE SENSORS	2019	DBLP DOI BibTeX RDF
27	Kiichi Niitsu, Yuuki Yamaji, Atsuki Kobayashi, Kazuo Nakazato	A low-voltage CMOS electrophoresis IC using electroless gold plating for small-form-factor biomolecule manipulation.	ASP-DAC	2019	DBLP DOI BibTeX RDF
27	Yuuki Yamaji, Kazuo Nakazato, Kiichi Niitsu	Sub-1-V CMOS-Based Electrophoresis Using Electroless Gold Plating for Small-Form-Factor Biomolecule Manipulation.	IEICE Trans. Electron.	2017	DBLP DOI BibTeX RDF
27	Domenico Caputo, Emanuele Parisi, Augusto Nascetti, Mario Tucci, Giampiero de Cesare	Integration of Amorphous Silicon Photosensors with Thin Film Interferential Filter for Biomolecule Detection.	Sensors	2016	DBLP DOI BibTeX RDF
27	Jinyong Ying, Dexuan Xie	A new finite element and finite difference hybrid method for computing electrostatics of ionic solvated biomolecule.	J. Comput. Phys.	2015	DBLP DOI BibTeX RDF
27	Yan Zhao 0016	Droplet microfluidics for biomolecule separation and detection.		2015	RDF
27	Chuan He, Jie Chen 0002	Study of interactions between cells and microbubbles in high speed centrifugation field for biomolecule delivery.	EMBC	2014	DBLP DOI BibTeX RDF
27	Christian Wenger, Xenia Knigge, Mirko Fraschke, Dirk Wolansky, Philip Kulse, Udo Christian Kaletta, A. Wolff, W. Mehr, Eva-Maria Laux, Frank F. Bier, Ralph Hölzel	Label-free Immobilization of Nano-particles on Silicon based Electrodes for Single-biomolecule Studies.	BIODEVICES	2014	DBLP DOI BibTeX RDF
27	Taylor Busch, Bo Ma 0006, Steve Tung	Focus ion beam based nanofluidic system for biomolecule characterization.	NEMS	2014	DBLP DOI BibTeX RDF
27	Bryce W. Cronkite-Ratcliff, Vijay Pande	MSMExplorer: visualizing Markov state models for biomolecule folding simulations.	Bioinform.	2013	DBLP DOI BibTeX RDF
27	Hung-Yao Chu, Judy M. Obliosca, Pen-Cheng Wang, Fan-Gang Tseng	Strong SERS from gold nanostructure sandwiched on single layer graphene for high sensitive biomolecule detection.	NEMS	2013	DBLP DOI BibTeX RDF
27	Debarka Sengupta, Ujjwal Maulik, Sanghamitra Bandyopadhyay	Weighted Markov Chain Based Aggregation of Biomolecule Orderings.	IEEE ACM Trans. Comput. Biol. Bioinform.	2012	DBLP DOI BibTeX RDF
27	Tianhong Zhang, Hongli Li, Hualin Xi, Robert V. Stanton, Sergio H. Rotstein	HELM: A Hierarchical Notation Language for Complex Biomolecule Structure Representation.	J. Chem. Inf. Model.	2012	DBLP DOI BibTeX RDF
27	Asit K. Saha, Sean S. Kohles	A cell-matrix model of anabolic and catabolic dynamics during cartilage biomolecule regulation.	Int. J. Comput. Heal.	2012	DBLP DOI BibTeX RDF
27	Mateusz Sikora, Joanna I. Sulkowska, Bartlomiej S. Witkowski, Marek Cieplak	BSDB: the biomolecule stretching database.	Nucleic Acids Res.	2011	DBLP DOI BibTeX RDF
27	Jonathan S. Ellis, Grégoire Herzog, Paul Galvin	Towards biomolecule-based information processing using engineered nanopores.	Nano Commun. Networks	2011	DBLP DOI BibTeX RDF
27	Michael D. Altman, Jaydeep P. Bardhan, Jacob K. White 0001, Bruce Tidor	Accurate solution of multi-region continuum biomolecule electrostatic problems using the linearized Poisson-Boltzmann equation with curved boundary elements.	J. Comput. Chem.	2009	DBLP DOI BibTeX RDF
27	Siyue Li, Xin Chen, Jian Weng 0006, Qiqing Zhang	Biomolecule-assisted synthesis of 3D structure gold nanocrystals in the presence of cystamine dihydrochloride or cysteamine.	VECIMS	2009	DBLP DOI BibTeX RDF
27	Wei Cai, Zhenli Xu, Andrij Baumketner	A new FFT-based algorithm to compute Born radii in the generalized Born theory of biomolecule solvation.	J. Comput. Phys.	2008	DBLP DOI BibTeX RDF
27	Emre Karakoç, Artem Cherkasov, Süleyman Cenk Sahinalp	Novel approaches for small biomolecule classification and structural similarity search.	SIGKDD Explor.	2007	DBLP DOI BibTeX RDF
27	Michael D. Altman, Jaydeep P. Bardhan, Bruce Tidor, Jacob K. White 0001	FFTSVD: A Fast Multiscale Boundary-Element Method Solver Suitable for Bio-MEMS and Biomolecule Simulation.	IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.	2006	DBLP DOI BibTeX RDF
27	Emre Karakoç, Artem Cherkasov, Süleyman Cenk Sahinalp	Distance based algorithms for small biomolecule classification and structural similarity search.	ISMB (Supplement of Bioinformatics)	2006	DBLP DOI BibTeX RDF
27	Ian Craig, James A. D. McLaughlin	SPR and AFM study of engineered biomolecule immobilisation techniques.	EMBC (Supplement)	2006	DBLP DOI BibTeX RDF
27	Jaydeep P. Bardhan	Efficient numerical algorithms for surface formulations of mathematical models for biomolecule analysis and design.		2006	RDF
27	C. Fondrat, Philippe Dessen, P. Le Beux	Principle of codification for quick comparisons with the entire biomolecule databanks and associated programs in FORTRAN 77.	Nucleic Acids Res.	1986	DBLP DOI BibTeX RDF
20	Shih-Hsien Kuo, Bruce Tidor, Jacob White 0001	A meshless, spectrally accurate, integral equation solver for molecular surface electrostatics.	ACM J. Emerg. Technol. Comput. Syst.	2008	DBLP DOI BibTeX RDF	Poisson-Boltzmann equation, meshless, spectral method, integral equation
20	Frank Walsh, Sasitharan Balasubramaniam, Dmitri Botvich, Tatsuya Suda, Tadashi Nakano, Stephen F. Bush, Mícheál Ó Foghlú	Hybrid DNA and Enzyme Based Computing for Address Encoding, Link Switching and Error Correction in Molecular Communication.	NanoNet	2008	DBLP DOI BibTeX RDF	communication protocols, molecular computing, Molecular communication
20	Nicolas Férey, Olivier Delalande, Gilles Grasseau, Marc Baaden	A VR framework for interacting with molecular simulations.	VRST	2008	DBLP DOI BibTeX RDF	VRPN, interactive molecular dynamics, scientific visualisation, haptic feedback, VTK
20	Kwang-Ting (Tim) Cheng	Moore's law meets the life sciences.	IEEE Des. Test Comput.	2007	DBLP DOI BibTeX RDF	labs on chips, CAD, biochips, multimedia designs
20	Krishnendu Chakrabarty, Roland Thewes	Guest Editors' Introduction: Biochips and Integrated Biosensor Platforms.	IEEE Des. Test Comput.	2007	DBLP DOI BibTeX RDF	dielectrophoresis, electrowetting, DNA, microfluidics, biochips, lab on a chip
20	Wenqi Zhao, Guoliang Xu, Chandrajit L. Bajaj	An algebraic spline model of molecular surfaces.	Symposium on Solid and Physical Modeling	2007	DBLP DOI BibTeX RDF	Bernstein-Bezier basis, energetics, polynomial splines, prismatic scaffolds, solvation, error bounds, rate of convergence, molecular surfaces
20	Max H. Garzon, Vinhthuy T. Phan, Sujoy Roy, Andrew Neel	In Search of Optimal Codes for DNA Computing.	DNA	2006	DBLP DOI BibTeX RDF	Word design, encoding data on DNA, fault-tolerant DNA computing, maximal code sets, complex DNA self-assembly, shuffle codes, Gibbs energy
20	Winnie W. M. Lam, Keith C. C. Chan	Structural Data Mining on Secondary Genomic Structure.	BIBE	2005	DBLP DOI BibTeX RDF
20	Max H. Garzon, Vinhthuy T. Phan, Kiran C. Bobba, Raghuver Kontham	Sensitivity and Capacity of Microarray Encodings.	DNA	2005	DBLP DOI BibTeX RDF	h-distance, DNA chips, genomic analysis, classification and discrimination, data mining, fault-tolerant computing, microarrays, Data representation, Gibbs energy
20	Marina Alexandra Lyshevski	Multi-Valued DNA-Based Electronic Nanodevices.	ISMVL	2005	DBLP DOI BibTeX RDF
20	Shantenu Jha, Peter V. Coveney, Matt J. Harvey	SPICE: Simulated Pore Interactive Computing Environment.	SC	2005	DBLP DOI BibTeX RDF
20	Robert L. Bryant, Herbert Edelsbrunner, Patrice Koehl, Michael Levitt	The Area Derivative of a Space-Filling Diagram.	Discret. Comput. Geom.	2004	DBLP DOI BibTeX RDF