Search results for "dinucleotide"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
107	Sheila M. Reynolds, Jeff A. Bilmes, William Stafford Noble	On the Relationship between DNA Periodicity and Local Chromatin Structure.	RECOMB	2009	DBLP DOI BibTeX RDF	DNA periodicity, nucleosome, dinucleotide, chromatin
107	Peter F. Arndt, Christopher B. Burge, Terence Hwa	DNA sequence evolution with neighbor-dependent mutation.	RECOMB	2002	DBLP DOI BibTeX RDF	CpG-methylation-deamination, DNA sequence evolution, single-and dinucleotide frequencies
78	Robert H. Baran, Changwon Jeon, David K. Han, Hanseok Ko	More powerful discriminants for classifying phylogenetic signals in dinucleotide frequencies.	ICASSP	2008	DBLP DOI BibTeX RDF
53	Jin-Wu Nam, In-Hee Lee, Kyu Baek Hwang, Seong-Bae Park, Byoung-Tak Zhang	Dinucleotide Step Parameterization of Pre-miRNAs Using Multi-objective Evolutionary Algorithms.	EvoBIO	2007	DBLP DOI BibTeX RDF
31	Krishna M. Roskin, Mark Diekhans, David Haussler	Scoring two-species local alignments to try to statistically separate neutrally evolving from selected DNA segments.	RECOMB	2003	DBLP DOI BibTeX RDF	CpG effect, ancestral repeat, context-dependent base substitutions, dinucleotide dependence, fraction of human genome under selection, mouse-human alignments, neutral evolution, mutual information, comparative genomics, evolutionary models
27	Wang Guo, Xingmou Liu, You Ma, Rongjie Zhang	iRspot-DCC: Recombination hot/ cold spots identification based on dinucleotide-based correlation coefficient and convolutional neural network.	J. Intell. Fuzzy Syst.	2021	DBLP DOI BibTeX RDF
27	Zhibin Lv, Hui Ding 0005, Lei Wang, Quan Zou 0001	A Convolutional Neural Network Using Dinucleotide One-hot Encoder for identifying DNA N6-Methyladenine Sites in the Rice Genome.	Neurocomputing	2021	DBLP DOI BibTeX RDF
27	Gciniwe S. Dlamini, Stephanie J. Müller, Rebone L. Meraba, Richard A. Young, James Mashiyane, Tapiwa M. Chiwewe, Darlington S. Mapiye	Classification of COVID-19 and Other Pathogenic Sequences: A Dinucleotide Frequency and Machine Learning Approach.	IEEE Access	2020	DBLP DOI BibTeX RDF
27	Kartheek Pitta, Marimuthu Krishnan	Molecular Mechanism, Dynamics, and Energetics of Protein-Mediated Dinucleotide Flipping in a Mismatched DNA: A Computational Study of the RAD4-DNA Complex.	J. Chem. Inf. Model.	2018	DBLP DOI BibTeX RDF
27	Saeed Omidi, Mihaela Zavolan, Mikhail Pachkov, Jeremie Breda, Severin Berger, Erik van Nimwegen	Automated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensors.	PLoS Comput. Biol.	2017	DBLP DOI BibTeX RDF
27	Uddalak Mitra, Balaram Bhattacharyya	Classification of Vector-Borne Virus Through Totally Ordered Set of Dinucleotide Interval Patterns.	PReMI	2017	DBLP DOI BibTeX RDF
27	Junbai Wang	Quality versus accuracy: result of a reanalysis of protein-binding microarrays from the DREAM5 challenge by using BayesPI2 including dinucleotide interdependence.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
27	Xing Huang, Jiajun Wang, Hong Yan 0001	Genome-wide nucleosome detection based on the dinucleotide position frequencies.	Int. J. Data Min. Bioinform.	2014	DBLP DOI BibTeX RDF
27	Ivan V. Kulakovskiy, Victor G. Levitsky, Dmitry G. Oschepkov, Ilya E. Vorontsov, Vsevolod J. Makeev	Learning Advanced TFBS Models from Chip-Seq Data - diChIPMunk: Effective Construction of Dinucleotide Positional Weight Matrices.	BIOINFORMATICS	2013	DBLP BibTeX RDF
27	Heiner Klingenberg, Robin Martinjak, Frank Oliver Glöckner, Rolf Daniel, Thomas Lingner, Peter Meinicke	Dinucleotide distance histograms for fast detection of rRNA in metatranscriptomic sequences.	GCB	2013	DBLP DOI BibTeX RDF
27	Michael Fernández, Yutaro Kumagai, Daron M. Standley, Akinori Sarai, Kenji Mizuguchi, Shandar Ahmad	Prediction of dinucleotide-specific RNA-binding sites in proteins.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
27	Carlos A. C. Bastos, Vera Afreixo, Armando J. Pinho, Sara P. Garcia, João M. O. S. Rodrigues, Paulo Jorge S. G. Ferreira	Inter-dinucleotide distances in the human genome: an analysis of the whole-genome and protein-coding distributions.	J. Integr. Bioinform.	2011	DBLP DOI BibTeX RDF
27	Maik Friedel, Swetlana Nikolajewa, Jürgen Sühnel, Thomas Wilhelm 0003	DiProDB: a database for dinucleotide properties.	Nucleic Acids Res.	2009	DBLP DOI BibTeX RDF
27	Maik Friedel, Swetlana Nikolajewa, Jürgen Sühnel, Thomas Wilhelm 0003	DiProGB: the dinucleotide properties genome browser.	Bioinform.	2009	DBLP DOI BibTeX RDF
27	Reid F. Thompson, Masako Suzuki, Kevin W. Lau, John M. Greally	A pipeline for the quantitative analysis of CG dinucleotide methylation using mass spectrometry.	Bioinform.	2009	DBLP DOI BibTeX RDF
27	Parvez Anandam, Elfar Torarinsson, Walter L. Ruzzo	Multiperm: shuffling multiple sequence alignments while approximately preserving dinucleotide frequencies.	Bioinform.	2009	DBLP DOI BibTeX RDF
27	Wei You, Kun Wang, Huixiao Li, Yang Jia, Xiaoqin Wu, Yaning Du	Classification of DNA Sequences Basing on the Dinucleotide Compositions.	ISCID (2)	2009	DBLP DOI BibTeX RDF
27	Raad Z. Gharaibeh, Anthony Fodor, Cynthia Gibas	Background correction using dinucleotide affinities improves the performance of GCRMA.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
27	Tanja Gesell, Stefan Washietl	Dinucleotide controlled null models for comparative RNA gene prediction.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
27	T. Sobha Rani, Raju S. Bapi	Cascaded Multi-level Promoter Recognition of E. coli Using Dinucleotide Features.	ICIT	2008	DBLP DOI BibTeX RDF
27	Peng Jiang, Haonan Wu, Jiawei Wei, Fei Sang, Xiao Sun 0006, Zuhong Lu	RF-DYMHC: detecting the yeast meiotic recombination hotspots and coldspots by random forest model using gapped dinucleotide composition features.	Nucleic Acids Res.	2007	DBLP DOI BibTeX RDF
27	T. Sobha Rani, S. Durga Bhavani, Raju S. Bapi	Analysis of E.coli promoter recognition problem in dinucleotide feature space.	Bioinform.	2007	DBLP DOI BibTeX RDF
27	Sunil Ojha, Elaine C. Meng, Patricia C. Babbitt	Evolution of Function in the "Two Dinucleotide Binding Domains" Flavoproteins.	PLoS Comput. Biol.	2007	DBLP DOI BibTeX RDF
27	Ashok Reddy Dinasarapu, B. V. L. S. Prasad, Chanchal K. Mitra	Comparative analysis of core promoter region: Information content from mono and dinucleotide substitution matrices.	Comput. Biol. Chem.	2006	DBLP DOI BibTeX RDF
27	T. Sobha Rani, S. Durga Bhavani, Raju S. Bapi	Promoter Recognition using dinucleotide Features : A Case Study for E.Coli.	ICIT	2006	DBLP DOI BibTeX RDF
27	Antoine H. C. van Kampen, Mischa L. M. Beckers, Lutgarde M. C. Buydens	A Comparative Study of the DG-OMEGA (DG), DGII, and GAT Method for the Structure Elucidation of a Methylene-acetal Linked Thymine Dinucleotide.	Comput. Chem.	1997	DBLP DOI BibTeX RDF
27	S. Todd, S. L. Naylor	Dinucleotide repeat polymorphism in the human surfactant-associated protein 3 gene (SFTP3).	Nucleic Acids Res.	1991	DBLP DOI BibTeX RDF
27	S. Todd, S. L. Naylor	Dinucleotide repeat polymorphism in the human tubulin alpha 1 (testis specific) gene (TUBA1).	Nucleic Acids Res.	1991	DBLP DOI BibTeX RDF
27	M. H. Polymeropoulos, H. Xiao, D. S. Rath, C. R. Merril	Dinucleotide repeat polymorphism at the human non-histone chromosomal protein HMG14 gene.	Nucleic Acids Res.	1991	DBLP DOI BibTeX RDF
27	I. Brukner, V. Jurukovski, M. Konstantinovic, A. Savic	Curved DNA without AA/TT dinucleotide step.	Nucleic Acids Res.	1991	DBLP DOI BibTeX RDF
27	J. L. Weber, Anne E. Kwitek, P. E. May	Dinucleotide repeat polymorphisms at the D5S107, D5S108, D5S111, D5S117 and D5S118 loci.	Nucleic Acids Res.	1990	DBLP DOI BibTeX RDF
27	James L. Weber, Anne E. Kwitek, Paula E. May, David Patterson, Harold J. Drabkin	Dinucleotide repeat polymorphisms at the D8S85, D8S87, and D8S88 loci.	Nucleic Acids Res.	1990	DBLP DOI BibTeX RDF
27	J. L. Weber, Anne E. Kwitek, P. E. May	Dinucleotide repeat polymorphisms at the D7S435 and D7S440 loci.	Nucleic Acids Res.	1990	DBLP DOI BibTeX RDF
27	J. L. Weber, Anne E. Kwitek, P. E. May	Dinucleotide repeat polymorphisms at the D16S260, D16S261, D16S265, D16S266, and D16S267 loci.	Nucleic Acids Res.	1990	DBLP DOI BibTeX RDF
27	J. L. Weber, Anne E. Kwitek, P. E. May, M. H. Polymeropoulos, S. Ledbetter	Dinucleotide repeat polymorphisms at the DXS453, DXS454 and DXS458 loci.	Nucleic Acids Res.	1990	DBLP DOI BibTeX RDF
27	J. L. Weber, Anne E. Kwitek, P. E. May	Dinucleotide repeat polymorphisms at the D11S419 and CD3D loci.	Nucleic Acids Res.	1990	DBLP DOI BibTeX RDF
27	Bernard Lescure, Valérie Williamson, André Sentenac	Efficient and selective initiation by yeast RNA polymerase B in a dinucleotide-primed reaction.	Nucleic Acids Res.	1981	DBLP DOI BibTeX RDF
25	Chon-Kit Kenneth Chan, Arthur L. Hsu, Sen-Lin Tang, Saman K. Halgamuge	A Method for Evaluating Quality of Clustering DNA Fragments Encoded in Different Nucleotide Frequencies.	FBIT	2007	DBLP DOI BibTeX RDF