Search results for "duplications"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
105	Crystal L. Kahn, Shay Mozes, Benjamin J. Raphael	Efficient Algorithms for Analyzing Segmental Duplications, Deletions, and Inversions in Genomes.	WABI	2009	DBLP DOI BibTeX RDF
77	Hui Liu 0003, Zhiyi Ma, Lu Zhang 0023, Weizhong Shao	Detecting Duplications in Sequence Diagrams Based on Suffix Trees.	APSEC	2006	DBLP DOI BibTeX RDF
69	Cédric Chauve, Nadia El-Mabrouk	New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with Supertrees.	RECOMB	2009	DBLP DOI BibTeX RDF
69	Evan E. Eichler	Recent duplication, evolution and assembly of the human genome.	RECOMB	2002	DBLP DOI BibTeX RDF
63	Qian Peng, Max A. Alekseyev, Glenn Tesler, Pavel A. Pevzner	Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes.	WABI	2009	DBLP DOI BibTeX RDF
57	Krister M. Swenson, Mark Marron, Joel V. Earnest-DeYoung, Bernard M. E. Moret	Approximating the true evolutionary distance between two genomes.	ACM J. Exp. Algorithmics	2008	DBLP DOI BibTeX RDF	pairwise distances, whole-genome data, Evolution, inversions, duplications
57	Jijun Tang, Bernard M. E. Moret	Phylogenetic Reconstruction from Gene-Rearrangement Data with Unequal Gene Content.	WADS	2003	DBLP DOI BibTeX RDF	gene-order data, whole-genome data, Hannenhalli-Pevzner theory, inversion distance, reversal distance, experimental assessment, lower bounds, Computational biology, edit distance, gene duplications, phylogenetic reconstruction, signed permutations
55	Michael T. Hallett, Jens Lagergren	New algorithms for the duplication-loss model.	RECOMB	2000	DBLP DOI BibTeX RDF
50	Christian Ledergerber, Christophe Dessimoz	Alignments with non-overlapping moves, inversions and tandem duplications in O ( n 4) time.	J. Comb. Optim.	2008	DBLP DOI BibTeX RDF	String to string comparison, Block operations, Scoring schemes, Dynamic programming, Biological sequence alignment
50	Christian Ledergerber, Christophe Dessimoz	Alignments with Non-overlapping Moves, Inversions and Tandem Duplications in O ( n 4) Time.	COCOON	2007	DBLP DOI BibTeX RDF
50	Michael Sammeth, Jens Stoye	Comparing Tandem Repeats with Duplications and Excisions of Variable Degree.	IEEE ACM Trans. Comput. Biol. Bioinform.	2006	DBLP DOI BibTeX RDF	variable number of tandem repeats, repeat duplication history, pairwise alignment, dynamic programming, Sequence comparison, tandem repeats
50	Michael T. Hallett, Jens Lagergren, Ali Tofigh	Simultaneous identification of duplications and lateral transfers.	RECOMB	2004	DBLP DOI BibTeX RDF	gene loss, lateral gene transfer, gene duplication
50	Luping Liang, Gerald W. Neufeld, Samuel T. Chanson	Avoiding Name Resolution Loops and Duplications in Group Communications.	SIGCOMM	1990	DBLP DOI BibTeX RDF
44	Binhai Zhu	Tandem Duplications, Segmental Duplications and Deletions, and Their Applications.	CSR	2020	DBLP DOI BibTeX RDF
44	Da-Jung Cho, Yo-Sub Han, Hwee Kim, Alexandros Palioudakis, Kai Salomaa	Duplications and Pseudo-Duplications.	Int. J. Unconv. Comput.	2016	DBLP BibTeX RDF
44	Da-Jung Cho, Yo-Sub Han, Hwee Kim, Alexandros Palioudakis, Kai Salomaa	Duplications and Pseudo-Duplications.	UCNC	2015	DBLP DOI BibTeX RDF
44	Annelyse Thévenin	Aspects algorithmiques des réarrangements génomiques : duplications et ordres partiels. (Algorithmic Aspects of Genome Rearrangements: Duplications and Partial Orders).		2009	RDF
41	Li Xiao 0001, Xiaodong Zhang 0001, Artur Andrzejak 0001, Songqing Chen	Building a Large and Efficient Hybrid Peer-to-Peer Internet Caching System.	IEEE Trans. Knowl. Data Eng.	2004	DBLP DOI BibTeX RDF	browser caching, communication anonymity, data integrity, peer-to-peer systems, proxy caching, Internet systems
41	Shin-Ichi Nakano	Enumerating Floorplans with n Rooms.	ISAAC	2001	DBLP DOI BibTeX RDF	Graphs, Enumeration, Listing, Plane graphs
41	Zhangjian Li, Shin-Ichi Nakano	Efficient Generation of Plane Triangulations without Repetitions.	ICALP	2001	DBLP DOI BibTeX RDF
41	Shin-Ichi Nakano	Efficient Generation of Triconnected Plane Triangulations.	COCOON	2001	DBLP DOI BibTeX RDF
36	Minmei Hou, Cathy Riemer, Piotr Berman, Ross C. Hardison, Webb Miller	Aligning Two Genomic Sequences That Contain Duplications.	RECOMB-CG	2009	DBLP DOI BibTeX RDF
36	Jian Ma 0004, Aakrosh Ratan, Louxin Zhang, Webb Miller, David Haussler	A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications.	RECOMB-CG	2007	DBLP DOI BibTeX RDF	gene order reconstruction, contiguous ancestral region, duplication
36	Hong Liu, Li Li, Asher Zilberstein, Chang S. Hahn	Segmental Duplications Containing Tandem Repeated Genes Encoding Putative Deubiquitinating Enzymes.	CSB	2004	DBLP DOI BibTeX RDF	segmental duplication, deubiquitinating enzyme
36	Kevin C. Chen, Dannie Durand, Martin Farach-Colton	Notung: dating gene duplications using gene family trees.	RECOMB	2000	DBLP DOI BibTeX RDF
29	Antonina Mitrofanova, Bud Mishra	Population genetics of human copy number variations: models and simulation of their evolution along and across the genomes.	SAC	2008	DBLP DOI BibTeX RDF	copy number variations (CNV), segmental duplications (SD) & coalescent process, population genetics
29	Graham M. Megson	A Fast Faddeev Array.	IEEE Trans. Computers	1992	DBLP DOI BibTeX RDF	fast Faddeev array, Faddeev algorithm, inner product steps, half-arrays, triangularizations, on-the-fly decoupling, pivot row data, nearest neighbor connections, parallel algorithms, computational complexity, systolic array, systolic arrays, matrix algebra, matrix inversion, data duplications
28	Hyun-Jin Choi, Seung-Ho Lim, Kyu Ho Park	JFTL: A flash translation layer based on a journal remapping for flash memory.	ACM Trans. Storage	2009	DBLP DOI BibTeX RDF	garbage detection, journal remapping, journaling file system, Flash memory, flash translation layer
28	Inhyuk Kim, Taehyoung Kim, Young Ik Eom	Design and implementation of page sharing scheme between guests in virtualization environments.	ICHIT	2009	DBLP DOI BibTeX RDF	lguest, page sharing, virtual machine, Linux
28	Eleni Drinea, Michael Mitzenmacher	Improved Lower Bounds for the Capacity of i.i.d. Deletion and Duplication Channels.	IEEE Trans. Inf. Theory	2007	DBLP DOI BibTeX RDF
28	Sébastien Angibaud, Guillaume Fertin, Irena Rusu, Annelyse Thévenin, Stéphane Vialette	A Pseudo-boolean Programming Approach for Computing the Breakpoint Distance Between Two Genomes with Duplicate Genes.	RECOMB-CG	2007	DBLP DOI BibTeX RDF	breakpoint distance, heuristic, genome rearrangement, duplication, pseudo-boolean programming
28	Bok-Min Goi, Raphael C.-W. Phan, Hean-Teik Chuah	Cryptanalysis of Two Non-anonymous Buyer-Seller Watermarking Protocols for Content Protection.	ICCSA (1)	2007	DBLP DOI BibTeX RDF	Security issues in UMS, Authentication in UMS, content protection and DRM, digital watermarking and fingerprinting, protocol
28	Sébastien Angibaud, Guillaume Fertin, Irena Rusu, Stéphane Vialette	How Pseudo-boolean Programming Can Help Genome Rearrangement Distance Computation.	Comparative Genomics	2006	DBLP DOI BibTeX RDF	heuristic, genome rearrangement, duplication, common intervals, pseudo-boolean programming
28	Shiquan Wu, Xun Gu	Gene Network: Model, Dynamics and Simulation.	COCOON	2005	DBLP DOI BibTeX RDF
28	Pawel Górecki 0001, Jerzy Tiuryn	On the Structure of Reconciliations.	Comparative Genomics	2004	DBLP DOI BibTeX RDF	gene loss, computational biology, phylogenetic tree, reconciliation, gene duplication, molecular evolution
28	Guodong Li, Youtao Zhang, Yongjing Lin, Yaochun Huang	Scalable Duplication Strategy with Bounded Availability of Processors.	ICPADS	2004	DBLP DOI BibTeX RDF	multiprocessor, mapping, heterogeneous systems, list scheduling, task duplication
28	Savina Bansal, Padam Kumar, Kuldip Singh	An Improved Duplication Strategy for Scheduling Precedence Constrained Graphs in Multiprocessor Systems.	IEEE Trans. Parallel Distributed Syst.	2003	DBLP DOI BibTeX RDF	Algorithm, distributed computing, interconnection network, multiprocessor scheduling
28	Bud Mishra	Life's Duplicities: Sex, Death, and Valis.	HiPC	2003	DBLP DOI BibTeX RDF
28	Mark Marron, Krister M. Swenson, Bernard M. E. Moret	Genomic Distances under Deletions and Insertions.	COCOON	2003	DBLP DOI BibTeX RDF	inversion distance, reversal distance, genomic distance, Hannenhalli-Pevzner
28	Michael R. Fellows, Michael T. Hallett, Ulrike Stege	On the Multiple Gene Duplication Problem.	ISAAC	1998	DBLP DOI BibTeX RDF
22	Yaofang Zhang, Peixuan Li, Ping Xie	A Hybrid Scheme Combining Duplications and LDPC Decoding to Reduce NAND Flash.	Comput. J.	2024	DBLP DOI BibTeX RDF
22	Camillo Carlo Pellizzari di San Girolamo	Conflations and Duplications in Wikidata Items: Causes, Detection, Solutions, and Issues.	Wikidata@ISWC	2023	DBLP BibTeX RDF
22	Augustin Boudry, Sasha Darmon, Nicolas Duployez, Martin Figeac, Sandrine Geffroy, Maxime Bucci, Karine Celli-Lebras, Matthieu Duchmann, Romane Joudinaud, Laurène Fenwarth, Olivier Nibourel, Laure Goursaud, Raphael Itzykson, Hervé Dombret, Mathilde Hunault, Claude Preudhomme, Mikaël Salson	Publisher Correction: Frugal alignment-free identification of FLT3-internal tandem duplications with FiLT3r.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
22	Augustin Boudry, Sasha Darmon, Nicolas Duployez, Martin Figeac, Sandrine Geffroy, Maxime Bucci, Karine Celli-Lebras, Matthieu Duchmann, Romane Joudinaud, Laurène Fenwarth, Olivier Nibourel, Laure Goursaud, Raphael Itzykson, Hervé Dombret, Mathilde Hunault, Claude Preudhomme, Mikaël Salson	Frugal alignment-free identification of FLT3-internal tandem duplications with FiLT3r.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
22	Cecilia Sensalari, Steven Maere, Rolf Lohaus	ksrates: positioning whole-genome duplications relative to speciation events in KS distributions.	Bioinform.	2022	DBLP DOI BibTeX RDF
22	Zhi-Zhong Chen, Fei Deng, Lusheng Wang 0001	Identifying duplications and lateral gene transfers simultaneously and rapidly.	J. Bioinform. Comput. Biol.	2022	DBLP DOI BibTeX RDF
22	Mladen Kovacevic 0001	On the Maximum Number of Non-Confusable Strings Evolving under Short Tandem Duplications.	Probl. Inf. Transm.	2022	DBLP DOI BibTeX RDF
22	Yaofang Zhang, Peixuan Li, Ping Xie	A Hybrid Scheme of Reducing Read Latency in NAND Flash by Integrating Duplications and Soft Decoding.	ICMLSC	2022	DBLP DOI BibTeX RDF
22	Jaeyong Bae, Jaehyung Park, Yuhun Jun, Euiseong Seo	Dedup-for-speed: storing duplications in fast programming mode for enhanced read performance.	SYSTOR	2022	DBLP DOI BibTeX RDF
22	Ron Zeira, Ron Shamir	Sorting cancer karyotypes using double-cut-and-joins, duplications and deletions.	Bioinform.	2021	DBLP DOI BibTeX RDF
22	Chaitanya Aluru, Mona Singh 0001	Improved inference of tandem domain duplications.	Bioinform.	2021	DBLP DOI BibTeX RDF
22	Francesco Mottes, Chiara Villa, Matteo Osella, Michele Caselle	The impact of whole genome duplications on the human gene regulatory networks.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
22	Yuanyuan Tang, Hao Lou, Farzad Farnoud	Error-correcting codes for short tandem duplications and at most $p$ substitutions.	ISIT	2021	DBLP DOI BibTeX RDF
22	Mattéo Delabre, Nadia El-Mabrouk, Katharina T. Huber, Manuel Lafond, Vincent Moulton, Emmanuel Noutahi, Miguel Sautie Castellanos	Evolution through segmental duplications and losses: a Super-Reconciliation approach.	Algorithms Mol. Biol.	2020	DBLP DOI BibTeX RDF
22	Aniket C. Mane, Manuel Lafond, Pedro Cipriano Feijão, Cédric Chauve	The distance and median problems in the single-cut-or-join model with single-gene duplications.	Algorithms Mol. Biol.	2020	DBLP DOI BibTeX RDF
22	Edward Chia-Heng Wang, Adam Wright	Characterizing outpatient problem list completeness and duplications in the electronic health record.	J. Am. Medical Informatics Assoc.	2020	DBLP DOI BibTeX RDF
22	Guido Todde, Ran Friedman	Pattern and Dynamics of FLT3 Duplications.	J. Chem. Inf. Model.	2020	DBLP DOI BibTeX RDF
22	Yeow Meng Chee, Johan Chrisnata, Han Mao Kiah, Tuan Thanh Nguyen	Efficient Encoding/Decoding of GC-Balanced Codes Correcting Tandem Duplications.	IEEE Trans. Inf. Theory	2020	DBLP DOI BibTeX RDF
22	José M. Sempere	On Compensation Loops in Genomic Duplications.	Int. J. Found. Comput. Sci.	2020	DBLP DOI BibTeX RDF
22	Daniele Fanelli, Rodrigo Costas 0001, Ferric C. Fang, Arturo Casadevall, Elisabeth M. Bik	Testing Hypotheses on Risk Factors for Scientific Misconduct via Matched-Control Analysis of Papers Containing Problematic Image Duplications.	Sci. Eng. Ethics	2019	DBLP DOI BibTeX RDF
22	Riccardo Dondi, Manuel Lafond, Céline Scornavacca	Reconciling multiple genes trees via segmental duplications and losses.	Algorithms Mol. Biol.	2019	DBLP DOI BibTeX RDF
22	Arda Soylev, Thong Minh Le, Hajar Amini, Can Alkan, Fereydoun Hormozdiari	Discovery of tandem and interspersed segmental duplications using high-throughput sequencing.	Bioinform.	2019	DBLP DOI BibTeX RDF
22	Arthur Zwaenepoel, Yves Van de Peer	wgd - simple command line tools for the analysis of ancient whole-genome duplications.	Bioinform.	2019	DBLP DOI BibTeX RDF
22	Eleni Adam, Tunazzina Islam, Desh Ranjan, Harold Riethman	Nanopore Guided Assembly of Segmental Duplications Near Telomeres.	BIBE	2019	DBLP DOI BibTeX RDF
22	William Digan, Maxime Wack, Vincent Looten, Antoine Neuraz, Anita Burgun, Bastien Rance	Evaluating the Impact of Text Duplications on a Corpus of More than 600, 000 Clinical Narratives in a French Hospital.	MedInfo	2019	DBLP DOI BibTeX RDF
22	Hideki Tode, Yutaro Inaba, Yosuke Tanigawa	An Information-Centric Content Delivery Network Excluding Redundant Surrogate Duplications.	CCNC	2019	DBLP DOI BibTeX RDF
22	Franklin Delehelle, Sylvain Cussat-Blanc, Jean-Marc Alliot, Hervé Luga, Patricia Balaresque	ASGART: fast and parallel genome scale segmental duplications mapping.	Bioinform.	2018	DBLP DOI BibTeX RDF
22	Ibrahim Numanagic, Alim S. Gökkaya, Lillian Zhang, Bonnie Berger, Can Alkan, Faraz Hach	Fast characterization of segmental duplications in genome assemblies.	Bioinform.	2018	DBLP DOI BibTeX RDF
22	Ibrahim Numanagic, Alim S. Gökkaya, Lillian Zhang, Bonnie Berger, Can Alkan, Faraz Hach	Fast Characterization of Segmental Duplications in Genome Assemblies.	CoRR	2018	DBLP BibTeX RDF
22	Yeow Meng Chee, Johan Chrisnata, Han Mao Kiah, Tuan Thanh Nguyen	Efficient Encoding/Decoding of Irreducible Words for Codes Correcting Tandem Duplications.	CoRR	2018	DBLP BibTeX RDF
22	Riccardo Dondi, Manuel Lafond, Céline Scornavacca	Reconciling Multiple Genes Trees via Segmental Duplications and Losses.	CoRR	2018	DBLP BibTeX RDF
22	Aniket C. Mane, Manuel Lafond, Pedro Feijão, Cédric Chauve	The Rooted SCJ Median with Single Gene Duplications.	RECOMB-CG	2018	DBLP DOI BibTeX RDF
22	Siddharth Jain, Netanel Raviv, Jehoshua Bruck	Attaining the 2nd Chargaff Rule by Tandem Duplications.	ISIT	2018	DBLP DOI BibTeX RDF
22	Yeow Meng Chee, Johan Chrisnata, Han Mao Kiah, Tuan Thanh Nguyen	Efficient Encoding/Decoding of Irreducible Words for Codes Correcting Tandem Duplications.	ISIT	2018	DBLP DOI BibTeX RDF
22	Johan Garcia 0001	Duplications and Misattributions of File Fragment Hashes in Image and Compressed Files.	NTMS	2018	DBLP DOI BibTeX RDF
22	Riccardo Dondi, Manuel Lafond, Céline Scornavacca	Reconciling Multiple Genes Trees via Segmental Duplications and Losses.	WABI	2018	DBLP DOI BibTeX RDF
22	Praveen Baskaran	Comparative analysis of gene duplications and their impact on expression levels in nematode genomes.		2018	RDF
22	S. N. Mikhaylov, V. V. Chuikova, Marina V. Sokolova, A. M. Potapenko	A case study of duplications detection for educational domain thorough ad hoc search and identification NLP-based method.	Expert Syst. J. Knowl. Eng.	2017	DBLP DOI BibTeX RDF
22	Jana Ebler, Alexander Schönhuth, Tobias Marschall	Genotyping inversions and tandem duplications.	Bioinform.	2017	DBLP DOI BibTeX RDF
22	Edwin Jacox, Mathias Weller, Eric Tannier, Céline Scornavacca	Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses.	Bioinform.	2017	DBLP DOI BibTeX RDF
22	Andreas Lenz 0001, Antonia Wachter-Zeh, Eitan Yaakobi	Bounds on Codes Correcting Tandem and Palindromic Duplications.	CoRR	2017	DBLP BibTeX RDF
22	Ron Zeira, Ron Shamir	Sorting by Cuts, Joins, and Whole Chromosome Duplications.	J. Comput. Biol.	2017	DBLP DOI BibTeX RDF
22	Alexander Lalejini, Michael J. Wiser, Charles Ofria	Gene duplications drive the evolution of complex traits and regulation.	ECAL	2017	DBLP DOI BibTeX RDF
22	Mark J. P. Chaisson, Sudipto Mukherjee 0001, Sreeram Kannan, Evan E. Eichler	Resolving Multicopy Duplications de novo Using Polyploid Phasing.	RECOMB	2017	DBLP DOI BibTeX RDF
22	Morten P. Oksvold	Incidence of Data Duplications in a Randomly Selected Pool of Life Science Publications.	Sci. Eng. Ethics	2016	DBLP DOI BibTeX RDF
22	Ashok Rajaraman, Jian Ma 0004	Reconstructing ancestral gene orders with duplications guided by synteny level genome reconstruction.	BMC Bioinform.	2016	DBLP DOI BibTeX RDF
22	M. Kroon, Eric-Wubbo Lameijer, N. Lakenberg, Jayne Y. Hehir-Kwa, D. T. Thung, P. Eline Slagboom, Joost N. Kok, Kai Ye 0001	Detecting dispersed duplications in high-throughput sequencing data using a database-free approach.	Bioinform.	2016	DBLP DOI BibTeX RDF
22	Haya Abdullah Alhakbani, Mohammad Majid al-Rifaie	Exploring Feature-Level Duplications on Imbalanced Data Using Stochastic Diffusion Search.	EUMAS/AT	2016	DBLP DOI BibTeX RDF
22	Ágnes Backhausz, Tamás F. Móri	Asymptotic Properties of a Random Graph with Duplications.	J. Appl. Probab.	2015	DBLP DOI BibTeX RDF
22	Mingfu Shao, Bernard M. E. Moret	Comparing genomes with rearrangements and segmental duplications.	Bioinform.	2015	DBLP DOI BibTeX RDF
22	Ron Zeira, Ron Shamir	Sorting by Cuts, Joins and Whole Chromosome Duplications.	CPM	2015	DBLP DOI BibTeX RDF
22	Joseph M. E. X. Lucas, Matthieu Muffato, Hugues Roest Crollius	PhylDiag: identifying complex synteny blocks that include tandem duplications using phylogenetic gene trees.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
22	Manuel Lafond, Cédric Chauve, Riccardo Dondi, Nadia El-Mabrouk	Polytomy refinement for the correction of dubious duplications in gene trees.	Bioinform.	2014	DBLP DOI BibTeX RDF
22	Eddy Taillefer, Jonathan Miller 0002	Exhaustive Computation of Exact duplications via Super and Non-Nested Local Maximal repeats.	J. Bioinform. Comput. Biol.	2014	DBLP DOI BibTeX RDF
22	Pawel Górecki 0001, Oliver Eulenstein	DrML: Probabilistic Modeling of Gene Duplications.	J. Comput. Biol.	2014	DBLP DOI BibTeX RDF
22	Tamar Pinhas, Shay Zakov, Dekel Tsur, Michal Ziv-Ukelson	Efficient edit distance with duplications and contractions.	Algorithms Mol. Biol.	2013	DBLP DOI BibTeX RDF
22	Mingfu Shao, Yu Lin 0001, Bernard M. E. Moret	Sorting genomes with rearrangements and segmental duplications through trajectory graphs.	BMC Bioinform.	2013	DBLP DOI BibTeX RDF
22	Yupeng Wang, Jingping Li, Andrew H. Paterson	MCScanX-transposed: detecting transposed gene duplications based on multiple colinearity scans.	Bioinform.	2013	DBLP DOI BibTeX RDF
22	Laurent Bulteau, Guillaume Fertin, Christian Komusiewicz, Irena Rusu	A Fixed-Parameter Algorithm for Minimum Common String Partition with Few Duplications.	CoRR	2013	DBLP BibTeX RDF
22	Zhi-Zhong Chen, Fei Deng, Lusheng Wang 0001	Identifying duplications and lateral gene transfers simultaneously and rapidly.	CIBCB	2013	DBLP DOI BibTeX RDF