Search results for "coalescent"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
158	Yufeng Wu	Exact Computation of Coalescent Likelihood under the Infinite Sites Model.	ISBRA	2009	DBLP DOI BibTeX RDF
113	Zhanshan (Sam) Ma, Axel W. Krings	Survival Analysis Modeling of Phylogenetic and Coalescent Trees.	BMEI (1)	2008	DBLP DOI BibTeX RDF
68	Rune B. Lyngsø, Yun S. Song, Jotun Hein	Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony.	RECOMB	2008	DBLP DOI BibTeX RDF
55	Yun S. Song, Rune B. Lyngsø, Jotun Hein	Counting All Possible Ancestral Configurations of Sample Sequences in Population Genetics.	IEEE ACM Trans. Comput. Biol. Bioinform.	2006	DBLP DOI BibTeX RDF	Ancestral configurations, enumeration, recombination, contingency table, coalescent
45	Sebastian Zöllner, Jonathan K. Pritchard	A Coalescent-Based Approach for Complex Disease Mapping.	Computational Methods for SNPs and Haplotype Inference	2002	DBLP DOI BibTeX RDF
33	Antonina Mitrofanova, Bud Mishra	Population genetics of human copy number variations: models and simulation of their evolution along and across the genomes.	SAC	2008	DBLP DOI BibTeX RDF	copy number variations (CNV), segmental duplications (SD) & coalescent process, population genetics
23	Philippe Gambette, Vincent Berry, Christophe Paul	The Structure of Level-k Phylogenetic Networks.	CPM	2009	DBLP DOI BibTeX RDF
23	Zhijun Yu, Jianming Wei, Haitao Liu 0005	A new adaptive maneuvering target tracking algorithm using artificial neural Networks.	IJCNN	2008	DBLP DOI BibTeX RDF
23	Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nakhleh	Identifiability Issues in Phylogeny-Based Detection of Horizontal Gene Transfer.	Comparative Genomics	2006	DBLP DOI BibTeX RDF
23	Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Lorenzo Mariani	Experimental Analysis of a New Algorithm for Partial Haplotype Completion.	International Conference on Computational Science (2)	2005	DBLP DOI BibTeX RDF
23	Yun S. Song, Yufeng Wu, Dan Gusfield	Algorithms for Imperfect Phylogeny Haplotyping (IPPH) with a Single Homoplasy or Recombination Event.	WABI	2005	DBLP DOI BibTeX RDF
22	Elizabeth S. Allman, Hector Baños, John A. Rhodes	Testing Multispecies Coalescent Simulators Using Summary Statistics.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
22	Brian Johnson, Yubo Shuai, Jason Schweinsberg, Kit Curtius	cloneRate: fast estimation of single-cell clonal dynamics using coalescent theory.	Bioinform.	2023	DBLP DOI BibTeX RDF
22	Lorenzo Cappello, Jaehee Kim, Julia A. Palacios	adaPop: Bayesian inference of dependent population dynamics in coalescent models.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
22	Yasamin Tabatabaee, Sebastien Roch, Tandy J. Warnow	QR-STAR: A Polynomial-Time Statistically Consistent Method for Rooting Species Trees Under the Coalescent.	J. Comput. Biol.	2023	DBLP DOI BibTeX RDF
22	Yasamin Tabatabaee, Sébastien Roch, Tandy J. Warnow	Statistically Consistent Rooting of Species Trees Under the Multispecies Coalescent Model.	RECOMB	2023	DBLP DOI BibTeX RDF
22	Jonathan Klawitter, Felix Klesen, Moritz Niederer, Alexander Wolff 0001	Visualizing Multispecies Coalescent Trees: Drawing Gene Trees Inside Species Trees.	SOFSEM	2023	DBLP DOI BibTeX RDF
22	Nicola Angelo Famiglietti, Zeinab Golshadi, Filippos Vallianatos, Riccardo Caputo, Maria Kouli, Vassilis Sakkas, Simone Atzori, Raffaele Moschillo, Gianpaolo Cecere, Ciriaco D'Ambrosio, Annamaria Vicari	The 2021 Greece Central Crete ML 5.8 Earthquake: An Example of Coalescent Fault Segments Reconstructed from InSAR and GNSS Data.	Remote. Sens.	2022	DBLP DOI BibTeX RDF
22	Mackenzie Simper, Julia A. Palacios	An adjacent-swap Markov chain on coalescent trees.	J. Appl. Probab.	2022	DBLP DOI BibTeX RDF
22	Jing Peng, David L. Swofford, Laura Salter Kubatko	Estimation of speciation times under the multispecies coalescent.	Bioinform.	2022	DBLP DOI BibTeX RDF
22	Jonathan Klawitter, Felix Klesen, Moritz Niederer, Alexander Wolff 0001	Visualizing Multispecies Coalescent Trees: Drawing Gene Trees Inside Species Trees.	CoRR	2022	DBLP DOI BibTeX RDF
22	Prateek, Rajeev Arya 0001	Exploiting perturbed and coalescent anchor node geometry with semidefinite relaxation for sensor network localization.	Phys. Commun.	2022	DBLP DOI BibTeX RDF
22	Fangfang Guo, Ignazio Carbone, David A. Rasmussen	Recombination-aware phylogeographic inference using the structured coalescent with ancestral recombination.	PLoS Comput. Biol.	2022	DBLP DOI BibTeX RDF
22	Egor Alimpiev, Noah A. Rosenberg	Enumeration of coalescent histories for caterpillar species trees and p-pseudocaterpillar gene trees.	Adv. Appl. Math.	2021	DBLP DOI BibTeX RDF
22	Jordan Douglas	UglyTrees: a browser-based multispecies coalescent tree visualizer.	Bioinform.	2021	DBLP DOI BibTeX RDF
22	Ruoyi Cai, Cécile Ané	Assessing the fit of the multi-species network coalescent to multi-locus data.	Bioinform.	2021	DBLP DOI BibTeX RDF
22	John A. Rhodes, Hector Baños, Jonathan D. Mitchell, Elizabeth S. Allman	MSCquartets 1.0: quartet methods for species trees and networks under the multispecies coalescent model in R.	Bioinform.	2021	DBLP DOI BibTeX RDF
22	Kyle C. Hale	Coalescent Computing.	CoRR	2021	DBLP BibTeX RDF
22	Lena Collienne, Kieran Elmes, Mareike Fischer 0001, David Bryant, Alex Gavryushkin	The Geometry of the space of Discrete Coalescent Trees.	CoRR	2021	DBLP BibTeX RDF
22	Kyle C. Hale	Coalescent computing.	APSys	2021	DBLP DOI BibTeX RDF
22	Zoe M. Himwich, Noah A. Rosenberg	Roadblocked monotonic paths and the enumeration of coalescent histories for non-matching caterpillar gene trees and species trees.	Adv. Appl. Math.	2020	DBLP DOI BibTeX RDF
22	Yufeng Wu	Inference of population admixture network from local gene genealogies: a coalescent-based maximum likelihood approach.	Bioinform.	2020	DBLP DOI BibTeX RDF
22	Jakub Truszkowski, Céline Scornavacca, Fabio Pardi	Computing the probability of gene trees concordant with the species tree in the multispecies coalescent.	CoRR	2020	DBLP BibTeX RDF
22	Bianka Kovács, Gergely Palla	Optimisation of the coalescent hyperbolic embedding of complex networks.	CoRR	2020	DBLP BibTeX RDF
22	Jacopo Borga, Mickaël Maazoun	Scaling and Local Limits of Baxter Permutations Through Coalescent-Walk Processes.	AofA	2020	DBLP DOI BibTeX RDF
22	Miguel Arenas	Applications of the Coalescent for the Evolutionary Analysis of Genetic Data.	Encyclopedia of Bioinformatics and Computational Biology (2)	2019	DBLP DOI BibTeX RDF
22	Elizabeth S. Allman, Hector Baños, John A. Rhodes	NANUQ: a method for inferring species networks from gene trees under the coalescent model.	Algorithms Mol. Biol.	2019	DBLP DOI BibTeX RDF
22	Ki-Hok Liao, Wing-Kai Hon, Chuan Yi Tang, Wen-Ping Hsieh	MetaSMC: a coalescent-based shotgun sequence simulator for evolving microbial populations.	Bioinform.	2019	DBLP DOI BibTeX RDF
22	Jean-François Marckert, Minmin Wang	A new combinatorial representation of the additive coalescent.	Random Struct. Algorithms	2019	DBLP DOI BibTeX RDF
22	Qiqige Wuyun, Nicholas W. VanKuren, Marcus Kronforst, Sean P. Mullen, Kevin J. Liu	Scalable Statistical Introgression Mapping Using Approximate Coalescent-Based Inference.	BCB	2019	DBLP DOI BibTeX RDF
22	Qiqige Wuyun, Nicholas W. VanKuren, Marcus Kronforst, Sean P. Mullen, Kevin J. Liu	Scalable Statistical Introgression Mapping Using Approximate Coalescent-Based Inference.	BCB	2019	DBLP DOI BibTeX RDF
22	Nicola F. Müller, David A. Rasmussen, Tanja Stadler	MASCOT: parameter and state inference under the marginal structured coalescent approximation.	Bioinform.	2018	DBLP DOI BibTeX RDF
22	Sebastien Roch	On the variance of internode distance under the multispecies coalescent.	CoRR	2018	DBLP BibTeX RDF
22	Sébastien Roch	On the Variance of Internode Distance Under the Multispecies Coalescent.	RECOMB-CG	2018	DBLP DOI BibTeX RDF
22	Oyetunji E. Ogundijo, Xiaodong Wang 0001	Bayesian estimation of scaled mutation rate under the coalescent: a sequential Monte Carlo approach.	BMC Bioinform.	2017	DBLP DOI BibTeX RDF
22	Jingwen Pei, Yufeng Wu	STELLS2: fast and accurate coalescent-based maximum likelihood inference of species trees from gene tree topologies.	Bioinform.	2017	DBLP DOI BibTeX RDF
22	Gautam Dasarathy, Elchanan Mossel, Robert D. Nowak, Sebastien Roch	Coalescent-based species tree estimation: a stochastic Farris transform.	CoRR	2017	DBLP BibTeX RDF
22	Michael Nute, Jed Chou	Statistical Consistency of Coalescent-Based Species Tree Methods Under Models of Missing Data.	RECOMB-CG	2017	DBLP DOI BibTeX RDF
22	Philip E. Davis, Adam M. Terwilliger, David Zeitler, Gregory Wolffe	Scalable Parallelization of a Markov Coalescent Genealogy Sampler.	IPDPS Workshops	2017	DBLP DOI BibTeX RDF
22	Hussein A. Hejase, Kevin J. Liu	Mapping the genomic architecture of adaptive traits with interspecific introgressive origin: a coalescent-based approach.	BMC Genom.	2016	DBLP DOI BibTeX RDF
22	Filippo Disanto, Noah A. Rosenberg	Asymptotic Properties of the Number of Matching Coalescent Histories for Caterpillar-Like Families of Species Trees.	IEEE ACM Trans. Comput. Biol. Bioinform.	2016	DBLP DOI BibTeX RDF
22	Ryouta Kozakai, Akinobu Shimizu, Morihiro Notohara	Convergence to the structured coalescent process.	J. Appl. Probab.	2016	DBLP DOI BibTeX RDF
22	Paul R. Staab, Dirk Metzler	Coala: an R framework for coalescent simulation.	Bioinform.	2016	DBLP DOI BibTeX RDF
22	Yufeng Wu	An algorithm for computing the gene tree probability under the multispecies coalescent and its application in the inference of population tree.	Bioinform.	2016	DBLP DOI BibTeX RDF
22	Andrew D. Kern, Daniel R. Schrider	Discoal: flexible coalescent simulations with selection.	Bioinform.	2016	DBLP DOI BibTeX RDF
22	Benjamin Hellouin de Menibus, Mathieu Sablik	Self-organisation in cellular automata with coalescent particles: Qualitative and quantitative approaches.	CoRR	2016	DBLP BibTeX RDF
22	Nicola De Maio, Chieh-Hsi Wu, Daniel J. Wilson	SCOTTI: Efficient Reconstruction of Transmission within Outbreaks with the Structured Coalescent.	PLoS Comput. Biol.	2016	DBLP DOI BibTeX RDF
22	Jerome Kelleher, Alison M. Etheridge, Gilean McVean	Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes.	PLoS Comput. Biol.	2016	DBLP DOI BibTeX RDF
22	Amaury Lambert, Chunhua Ma	The Coalescent in Peripatric Metapopulations.	J. Appl. Probab.	2015	DBLP DOI BibTeX RDF
22	Jere Koskela, Paul A. Jenkins, Dario Spanò	Computational Inference Beyond Kingman's Coalescent.	J. Appl. Probab.	2015	DBLP DOI BibTeX RDF
22	Graham Jones, Zeynep Aydin, Bengt Oxelman	DISSECT: an assignment-free Bayesian discovery method for species delimitation under the multispecies coalescent.	Bioinform.	2015	DBLP DOI BibTeX RDF
22	Yufeng Wu	A coalescent-based method for population tree inference with haplotypes.	Bioinform.	2015	DBLP DOI BibTeX RDF
22	Paul R. Staab, Sha Zhu, Dirk Metzler, Gerton Lunter	scrm: efficiently simulating long sequences using the approximated coalescent with recombination.	Bioinform.	2015	DBLP DOI BibTeX RDF
22	Siavash Mirarab, Tandy J. Warnow	ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes.	Bioinform.	2015	DBLP DOI BibTeX RDF
22	Shiwei Lan, Julia A. Palacios, Michael D. Karcher, Vladimir N. Minin, Babak Shahbaba	An efficient Bayesian inference framework for coalescent-based nonparametric phylodynamics.	Bioinform.	2015	DBLP DOI BibTeX RDF
22	Elchanan Mossel, Sébastien Roch	Distance-based species tree estimation: information-theoretic trade-off between number of loci and sequence length under the coalescent.	CoRR	2015	DBLP BibTeX RDF
22	Shankar Bhamidi, Amarjit Budhiraja, Xuan Wang	Aggregation models with limited choice and the multiplicative coalescent.	Random Struct. Algorithms	2015	DBLP DOI BibTeX RDF
22	Filippo Disanto, Noah A. Rosenberg	Coalescent Histories for Lodgepole Species Trees.	J. Comput. Biol.	2015	DBLP DOI BibTeX RDF
22	Elchanan Mossel, Sébastien Roch	Distance-based Species Tree Estimation: Information-Theoretic Trade-off between Number of Loci and Sequence Length under the Coalescent.	APPROX-RANDOM	2015	DBLP DOI BibTeX RDF
22	Maria Kabisch	Imputation of missing genotypes in genetic studies through generalizations of the basic coalescent.		2015	RDF
22	Tao Yang, Hong-Wen Deng, Tianhua Niu	Critical assessment of coalescent simulators in modeling recombination hotspots in genomic sequences.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
22	Ying Wang, Ying Zhou, Linfeng Li, Xian Chen, Yuting Liu, Zhiming Ma, Shuhua Xu	A New Method for Modeling Coalescent Processes with Recombination.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
22	Martin Möhle	Asymptotic hitting probabilities for the Bolthausen-Sznitman coalescent.	J. Appl. Probab.	2014	DBLP DOI BibTeX RDF
22	Fabian Freund, Arno Siri-Jégousse	Minimal Clade Size in the Bolthausen-Sznitman Coalescent.	J. Appl. Probab.	2014	DBLP DOI BibTeX RDF
22	Götz Kersting, Juan Carlos Pardo, Arno Siri-Jégousse	Total internal and external lengths of the Bolthausen-Sznitman coalescent.	J. Appl. Probab.	2014	DBLP DOI BibTeX RDF
22	Arindam Roychoudhury	Identifiability of a Coalescent-Based Population Tree Model.	J. Appl. Probab.	2014	DBLP DOI BibTeX RDF
22	Siavash Mirarab, Rezwana Reaz, Md. Shamsuzzoha Bayzid, Théo Zimmermann, M. Shel Swenson, Tandy J. Warnow	ASTRAL: genome-scale coalescent-based species tree estimation.	Bioinform.	2014	DBLP DOI BibTeX RDF
22	Timothy G. Vaughan, Denise Kühnert, Alex Popinga, David Welch 0003, Alexei J. Drummond	Efficient Bayesian inference under the structured coalescent.	Bioinform.	2014	DBLP DOI BibTeX RDF
22	Ilya Shlyakhter, Pardis C. Sabeti, Stephen F. Schaffner	Cosi2: an efficient simulator of exact and approximate coalescent with selection.	Bioinform.	2014	DBLP DOI BibTeX RDF
22	Julia Chifman, Laura Salter Kubatko	Quartet Inference from SNP Data Under the Coalescent Model.	Bioinform.	2014	DBLP DOI BibTeX RDF
22	Nicolas Broutin, Jean-François Marckert	A new encoding of coalescent processes. Applications to the additive and multiplicative cases.	CoRR	2014	DBLP BibTeX RDF
22	Veronika Boskova, Sebastian Bonhoeffer, Tanja Stadler	Inference of Epidemiological Dynamics Based on Simulated Phylogenies Using Birth-Death and Coalescent Models.	PLoS Comput. Biol.	2014	DBLP DOI BibTeX RDF
22	Kelley Harris, Sara Sheehan, John A. Kamm, Yun S. Song	Decoding Coalescent Hidden Markov Models in Linear Time.	RECOMB	2014	DBLP DOI BibTeX RDF
22	Ming-Chi Tsai, Guy E. Blelloch, R. Ravi 0001, Russell Schwartz	Coalescent-Based Method for Learning Parameters of Admixture Events from Large-Scale Genetic Variation Data.	IEEE ACM Trans. Comput. Biol. Bioinform.	2013	DBLP DOI BibTeX RDF
22	Noah A. Rosenberg	Coalescent Histories for Caterpillar-Like Families.	IEEE ACM Trans. Comput. Biol. Bioinform.	2013	DBLP DOI BibTeX RDF
22	Romain Abraham, Jean-François Delmas	A Construction of a β-Coalescent via the Pruning of Binary Trees.	J. Appl. Probab.	2013	DBLP DOI BibTeX RDF
22	Jerome Kelleher, Nicholas H. Barton, Alison M. Etheridge	Coalescent simulation in continuous space.	Bioinform.	2013	DBLP DOI BibTeX RDF
22	Haipeng Li, Thomas Wiehe	Coalescent Tree Imbalance and a Simple Test for Selective Sweeps Based on Microsatellite Variation.	PLoS Comput. Biol.	2013	DBLP DOI BibTeX RDF
22	Sébastien Roch	An Analytical Comparison of Multilocus Methods Under the Multispecies Coalescent: The Three-Taxon Case.	Pacific Symposium on Biocomputing	2013	DBLP BibTeX RDF
22	Carlos Montemuiño, Antonio Espinosa, Juan Carlos Moure, Gonzalo Vera-Rodríguez, Sebastián Ramos-Onsins, Porfidio Hernández Budé	msPar: A Parallel Coalescent Simulator.	Euro-Par Workshops	2013	DBLP DOI BibTeX RDF
22	Yuening Hu, Jordan L. Boyd-Graber, Hal Daumé III, Z. Irene Ying	Binary to Bushy: Bayesian Hierarchical Clustering with the Beta Coalescent.	NIPS	2013	DBLP BibTeX RDF
22	Bram Vrancken, Andrew Rambaut, Guy Baele, Anne-Mieke Vandamme, Kristel Van Laethem, Eric Van Wijngaerden, Alexei J. Drummond, Marc A. Suchard, Philippe Lemey	Reconstruction of an HIV Transmission History in a Bayesian Coalescent Framework.	IWBBIO	2013	DBLP BibTeX RDF
22	Dilan Görür, Levi Boyles, Max Welling	Scalable Inference on Kingman's Coalescent using Pair Similarity .	AISTATS	2012	DBLP BibTeX RDF
22	Susanta Tewari, John L. Spouge	Software: an open-source and scalable framework for exact calculations in coalescent theory.	BMC Bioinform.	2012	DBLP DOI BibTeX RDF
22	Mark Reppell, Michael Boehnke, Sebastian Zöllner	FTEC: a coalescent simulator for modeling faster than exponential growth.	Bioinform.	2012	DBLP DOI BibTeX RDF
22	Chul Joo Kang, Paul Marjoram	Exact coalescent simulation of new haplotype data from existing reference haplotypes.	Bioinform.	2012	DBLP DOI BibTeX RDF
22	Sebastien Roch	An analytical comparison of coalescent-based multilocus methods: The three-taxon case	CoRR	2012	DBLP BibTeX RDF
22	Olivier David, Catherine Larédo, Raphaël Leblois, Brigitte Schaeffer, Nicolas Vergne	Coalescent-Based DNA Barcoding: Multilocus Analysis and Robustness.	J. Comput. Biol.	2012	DBLP DOI BibTeX RDF
22	Ioanna Manolopoulou, Brent C. Emerson	Phylogeographic Ancestral Inference Using the Coalescent Model on Haplotype Trees.	J. Comput. Biol.	2012	DBLP DOI BibTeX RDF
22	Thomas Mailund, Anders E. Halager, Michael Westergaard	Using Colored Petri Nets to Construct Coalescent Hidden Markov Models: Automatic Translation from Demographic Specifications to Efficient Inference Methods.	Petri Nets	2012	DBLP DOI BibTeX RDF