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GrowBag graphs for keyword ? (Num. hits/coverage)
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Results
Found 417 publication records. Showing 417 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 104 | Evgeny Gladilin, Sandra Götze, Jose Mateos-Langerak, Roel van Driel, Karl Rohr, Roland Eils |
Stochastical Analysis of Finite Point Sampling of 3D Chromatin Fiber in Interphase Cell Nuclei.  |
BIRD  |
2007 |
DBLP DOI BibTeX RDF |
3D genome structure, chromatin folding, fluorescent in situ hybridization (FISH), confocal laser scanning microscopy (CLSM), finite point sampling, confined random point distribution, Monte-Carlo simulation, stochastical analysis |
| 71 | Siwei Yang, Sandra Götze, Julio Mateos-Langerak, Roel van Driel, Roland Eils, Karl Rohr |
Variability Analysis of the Large-Scale Structure of Interphase Chromatin Fiber Based on Statistical Shape Theory. |
MDA |
2007 |
DBLP DOI BibTeX RDF |
|
| 71 | Siwei Yang, Sandra Götze, Julio Mateos-Langerak, Roel van Driel, Roland Eils, Karl Rohr |
Analyzing the Variability of the 3D Structure of Chromatin Fiber Using Statistical Shape Theory. |
DAGM-Symposium |
2007 |
DBLP DOI BibTeX RDF |
|
| 53 | Mariliis Tark-Dame, Hansjoerg Jerabek, Erik M. M. Manders, Dieter W. Heermann, Roel van Driel |
Depletion of the Chromatin Looping Proteins CTCF and Cohesin Causes Chromatin Compaction: Insight into Chromatin Folding by Polymer Modelling. |
PLoS Comput. Biol. |
2014 |
DBLP DOI BibTeX RDF |
|
| 53 | Rami Mangoubi, Mukund Desai, Nathan Lowry, Paul Sammak |
Performance evaluation of multiresolution texture analysis of stem cell chromatin. |
ISBI |
2008 |
DBLP DOI BibTeX RDF |
|
| 53 | Tomoharu Kiyuna, Akira Saito, Elizabeth Kerr, Wendy A. Bickmore |
Characterization of chromatin texture by contour complexity for cancer cell classification. |
BIBE |
2008 |
DBLP DOI BibTeX RDF |
|
| 51 | Sheila M. Reynolds, Jeff A. Bilmes, William Stafford Noble |
On the Relationship between DNA Periodicity and Local Chromatin Structure. |
RECOMB |
2009 |
DBLP DOI BibTeX RDF |
DNA periodicity, nucleosome, dinucleotide, chromatin |
| 36 | Feng Zhang, Huiyuan Jiao, Yihao Wang, Chen Yang, Linying Li, Zhiming Wang, Ran Tong, Junmei Zhou, Jianfeng Shen, Lingjie Li |
InferLoop: leveraging single-cell chromatin accessibility for the signal of chromatin loop. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 36 | Dongchan Yang, Taesu Chung, Dongsup Kim |
DeepLUCIA: predicting tissue-specific chromatin loops using Deep Learning-based Universal Chromatin Interaction Annotator. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 36 | Siguo Wang, Qinhu Zhang, Ying He, Zhen Cui, Zhen-Hao Guo, Kyungsook Han, De-Shuang Huang |
DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes. |
PLoS Comput. Biol. |
2022 |
DBLP DOI BibTeX RDF |
|
| 36 | David Lamparter, Daniel Marbach, Rico Rueedi, Sven Bergmann, Zoltán Kutalik |
Genome-Wide Association between Transcription Factor Expression and Chromatin Accessibility Reveals Regulators of Chromatin Accessibility. |
PLoS Comput. Biol. |
2017 |
DBLP DOI BibTeX RDF |
|
| 36 | Gamze Gürsoy, Yun Xu, Jie Liang 0002 |
Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model. |
PLoS Comput. Biol. |
2017 |
DBLP DOI BibTeX RDF |
|
| 36 | Xiaowei Xie, Wenbin Ma, Songyang Zhou, Zhenhua Luo, Junfeng Huang, Zhiming Dai, Yuanyan Xiong |
CCSI: a database providing chromatin-chromatin spatial interaction information. |
Database J. Biol. Databases Curation |
2016 |
DBLP DOI BibTeX RDF |
|
| 36 | Charles Girardot |
Déchiffrement de l'activité des séquences cis-régulatrices chez la Drosophile basé sur la localisation des facteurs de transcription et la caractérisation de l'état de la chromatine. (Deciphering enhancer activity in Drosophila based on transcription factor occupancy and chromatin state chromatin state characterization). |
|
2012 |
RDF |
|
| 36 | Eiko Tsuchiya, Tomoki Hosotani, Tokichi Miyakawa |
A mutation in NPS1/STH1, an essential gene encoding a component of a novel chromatin-remodeling complex RSC, alters the chromatin structure of Saccharomyces cerevisiae centromeres. |
Nucleic Acids Res. |
1998 |
DBLP DOI BibTeX RDF |
|
| 36 | Juntao Li, Fajrian Yunus, Zhu Lei, Majid Eshaghi, Jianhua Liu, Karuturi R. Krishna Murthy |
Modeling and Visualizing Heterogeneity of Spatial Patterns of Protein-DNA Interaction from High-Density Chromatin Precipitation Mapping Data. |
ISBRA |
2009 |
DBLP DOI BibTeX RDF |
ChIP-chip, DNA-protein Interaction, Microarray |
| 36 | Vinsensius B. Vega, Yijun Ruan, Wing-Kin Sung |
A Streamlined and Generalized Analysis of Chromatin ImmunoPrecipitation Paired-End diTag Data. |
ICCS (3) |
2008 |
DBLP DOI BibTeX RDF |
|
| 36 | Igor B. Gurevich, Dmitry Murashov |
Method for Early Diagnostics of Lymphatic System Tumors on the Basis of the Analysis of Chromatin Constitution in Cell Nucleus Images. |
ICPR (3) |
2004 |
DBLP DOI BibTeX RDF |
|
| 36 | Yong-su Chae, Soo Jung Kim 0002, Desok Kim |
Screening of Apoptotic Genes by Morphological Analysis of High Throughput Fluorescence Microscopy Images. |
FBIT |
2007 |
DBLP DOI BibTeX RDF |
|
| 36 | Li Wang, Amutha Ramaswamy, Ilya P. Ioshikhes |
Global Dynamics of Nucleosome Arrays: Influence of Variant Histone H2A.Z. |
BIBE |
2005 |
DBLP DOI BibTeX RDF |
|
| 36 | Fuhui Long, Hanchuan Peng, Damir Sudar, David W. Knowles, Sophie Lelièvre |
Cell Phenotype Classification Based on 3D Cell Image Analysis. |
CSB Workshops |
2005 |
DBLP DOI BibTeX RDF |
|
| 36 | Ivan Tanev, Kikuo Yuta |
Implications of Epigenetic Learning Via Modification of Histones on Performance of Genetic Programming. |
GECCO (1) |
2004 |
DBLP DOI BibTeX RDF |
epigenesis, histones, multi-agent system, genetic programming |
| 36 | Edward N. Trifonov |
Poetry and prose of the sequences. |
RECOMB |
2003 |
DBLP DOI BibTeX RDF |
|
| 18 | Siyu Li, Songming Tang, Yunchang Wang, Sijie Li, Yuhang Jia, Shengquan Chen |
Accurate cell type annotation for single-cell chromatin accessibility data via contrastive learning and reference guidance. |
Quant. Biol. |
2024 |
DBLP DOI BibTeX RDF |
|
| 18 | H. M. A. Mohit Chowdhury, Terrance E. Boult, Oluwatosin Oluwadare |
Comparative study on chromatin loop callers using Hi-C data reveals their effectiveness. |
BMC Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 18 | Dahua Xu, Chunrui Zhang, Xiaoman Bi, Jiankai Xu, Shengnan Guo, Peihu Li, Yutong Shen, Jiale Cai, Nihui Zhang, Guanghui Tian, Haifei Zhang, Hong Wang, Qifu Li, Hongyan Jiang, Bo Wang, Xia Li, Yongsheng Li 0001, Kongning Li |
Mapping enhancer and chromatin accessibility landscapes charts the regulatory network of Alzheimer's disease. |
Comput. Biol. Medicine |
2024 |
DBLP DOI BibTeX RDF |
|
| 18 | Pengfei Liang, Hanshuang Li, Chunshen Long, Mingzhu Liu, Jian Zhou, Yongchun Zuo |
Chromatin region binning of gene expression for improving embryo cell subtype identification. |
Comput. Biol. Medicine |
2024 |
DBLP DOI BibTeX RDF |
|
| 18 | Andrea Papale, David Holcman |
Chromatin phase separated nanoregions explored by polymer cross-linker models and reconstructed from single particle trajectories. |
PLoS Comput. Biol. |
2024 |
DBLP DOI BibTeX RDF |
|
| 18 | Simone Bruno, Ruth J. Williams, Domitilla Del Vecchio |
Mathematical analysis of the limiting behaviors of a chromatin modification circuit. |
Math. Control. Signals Syst. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Yan Zhang, Jingwen Zhang, Wei Zhang, Mohan Wang, Shuangqi Wang, Yao Xu, Lun Zhao, Xingwang Li, Guoliang Li 0002 |
Mapping Multi-factor-mediated Chromatin Interactions to Assess Dysregulation of Lung Cancer-related Genes. |
Genom. Proteom. Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Ke Ding, Shanwen Sun, Yang Luo, Chaoyue Long, Jingwen Zhai, Yixiao Zhai, Guohua Wang |
PlantCADB: A Comprehensive Plant Chromatin Accessibility Database. |
Genom. Proteom. Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Liang Wang, Xiaojie Wang, Chunqi Liu, Wei Xu, Weihong Kuang, Qian Bu, Hongchun Li, Ying Zhao, Linhong Jiang, Yaxing Chen, Feng Qin, Shu Li, Qinfan Wei, Xiaocong Liu, Bin Liu, Yuanyuan Chen, Yanping Dai, Hongbo Wang, Jingwei Tian, Gang Cao, Yinglan Zhao, Xiaobo Cen |
Morphine Re-arranges Chromatin Spatial Architecture of Primate Cortical Neurons. |
Genom. Proteom. Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Mateusz Chilinski, Anup Kumar Halder, Dariusz Plewczynski |
Prediction of chromatin looping using deep hybrid learning (DHL). |
Quant. Biol. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Yuanpeng Xiong, Xuan He, Dan Zhao, Tao Jiang 0001, Jianyang Zeng 0001 |
DeepRCI: predicting RNA-chromatin interactions via deep learning with multi-omics data. |
Quant. Biol. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Puyu Liu, Jihang Luo, Na Tan, Chengfang Li, Jieyu Xu, Xiaorong Yang |
Establishing a prognostic model of chromatin modulators and identifying potential drug candidates in renal clear cell patients. |
BMC Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Adam B. Olshen, Mark R. Segal |
Does multi-way, long-range chromatin contact data advance 3D genome reconstruction? |
BMC Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Lindsay Lee, Miao Yu, Xiaoqi Li 0018, Chenxu Zhu, Yanxiao Zhang, Hongyu Yu, Ziyin Chen, Shreya Mishra, Bing Ren, Yun Li, Ming Hu 0001 |
SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single-cell Hi-C data. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Li Liu, Kaiyuan Han, Huimin Sun, Lu Han, Dong Gao 0002, Qilemuge Xi, Lirong Zhang, Hao Lin 0001 |
A comprehensive review of bioinformatics tools for chromatin loop calling. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Andrea Raffo, Jonas Paulsen |
The shape of chromatin: insights from computational recognition of geometric patterns in Hi-C data. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Kai Li, Ping Zhang, Zilin Wang, Wei Shen, Weicheng Sun, Jinsheng Xu, Zi Wen, Li Li 0057 |
iEnhance: a multi-scale spatial projection encoding network for enhancing chromatin interaction data resolution. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Zheng Zhang, Shengquan Chen, Zhixiang Lin |
RefTM: reference-guided topic modeling of single-cell chromatin accessibility data. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Risa Karakida Kawaguchi, Ziqi Tang, Stephan Fischer, Chandana Rajesh, Rohit Tripathy 0001, Peter K. Koo, Jesse A. Gillis |
Learning single-cell chromatin accessibility profiles using meta-analytic marker genes. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Grigory Ryabykh, S. V. Kuznetsov, Y. D. Korostelev, A. I. Sigorskikh, A. A. Zharikova, Andrey A. Mironov |
RNA-Chrom: a manually curated analytical database of RNA-chromatin interactome. |
Database J. Biol. Databases Curation |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | |
Correction to: RNA-Chrom: a manually curated analytical database of RNA-chromatin interactome. |
Database J. Biol. Databases Curation |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Qiangwei Zhou, Sheng Cheng, Shanshan Zheng, Zhenji Wang, Pengpeng Guan, Zhixian Zhu, Xingyu Huang, Cong Zhou, Guoliang Li 0002 |
ChromLoops: a comprehensive database for specific protein-mediated chromatin loops in diverse organisms. |
Nucleic Acids Res. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Yimeng Zhang, Yuexin Zhang, Chao Song, Xilong Zhao, Bo Ai 0001, Yuezhu Wang, Liwei Zhou, Jiang Zhu, Chenchen Feng, Liyan Xu, Qiuyu Wang, Hong Sun, Qiaoli Fang, Xiaozheng Xu, Enmin Li, Chunquan Li 0002 |
CRdb: a comprehensive resource for deciphering chromatin regulators in human. |
Nucleic Acids Res. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Huiling Liu, Wenxiu Ma |
scHiCDiff: detecting differential chromatin interactions in single-cell Hi-C data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | |
Correction to: Continuous chromatin state feature annotation of the human epigenome. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Nolan H. Hamilton, Terrence S. Furey |
ROCCO: a robust method for detection of open chromatin via convex optimization. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Ha Vu, Zane Koch, Petko Fiziev, Jason Ernst |
A framework for group-wise summarization and comparison of chromatin state annotations. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Michal Wlasnowolski, Pawel Z. Grabowski, Damian Roszczyk, Krzysztof Kaczmarski, Dariusz Plewczynski |
cudaMMC: GPU-enhanced multiscale Monte Carlo chromatin 3D modelling. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Shengquan Chen, Rongxiang Wang, Wenxin Long, Rui Jiang |
ASTER: accurately estimating the number of cell types in single-cell chromatin accessibility data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Min Yang, Bo Qiu, Guo-You He, Jian-Yuan Zhou, Hao-Jie Yu, Yu-Ying Zhang, Yan-Shang Li, Tai-Song Li, Jin-Cheng Guo, Xue-Cang Li, Jian-Jun Xie |
eccDB: a comprehensive repository for eccDNA-mediated chromatin contacts in multi-species. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Aman Agarwal, Li Chen |
DeepPHiC: predicting promoter-centered chromatin interactions using a novel deep learning approach. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Neda Shokraneh, Mariam Arab, Maxwell W. Libbrecht |
Integrative chromatin domain annotation through graph embedding of Hi-C data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Chen Li, Xiaoyang Chen, Shengquan Chen, Rui Jiang, Xuegong Zhang |
simCAS: an embedding-based method for simulating single-cell chromatin accessibility sequencing data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Wuwei Tan, Yang Shen |
Multimodal learning of noncoding variant effects using genome sequence and chromatin structure. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | |
Correction to: Prediction of gene co-expression from chromatin contacts with graph attention network. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Pengyu Zhang, Hao Wu 0062 |
IChrom-Deep: An Attention-Based Deep Learning Model for Identifying Chromatin Interactions. |
IEEE J. Biomed. Health Informatics |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Turki Turki, Sanjiban Sekhar Roy, Y-h. Taguchi 0001 |
Optimized Tensor Decomposition and Principal Component Analysis Outperforming State-of-the-Art Methods When Analyzing Histone Modification Chromatin Immunoprecipitation Profiles. |
Algorithms |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Vincenzo Pirrotta |
Chromatin and Epigenetics - An Introduction to Epigenetic Mechanisms |
|
2023 |
DOI RDF |
|
| 18 | Anup Kumar Halder, Abhishek Agarwal, Sevastianos Korsak, Karolina Jodkowska, Dariusz Plewczynski |
ccLoopER: Deep Prediction of CTCF and cohesin Mediated Chromatin looping Using DNA Transformer Model. |
PReMI |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Neda Shokraneh Kenari, Megan Andrews, Max W. Libbrecht |
Model-based imputation enables improved resolution for identifying differential chromatin contacts in single-cell Hi-C data. |
MLCB |
2023 |
DBLP BibTeX RDF |
|
| 18 | Yuhang Liu, Zixuan Wang, Jiaheng Lv, Yongqing Zhang |
DeepChrom: A Diffusion-Based Framework for Long-Tailed Chromatin State Prediction. |
PRCV (3) |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Ahtisham Fazeel Abbasi, Muhammad Nabeel Asim, Johan Trygg, Andreas Dengel 0001, Sheraz Ahmed |
Deep Learning Architectures for the Prediction of YY1-Mediated Chromatin Loops. |
ISBRA |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Gatis Melkus, Sandra Silina, Andrejs Sizovs, Peteris Rucevskis, Lelde Lace, Edgars Celms, Juris Viksna |
Clique-Based Topological Characterization of Chromatin Interaction Hubs. |
ISBRA |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Chanaka Bulathsinghalage, Lu Liu |
scHi-CNN: a Computational Method for Statistically Significant Single-cell Hi-C Chromatin Interactions with Nearest Neighbors. |
BIBM |
2023 |
DBLP DOI BibTeX RDF |
|
| 18 | Thomas Sabaté |
Modeling, visualizing and quantifying chromatin loop extrusion dynamics in living human cells. (Modélisation, visualisation et quantification de la dynamique d'extrusion de boucle de chromatine en cellules humaines vivantes). |
|
2023 |
RDF |
|
| 18 | Qiao Liu, Kui Hua, Xuegong Zhang, Wing Hung Wong, Rui Jiang 0001 |
DeepCAGE: Incorporating Transcription Factors in Genome-wide Prediction of Chromatin Accessibility. |
Genom. Proteom. Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Roozbeh Manshaei, Uzair Mayat, Syeda Aniqa Imtiaz, Veronica Andric, Kazeera Aliar, Nour Abu Hantash, Kashaf Masood, Gabby Resch, Alexander Bakogeorge, Sarah Sabatinos, Ali Mazalek |
Tangible Chromatin: Tangible and Multi-surface Interactions for Exploring Datasets from High-Content Microscopy Experiments. |
Proc. ACM Hum. Comput. Interact. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Nobuko Ohmido, Astari Dwiranti, Seiji Kato, Kiichi Fukui |
Applications of image analysis in plant chromosome and chromatin structure study. |
Quant. Biol. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Modupeore O. Adetunji, Brian J. Abraham |
SEAseq: a portable and cloud-based chromatin occupancy analysis suite. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Mikhail D. Magnitov, Azat K. Garaev, Alexander V. Tyakht, Sergey V. Ulianov, Sergey V. Razin |
Pentad: a tool for distance-dependent analysis of Hi-C interactions within and between chromatin compartments. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Xin Li, Xu Pan, Hanxiao Zhou, Peng Wang 0082, Yue Gao 0004, Shipeng Shang, Shuang Guo 0001, Jie Sun, Zhiying Xiong, Shangwei Ning, Hui Zhi, Xia Li 0004 |
Comprehensive characterization genetic regulation and chromatin landscape of enhancer-associated long non-coding RNAs and their implication in human cancer. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Elias Orouji, Ayush T. Raman |
Computational methods to explore chromatin state dynamics. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Simon Zhongyuan Tian, Guoliang Li 0002, Duo Ning, Kai Jing, Yewen Xu, Yang Yang, Melissa Jane Fullwood, Pengfei Yin, Guangyu Huang, Dariusz Plewczynski, Jixian Zhai, Ziwei Dai, Wei Chen, Meizhen Zheng |
MCIBox: a toolkit for single-molecule multi-way chromatin interaction visualization and micro-domains identification. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Yin Shen, Quan Zhong, Tian Liu, Zi Wen, Wei Shen, Li Li 0057 |
CharID: a two-step model for universal prediction of interactions between chromatin accessible regions. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Jianyuan Zhou, Yanshang Li, Haotian Cao, Min Yang, Lingyu Chu, Taisong Li, Zhengmin Yu, Rui Yu, Bo Qiu, Qiuyu Wang, Xuecang Li, Jianjun Xie |
CATA: a comprehensive chromatin accessibility database for cancer. |
Database J. Biol. Databases Curation |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Katherine Decker, Ye Gao, Kevin Rychel, Tahani Al bulushi, Siddharth M. Chauhan, Donghyuk Kim, Byung-Kwan Cho, Bernhard O. Palsson |
proChIPdb: a chromatin immunoprecipitation database for prokaryotic organisms. |
Nucleic Acids Res. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Barbara Poszewiecka, Victor Murcia Pienkowski, Karol Nowosad, Jérôme D. Robin, Krzysztof Gogolewski, Anna Gambin |
TADeus2: a web server facilitating the clinical diagnosis by pathogenicity assessment of structural variations disarranging 3D chromatin structure. |
Nucleic Acids Res. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Mattia Conte, Andrea Esposito 0001, Luca Fiorillo, Raffaele Campanile, Carlo Annunziatella, Alfonso Corrado, Maria Gabriella Chiariello, Simona Bianco, Andrea Maria Chiariello |
Efficient computational implementation of polymer physics models to explore chromatin structure. |
Int. J. Parallel Emergent Distributed Syst. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Habib Daneshpajouh, Bowen Chen, Neda Shokraneh, Shohre Masoumi, Kay C. Wiese, Maxwell W. Libbrecht |
Continuous chromatin state feature annotation of the human epigenome. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Ke Zhang, Chenxi Wang, Liping Sun, Jie Zheng 0002 |
Prediction of gene co-expression from chromatin contacts with graph attention network. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Elham Jafari, Travis S. Johnson, Yue Wang, Yunlong Liu, Kun Huang, Yijie Wang |
AIscEA: unsupervised integration of single-cell gene expression and chromatin accessibility via their biological consistency. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Pengyu Zhang, Yingfu Wu, Haoru Zhou, Bing Zhou, Hongming Zhang 0002, Hao Wu 0062 |
CLNN-loop: a deep learning model to predict CTCF-mediated chromatin loops in the different cell lines and CTCF-binding sites (CBS) pair types. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Todor Gitchev, Gabriel Zala, Peter Meister, Daniel Jost 0002 |
3DPolyS-LE: an accessible simulation framework to model the interplay between chromatin and loop extrusion. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Xiaoyang Chen, Shengquan Chen, Shuang Song 0006, Zijing Gao, Lin Hou, Xuegong Zhang, Hairong Lv, Rui Jiang 0001 |
Cell type annotation of single-cell chromatin accessibility data via supervised Bayesian embedding. |
Nat. Mach. Intell. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Matús Talcík, Filip Opálený, Tereza Clarence, Katarína Furmanová, Jan Byska, Barbora Kozlíková, David Kouril |
ChromoSkein: Untangling Three-Dimensional Chromatin Fiber With a Web-Based Visualization Framework. |
CoRR |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Mehrdad Zandigohar, Yang Dai |
Information retrieval in single cell chromatin analysis using TF-IDF transformation methods. |
CoRR |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Yikang Zhang, Xiaomin Chu, Yelu Jiang, Hongjie Wu, Lijun Quan |
SemanticCAP: Chromatin Accessibility Prediction Enhanced by Features Learning from a Language Model. |
CoRR |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Yuan Li, Saadia Khilji, Yan Z. Mach, Jihong Chen, Qiao Li |
Chromatin state distribution of residue-specific histone acetylation in early myoblast differentiation. |
J. Big Data |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Yosuke Tanigawa, Ethan Dyer, Gill Bejerano |
WhichTF is functionally important in your open chromatin data? |
PLoS Comput. Biol. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Hamid Alinejad-Rokny, Rassa Ghavami Modegh, Hamid R. Rabiee, Ehsan Ramezani Sarbandi, Narges Rezaie, Kin Tung Tam, Alistair R. R. Forrest |
Correction: MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments. |
PLoS Comput. Biol. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Simone Bruno, Ruth J. Williams, Domitilla Del Vecchio |
Epigenetic cell memory: The gene's inner chromatin modification circuit. |
PLoS Comput. Biol. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Hamid Alinejad-Rokny, Rassa Ghavami Modegh, Hamid R. Rabiee, Ehsan Ramezani Sarbandi, Narges Rezaie, Kin Tung Tam, Alistair R. R. Forrest |
MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments. |
PLoS Comput. Biol. |
2022 |
DBLP DOI BibTeX RDF |
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| 18 | M. Elise Bullock, Nataly Moreno-Martinez, Kathryn Miller-Jensen |
A transcriptional cycling model recapitulates chromatin-dependent features of noisy inducible transcription. |
PLoS Comput. Biol. |
2022 |
DBLP DOI BibTeX RDF |
|
| 18 | Oliver Ocsenas, Jüri Reimand |
Chromatin accessibility of primary human cancers ties regional mutational processes and signatures with tissues of origin. |
PLoS Comput. Biol. |
2022 |
DBLP DOI BibTeX RDF |
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| 18 | Mattia Conte, Andrea Maria Chiariello, Alex Abraham, Simona Bianco, Andrea Esposito 0001, Mario Nicodemi, Tommaso Matteuzzi, Francesca Vercellone |
Polymer Models of Chromatin Imaging Data in Single Cells. |
Algorithms |
2022 |
DBLP DOI BibTeX RDF |
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| 18 | Simone Bruno, Ruth J. Williams, Domitilla Del Vecchio |
Analytical and computational study of the stochastic behavior of a chromatin modification circuit. |
CDC |
2022 |
DBLP DOI BibTeX RDF |
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| 18 | Ukjin Kwon, Hsin-Ho Huang, Domitilla Del Vecchio |
Design of a long-term memory genetic toggle switch inspired by chromatin modification circuits. |
CDC |
2022 |
DBLP DOI BibTeX RDF |
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