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Venues (Conferences, Journals, ...)
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GrowBag graphs for keyword ? (Num. hits/coverage)
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Results
Found 194 publication records. Showing 194 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
134 | Sudipto Saha, G. P. S. Raghava |
BcePred: Prediction of Continuous B-Cell Epitopes in Antigenic Sequences Using Physico-chemical Properties. |
ICARIS |
2004 |
DBLP DOI BibTeX RDF |
|
115 | Margaret Dah-Tsyr Chang, Hao-Teng Chang, Rong-Yuan Huang, Wen-Shyong Tzou, Chih-Hong Liu, Wei-Jun Zhung, Hsien-Wei Wang, Chun-Tien Chang, Tun-Wen Pai |
A Database for Prediction of Unique Peptide Motifs as Linear Epitopes. |
ISBRA |
2007 |
DBLP DOI BibTeX RDF |
unique peptide motif, linear epitope, antigenicity, protein family, specificity |
78 | Jing Huang |
A New Kernel Based on Weighted Cross-Correlation Coefficient for SVMs and Its Application on Prediction of T-cell Epitopes. |
ICPR (2) |
2006 |
DBLP DOI BibTeX RDF |
|
76 | Chibing Gong, Yan Li, Ming Li, Jun Luo, Hong Cao, Min Long |
B-cell Epitope Mapping of Helicobacter pylori Neutrophil-Activating Protein. |
FBIT |
2007 |
DBLP DOI BibTeX RDF |
|
76 | David Heckerman, Carl Myers Kadie, Jennifer Listgarten |
Leveraging Information Across HLA Alleles/Supertypes Improves Epitope Prediction. |
RECOMB |
2006 |
DBLP DOI BibTeX RDF |
|
76 | T. C. Ip, Vincent A. Fischetti, Jeanette P. Schmidt |
An Algorithm for Identifying Similar Amino Acid Clusters among Different Alpha-Helical Coiled-Coil Proteins Using Their Secondary Structure. |
Algorithmica |
1999 |
DBLP DOI BibTeX RDF |
Coiled-coil, Epitope, Dynamic programming, Computational biology, Protein structure |
74 | Maurício Menegatti Rigo, Dinler Amaral Antunes, Gustavo Fioravanti Vieira, José Artur Bogo Chies |
MHC: Peptide Analysis: Implications on the Immunogenicity of Hantaviruses' N protein. |
BSB |
2009 |
DBLP DOI BibTeX RDF |
MHC-I, epitopes, Hantavirus, molecular docking |
59 | David C. Trudgian, Felicia Charles Johnson, Zheng Rong Yang |
Predicting HIV-1 T Cell Epitopes Using Bio-basis Function Neural Networks. |
IJCNN |
2006 |
DBLP DOI BibTeX RDF |
|
59 | Feng Shi, Jing Huang |
Prediction of T-cell Epitopes Using Support Vector Machine and Similarity Kernel. |
CIS (1) |
2005 |
DBLP DOI BibTeX RDF |
|
57 | Liwen You, Ping Zhang 0008, Mikael Bodén, Vladimir Brusic |
Understanding Prediction Systems for HLA-Binding Peptides and T-Cell Epitope Identification. |
PRIB |
2007 |
DBLP DOI BibTeX RDF |
|
57 | Alessandro Sette, Huynh-Hoa Bui, John Sidney, Philip E. Bourne, Søren Buus, Ward Fleri, R. Kubo, Ole Lund, D. Nemazee, Julia V. Ponomarenko, Muthu Sathiamurthy, Scott Stewart, Scott Way, Stephen S. Wilson, Björn Peters |
The Immune Epitope Database and Analysis Resource. |
PRIB |
2006 |
DBLP DOI BibTeX RDF |
|
57 | Liliana Florea, Bjarni V. Halldórsson, Oliver Kohlbacher, Russell Schwartz, Stephen Hoffman, Sorin Istrail |
Epitope Prediction Algorithms for Peptide based Vaccine Design. |
CSB |
2003 |
DBLP DOI BibTeX RDF |
|
42 | Sandeep Kumar Dhanda, Jitendra Malviya, Sudheer Gupta |
Not all T cell epitopes are equally desired: a review of in silico tools for the prediction of cytokine-inducing potential of T-cell epitopes. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
40 | Niall J. Haslam, Toby J. Gibson |
EpiC: A Resource for Integrating Information and Analyses to Enable Selection of Epitopes for Antibody Based Experiments. |
DILS |
2009 |
DBLP DOI BibTeX RDF |
|
40 | Reeti Tandon, Sudeshna Adak, Brion Sarachan, William FitzHugh, Jeremy Heil, Vaibhav A. Narayan |
Predicting Continuous Epitopes in Proteins. |
CSB Workshops |
2005 |
DBLP DOI BibTeX RDF |
|
38 | Dennis Maletich Junqueira, Rúbia Marília de Medeiros, Sabrina Esteves de Matos Almeida, Vanessa Rodrigues Paixão-Cortez, Paulo Michel Roehe, Fernando Rosado Spilki |
Mapping HIV-1 Subtype C gp120Epitopes Using a Bioinformatic Approach. |
BSB |
2009 |
DBLP DOI BibTeX RDF |
HIV-1, subtype C, epitope, gp120, bioinformatics, HLA |
38 | Hua Zhong, Shuji Gong, Wei Zhao, Lidan Chen, Hao Zhou, Liang Peng, Hong Cao |
Bioinformatics Analysis of the Envelope Glycoprotein and Construction of Infectious RNA Transcripts of Dengue Virus. |
FBIT |
2007 |
DBLP DOI BibTeX RDF |
|
21 | Nishant Kumar, Sadhana Tripathi, Neelam Sharma, Sumeet Patiyal, Naorem Leimarembi Devi, Gajendra P. S. Raghava |
A method for predicting linear and conformational B-cell epitopes in an antigen from its primary sequence. |
Comput. Biol. Medicine |
2024 |
DBLP DOI BibTeX RDF |
|
21 | Vladislav Victorovich Khrustalev, Aleksander Nicolaevich Stojarov, Chenguang Shen, Tatyana Aleksandrovna Khrustaleva |
Consequences of asymmetric mutational pressure for the dynamic of linear B-cell epitopes repertoire of influenza a virus neuraminidase rearrangement. |
Biosyst. |
2023 |
DBLP DOI BibTeX RDF |
|
21 | Anand K. Keshri, Rimanpreet Kaur, Suraj S. Rawat, Naina Arora, Rajan K. Pandey, Bajarang V. Kumbhar, Amit Mishra, Shweta Tripathi, Amit Prasad |
Designing and development of multi-epitope chimeric vaccine against Helicobacter pylori by exploring its entire immunogenic epitopes: an immunoinformatic approach. |
BMC Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
21 | Luca Mollica, Gabriele Giachin |
Recognition Mechanisms between a Nanobody and Disordered Epitopes of the Human Prion Protein: An Integrative Molecular Dynamics Study. |
J. Chem. Inf. Model. |
2023 |
DBLP DOI BibTeX RDF |
|
21 | Chengzheng Tai, Hongjun Li, Jing Zhang 0019 |
BCEDB: a linear B-cell epitopes database for SARS-CoV-2. |
Database J. Biol. Databases Curation |
2023 |
DBLP DOI BibTeX RDF |
|
21 | Yangyang Cai, Dezhong Lv, Donghao Li, Jiaqi Yin, Yingying Ma, Ya Luo, Limei Fu, Na Ding, Yongsheng Li 0001, Zhenwei Pan, Xia Li 0004, Juan Xu 0001 |
IEAtlas: an atlas of HLA-presented immune epitopes derived from non-coding regions. |
Nucleic Acids Res. |
2023 |
DBLP DOI BibTeX RDF |
|
21 | Yuansong Zeng, Zhuoyi Wei, Qianmu Yuan, Sheng Chen, Weijiang Yu, Yutong Lu, Jianzhao Gao, Yuedong Yang |
Identifying B-cell epitopes using AlphaFold2 predicted structures and pretrained language model. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
21 | Emmi Jokinen, Alexandru Dumitrescu, Jani Huuhtanen, Vladimir Gligorijevic, Satu Mustjoki, Richard Bonneau, Markus Heinonen, Harri Lähdesmäki |
TCRconv: predicting recognition between T cell receptors and epitopes using contextualized motifs. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
21 | Zahed Khatooni, Navid Teymourian, Heather L. Wilson |
Using a novel structure/function approach to select diverse swine major histocompatibility complex 1 alleles to predict epitopes for vaccine development. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
21 | Dani Korpela, Emmi Jokinen, Alexandru Dumitrescu, Jani Huuhtanen, Satu Mustjoki, Harri Lähdesmäki |
EPIC-TRACE: predicting TCR binding to unseen epitopes using attention and contextualized embeddings. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
21 | Xingang Peng, Yipin Lei, Peiyuan Feng, Lemei Jia, Jianzhu Ma, Dan Zhao, Jianyang Zeng 0001 |
Characterizing the interaction conformation between T-cell receptors and epitopes with deep learning. |
Nat. Mac. Intell. |
2023 |
DBLP DOI BibTeX RDF |
|
21 | Muhammad Attique, Tamim Alkhalifah, Fahad Alturise, Yaser Daanial Khan |
DeepBCE: Evaluation of deep learning models for identification of immunogenic B-cell epitopes. |
Comput. Biol. Chem. |
2023 |
DBLP DOI BibTeX RDF |
|
21 | Arzu Mijit, Xiaona Wang, Yanlin Li, Hangwei Xu, Yingjun Chen, Weiwei Xue |
Mapping synthetic binding proteins epitopes on diverse protein targets by protein structure prediction and protein-protein docking. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
21 | Saurav Kumar Mishra, Prerna Priya, Gyan Prakash Rai, Rizwanul Haque, Asheesh Shanker |
Coevolution based immunoinformatics approach considering variability of epitopes to combat different strains: A case study using spike protein of SARS-CoV-2. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
21 | Anjali Dhall, Sumeet Patiyal, Shubham Choudhury, Shipra Jain, Kashish Narang, Gajendra P. S. Raghava |
TNFepitope: A webserver for the prediction of TNF-α inducing epitopes. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
21 | Jiani Chen, Swan Tan, Vasanthi Avadhanula, Leonard Moise, Pedro A. Piedra, Anne S. De Groot, Justin Bahl |
Diversity and evolution of computationally predicted T cell epitopes against human respiratory syncytial virus. |
PLoS Comput. Biol. |
2023 |
DBLP DOI BibTeX RDF |
|
21 | Shengli Zhang, Yunyun Liang, Yujie Xu, Yuanyuan Jing |
TNFIPs-Net: A deep learning model based on multi-feature fusion for prediction of TNF-α inducing epitopes. |
BIBM |
2023 |
DBLP DOI BibTeX RDF |
|
21 | Ganesh Karnati, Sujitha D, Fayaz Sm |
Enhancing Accuracy and Correlation Coefficients of Cancer epitopes through Machine Learning Approaches. |
ICCCNT |
2023 |
DBLP DOI BibTeX RDF |
|
21 | Hao-Dong Xu, Zhongming Zhao |
NetBCE: An Interpretable Deep Neural Network for Accurate Prediction of Linear B-cell Epitopes. |
Genom. Proteom. Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
21 | Rui Yin 0002, Xianghe Zhu, Min Zeng, Pengfei Wu, Min Li 0007, Chee Keong Kwoh 0001 |
A framework for predicting variable-length epitopes of human-adapted viruses using machine learning methods. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
21 | Tanmaya Kumar Sahu, Prabina Kumar Meher, Nalini Kanta Choudhury, Atmakuri Ramakrishna Rao |
A comparative analysis of amino acid encoding schemes for the prediction of flexible length linear B-cell epitopes. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
21 | Paul R. Buckley, Chloe H. Lee, Ruichong Ma, Isaac Woodhouse, Jeongmin Woo, Vasily Tsvetkov, Dmitrii S. Shcherbinin, Agne Antanaviciute, Mikhail Shughay, Margarida Rei, Alison Simmons, Hashem Koohy |
Evaluating performance of existing computational models in predicting CD8+ T cell pathogenic epitopes and cancer neoantigens. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
21 | Hyunsu An, Minho Eun, Jawoon Yi, Jihwan Park |
CRESSP: a comprehensive pipeline for prediction of immunopathogenic SARS-CoV-2 epitopes using structural properties of proteins. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
21 | Priyank Shukla, Preeti Pandey, Bodhayan Prasad, Tony Robinson, Rituraj Purohit, Leon G. D'cruz, Murtaza M. Tambuwala, Ankur Mutreja, Jim Harkin, Taranjit Singh Rai, Elaine K. Murray, David S. Gibson, Anthony J. Bjourson |
Immuno-informatics analysis predicts B and T cell consensus epitopes for designing peptide vaccine against SARS-CoV-2 with 99.82% global population coverage. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
21 | Shamima Rashid, Teng Ann Ng, Chee Keong Kwoh 0001 |
Jupytope: computational extraction of structural properties of viral epitopes. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
21 | Wajdi Alghamdi, Muhammad Attique, Ebraheem Alzahrani, Malik Zaka Ullah, Yaser Daanial Khan |
LBCEPred: a machine learning model to predict linear B-cell epitopes. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
21 | Pinar Cihan, Zeynep Banu Ozger |
A new approach for determining SARS-CoV-2 epitopes using machine learning-based in silico methods. |
Comput. Biol. Chem. |
2022 |
DBLP DOI BibTeX RDF |
|
21 | Ofer M. Shir, Assaf Israeli, Assaf Caftory, Guy Zepko, Itai Bloch |
Algorithmically-guided discovery of viral epitopes via linguistic parsing: Problem formulation and solving by soft computing. |
Appl. Soft Comput. |
2022 |
DBLP DOI BibTeX RDF |
|
21 | Ismail Shah, Sehrooz Jamil, Saira Rehmat, Hammad Ahmad Butt, Syed Shujait Ali, Muhammad Idrees, Yifei Zhan, Zahid Hussain, Shahid Ali, Muhammad Waseem, Arshad Iqbal, Sajjad Ahmad, Abbas Khan, Yanjing Wang 0003, Dong-Qing Wei |
Evaluation and identification of essential therapeutic proteins and vaccinomics approach towards multi-epitopes vaccine designing against Legionella pneumophila for immune response instigation. |
Comput. Biol. Medicine |
2022 |
DBLP DOI BibTeX RDF |
|
21 | Shweta Jakhmola, Md Fulbabu Sk, Akash Chatterjee, Khushboo Jain, Parimal Kar, Hem Chandra Jha |
A plausible contributor to multiple sclerosis; presentation of antigenic myelin protein epitopes by major histocompatibility complexes. |
Comput. Biol. Medicine |
2022 |
DBLP DOI BibTeX RDF |
|
21 | Israr Fatima, Sajjad Ahmad, Sumra Wajid Abbasi, Usman Ali Ashfaq, Farah Shahid, Muhammad Tahir Ul Qamar, Abdur Rehman, Khaled S. Allemailem |
Designing of a multi-epitopes-based peptide vaccine against rift valley fever virus and its validation through integrated computational approaches. |
Comput. Biol. Medicine |
2022 |
DBLP DOI BibTeX RDF |
|
21 | Fahad Humayun, Yutong Cai, Abbas Khan, Syed Ali Farhan, Fatima Khan, Usman Ishrat Rana, Anum binte Qamar, Nasim Fawad, Shazia Shamas, Dongqing-Wei |
Structure-guided design of multi-epitopes vaccine against variants of concern (VOCs) of SARS-CoV-2 and validation through In silico cloning and immune simulations. |
Comput. Biol. Medicine |
2022 |
DBLP DOI BibTeX RDF |
|
21 | Paul F. Zierep, Randi Vita, Nina Blazeska, Aurélien F. A. Moumbock, Jason A. Greenbaum, Bjoern Peters, Stefan Günther |
Towards the prediction of non-peptidic epitopes. |
PLoS Comput. Biol. |
2022 |
DBLP DOI BibTeX RDF |
|
21 | Saravanan Vijayakumar |
Harnessing Fuzzy Rule Based System for Screening Major Histocompatibility Complex Class I Peptide Epitopes from the Whole Proteome: An Implementation on the Proteome of Leishmania donovani. |
J. Comput. Biol. |
2022 |
DBLP DOI BibTeX RDF |
|
21 | Vidhu Agarwal, Akhilesh Tiwari, Pritish Varadwaj |
Prediction of suitable T and B cell epitopes for eliciting immunogenic response against SARS-CoV-2 and its mutant. |
Netw. Model. Anal. Health Informatics Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
21 | Kiran Sewsankar |
Machine Learning Models of B-cell and T-cell Epitopes Using Sequence and Structure Information. |
|
2022 |
RDF |
|
21 | Akash Bahai |
Computational methods for characterizing viral neutralization data and predicting linear B-cell epitopes (Computergestützte Methoden zur Charakterisierung viraler Neutralisierungsdaten und Vorhersage linearer B-Zell-Epitope) (PDF / PS) |
|
2022 |
DOI RDF |
|
21 | Lindsay M. W. Piel, Codie J. Durfee, Stephen N. White |
Proteome-wide analysis of Coxiella burnetii for conserved T-cell epitopes with presentation across multiple host species. |
BMC Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
21 | Guanglan Zhang, Lou Chitkushev, Lars Rønn Olsen, Derin B. Keskin, Vladimir Brusic |
TANTIGEN 2.0: a knowledge base of tumor T cell antigens and epitopes. |
BMC Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
21 | Kiran Kadam, Noor Peerzada, Rajiv Karbhal, Sangeeta Sawant, Jayaraman Valadi, Urmila Kulkarni-Kale |
Antibody Class(es) Predictor for Epitopes (AbCPE): A Multi-Label Classification Algorithm. |
Frontiers Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
21 | Jonathan Hare, David Morrison, Morten Nielsen 0001 |
Sampling SARS-CoV-2 Proteomes for Predicted CD8 T-Cell Epitopes as a Tool for Understanding Immunogenic Breadth and Rational Vaccine Design. |
Frontiers Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
21 | Rhiane Moody, Kirsty L. Wilson, Jennifer C. Boer, Jessica K. Holien, Katie L. Flanagan, Anthony Jaworowski, Magdalena Plebanski |
Predicted B Cell Epitopes Highlight the Potential for COVID-19 to Drive Self-Reactive Immunity. |
Frontiers Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
21 | Dong-Gun Kim, Yoonjoo Choi, Hak-Sung Kim |
Epitopes of Protein Binders Are Related to the Structural Flexibility of a Target Protein Surface. |
J. Chem. Inf. Model. |
2021 |
DBLP DOI BibTeX RDF |
|
21 | Neelam Sharma, Sumeet Patiyal, Anjali Dhall, Akshara Pande, Chakit Arora, Gajendra P. S. Raghava |
AlgPred 2.0: an improved method for predicting allergenic proteins and mapping of IgE epitopes. |
Briefings Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
21 | Anna Bernasconi 0002, Luca Cilibrasi, Ruba Al Khalaf, Tommaso Alfonsi, Stefano Ceri, Pietro Pinoli, Arif Canakoglu |
EpiSurf: metadata-driven search server for analyzing amino acid changes within epitopes of SARS-CoV-2 and other viral species. |
Database J. Biol. Databases Curation |
2021 |
DBLP DOI BibTeX RDF |
|
21 | Qingzhen Hou, Bas Stringer, Katharina Waury, Henriette Capel, Reza Haydarlou, Fuzhong Xue, Sanne Abeln, Jaap Heringa, K. Anton Feenstra |
SeRenDIP-CE: sequence-based interface prediction for conformational epitopes. |
Bioinform. |
2021 |
DBLP DOI BibTeX RDF |
|
21 | Aline Silva da Costa, Tácio Vinício Amorim Fernandes, Murilo Lamim Bello, Theo Luiz Ferraz de Souza |
Evaluation of potential MHC-I allele-specific epitopes in Zika virus proteins and the effects of mutations on peptide-MHC-I interaction studied using in silico approaches. |
Comput. Biol. Chem. |
2021 |
DBLP DOI BibTeX RDF |
|
21 | Richard A. Brualdi, Geir Dahl |
Convex (0, 1)-matrices and their epitopes. |
Discret. Appl. Math. |
2021 |
DBLP DOI BibTeX RDF |
|
21 | Emmi Jokinen, Jani Huuhtanen, Satu Mustjoki, Markus Heinonen, Harri Lähdesmäki |
Predicting recognition between T cell receptors and epitopes with TCRGP. |
PLoS Comput. Biol. |
2021 |
DBLP DOI BibTeX RDF |
|
21 | Juan L. Trincado, Marina Reixachs-Solé, Judith Pérez-Granado, Tim Fugmann, Ferran Sanz, Jun Yokota, Eduardo Eyras |
ISOTOPE: ISOform-guided prediction of epiTOPEs in cancer. |
PLoS Comput. Biol. |
2021 |
DBLP DOI BibTeX RDF |
|
21 | Md. Mehedi Hasan 0002, Mst. Shamima Khatun, Hiroyuki Kurata |
iLBE for Computational Identification of Linear B-cell Epitopes by Integrating Sequence and Evolutionary Features. |
Genom. Proteom. Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
21 | Marta Gomez-Perosanz, Alvaro Ras-Carmona, Esther M. Lafuente, Pedro A. Reche |
Identification of CD8+ T cell epitopes through proteasome cleavage site predictions. |
BMC Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
21 | Sergio A. Poveda-Cuevas, Catherine Etchebest, Fernando Luís Barroso da Silva |
Identification of Electrostatic Epitopes in Flavivirus by Computer Simulations: The PROCEEDpKa Method. |
J. Chem. Inf. Model. |
2020 |
DBLP DOI BibTeX RDF |
|
21 | Amit Kumar Gupta, Archit Kumar, Akanksha Rajput, Karambir Kaur, Showkat Ahmed Dar, Anamika Thakur, Kirti Megha, Manoj Kumar 0003 |
NipahVR: a resource of multi-targeted putative therapeutics and epitopes for the Nipah virus. |
Database J. Biol. Databases Curation |
2020 |
DBLP DOI BibTeX RDF |
|
21 | Simone Puccio, Giorgio Grillo, Arianna Consiglio, Maria Felicia Soluri, Daniele Sblattero, Diego Cotella, Claudio Santoro, Sabino Liuni, Gianluca De Bellis, Enrico Lugli, Clelia Peano, Flavio Licciulli |
InteractomeSeq: a web server for the identification and profiling of domains and epitopes from phage display and next generation sequencing data. |
Nucleic Acids Res. |
2020 |
DBLP DOI BibTeX RDF |
|
21 | Ying Zhu, Bo Hu, Long Xu, Lili Yang, Congjie Wang, Siyu Zhang, Xufeng He, Tesheng Gao, Yong Guo, Changxin Huang |
Tumor-Specific Nascent Nine-Peptide-Epitopes Prediction and Bioinformatics Characterization in Human Colorectal Cancer. |
J. Medical Imaging Health Informatics |
2020 |
DBLP DOI BibTeX RDF |
|
21 | Sinu Paul, Nathan P. Croft, Anthony W. Purcell, David C. Tscharke, Alessandro Sette, Morten Nielsen 0001, Bjoern Peters |
Benchmarking predictions of MHC class I restricted T cell epitopes in a comprehensively studied model system. |
PLoS Comput. Biol. |
2020 |
DBLP DOI BibTeX RDF |
|
21 | Salvador Eugenio C. Caoili |
Beyond B-Cell Epitopes: Curating Positive Data on Antipeptide Paratope Binding to Support Development of Computational Tools for Vaccine Design and Other Translational Applications. |
BCB |
2020 |
DBLP DOI BibTeX RDF |
|
21 | Robayet Chowdhury |
Prediction of Linear Epitopes by a Machine Learning Algorithm Developed Using the Immunosignature Technology. |
|
2020 |
RDF |
|
21 | Vincent Demolombe, Alexandre G. de Brevern, Franck Molina, Géraldine Lavigne, Claude Granier, Violaine Moreau |
Benchmarking the PEPOP methods for mimicking discontinuous epitopes. |
BMC Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
21 | Vincent Demolombe, Alexandre G. de Brevern, Liza Figueredo Felicori, Christophe Nguyen, Ricardo Andrez Machado de Avila, Lionel Valera, Bénédicte Jardin-Watelet, Géraldine Lavigne, Aurélien Lebreton, Franck Molina, Violaine Moreau |
PEPOP 2.0: new approaches to mimic non-continuous epitopes. |
BMC Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
21 | Fabio Dall'antonia, Walter Keller |
SPADE web service for prediction of allergen IgE epitopes. |
Nucleic Acids Res. |
2019 |
DBLP DOI BibTeX RDF |
|
21 | Georcki Ropón-Palacios, Manuel E. Chenet-Zuta, Kewin Otazu, Gustavo E. Olivos-Ramirez, Ihosvany Camps |
Novel multi-epitope protein containing conserved epitopes from different Leishmania species as potential vaccine candidate: Integrated immunoinformatics and molecular dynamics approach. |
Comput. Biol. Chem. |
2019 |
DBLP DOI BibTeX RDF |
|
21 | Hongjun Bai, Yifan Li 0008, Nelson Michael, Merlin L. Robb, Morgane Rolland |
The breadth of HIV-1 neutralizing antibodies depends on the conservation of key sites in their epitopes. |
PLoS Comput. Biol. |
2019 |
DBLP DOI BibTeX RDF |
|
21 | Gopinath Samykannu, Princy Vijayababu, Christian Bharathi Antonyraj, Perumal Perumal, Sundarabaalaji Narayanan, Syed Ibrahim Basheer Ahamed, Jeyakumar Natarajan |
In Silico Characterization of B Cell and T Cell Epitopes for Subunit Vaccine Design of Salmonella typhi PgtE: A Molecular Dynamics Simulation Approach. |
J. Comput. Biol. |
2019 |
DBLP DOI BibTeX RDF |
|
21 | Qian Xie, Xiaoyan He, Fangji Yang, Xuling Liu, Ying Li, Yujing Liu, ZhengMeng Yang, Jianhai Yu, Bao Zhang, Wei Zhao |
Analysis of the Genome Sequence and Prediction of B-Cell Epitopes of the Envelope Protein of Middle East Respiratory Syndrome-Coronavirus. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
21 | Sandeep Kumar Dhanda, Randi Vita, Brendan Ha, Alba Grifoni, Bjoern Peters, Alessandro Sette |
ImmunomeBrowser: a tool to aggregate and visualize complex and heterogeneous epitopes in reference proteins. |
Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
21 | Liang Zhao, Shaogui Wu, Jiawen Jiang, Wencui Li, Jie Luo, Jinyan Li 0001 |
Novel overlapping subgraph clustering for the detection of antigen epitopes. |
Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
21 | Mohammad M. Pourseif, Gholamali Moghaddam, Behrouz Naghili, Nazli Saeedi, Sepideh Parvizpour, Ahmad Nematollahi, Yadollah Omidi |
A novel in silico minigene vaccine based on CD4+ T-helper and B-cell epitopes of EG95 isolates for vaccination against cystic echinococcosis. |
Comput. Biol. Chem. |
2018 |
DBLP DOI BibTeX RDF |
|
21 | Smriti Mishra, Manish Manish |
Studies on computational grafting of malarial epitopes in serum albumin. |
Comput. Biol. Medicine |
2018 |
DBLP DOI BibTeX RDF |
|
21 | Weilong Zhao, Xinwei Sher |
Systematically benchmarking peptide-MHC binding predictors: From synthetic to naturally processed epitopes. |
PLoS Comput. Biol. |
2018 |
DBLP DOI BibTeX RDF |
|
21 | Jing Ren, Jiangning Song, John T. Ellis, Jinyan Li 0001 |
Staged heterogeneity learning to identify conformational B-cell epitopes from antigen sequences. |
BMC Genom. |
2017 |
DBLP DOI BibTeX RDF |
|
21 | Georgios A. Dalkas, Marianne Rooman |
SEPIa, a knowledge-driven algorithm for predicting conformational B-cell epitopes from the amino acid sequence. |
BMC Bioinform. |
2017 |
DBLP DOI BibTeX RDF |
|
21 | Martin Closter Jespersen, Bjoern Peters, Morten Nielsen 0001, Paolo Marcatili |
BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes. |
Nucleic Acids Res. |
2017 |
DBLP DOI BibTeX RDF |
|
21 | Wadood Abdul, Aamir Mehmood, Huma Khan, Muhammad Ilyas 0003, Ayaz Ahmad, Mohammed Alarjah, Tareq Abu-Izneid |
Epitopes based drug design for dengue virus envelope protein: A computational approach. |
Comput. Biol. Chem. |
2017 |
DBLP DOI BibTeX RDF |
|
21 | Ho Won Lee, Da Som Kim, Jong Hyun Lee, Hyuck Gi Kwon, Ga-Young Park, Ji-Young Ahn, Ok Chan Jeong |
Yeast surface displayed porcine epidemic diarrhea (PED) viral epitopes and microfluidic encapsulation in Ca-Alginate beads for oral vaccination. |
MHS |
2017 |
DBLP DOI BibTeX RDF |
|
21 | Rob Patro, Raquel Norel, Robert J. Prill, Julio Saez-Rodriguez, Peter Lorenz, Felix Steinbeck, Bjoern Ziems, Mitja Lustrek, Nicola Barbarini, Alessandra Tiengo, Riccardo Bellazzi, Hans-Jürgen Thiesen, Gustavo Stolovitzky, Carl Kingsford |
A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin. |
BMC Bioinform. |
2016 |
DBLP DOI BibTeX RDF |
|
21 | Mahesha N. Nadugala, Prasad H. Premaratne, Charitha L. Goonasekara |
Systematic Bioinformatic Approach for Prediction of Linear B-Cell Epitopes on Dengue E and prM Protein. |
Adv. Bioinformatics |
2016 |
DBLP DOI BibTeX RDF |
|
21 | Faruku Bande, Siti Suri Arshad, Mohd Hair Bejo, Saeid Kadkhodaei, Abdul Rahman Omar |
Prediction and In Silico Identification of Novel B-Cells and T-Cells Epitopes in the S1-Spike Glycoprotein of M41 and CR88 (793/B) Infectious Bronchitis Virus Serotypes for Application in Peptide Vaccines. |
Adv. Bioinformatics |
2016 |
DBLP DOI BibTeX RDF |
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21 | Md. Masud Parvege, Monzilur Rahman, Yead Morshed Nibir, Mohammad Shahnoor Hossain |
Two highly similar LAEDDTNAQKT and LTDKIGTEI epitopes in G glycoprotein may be useful for effective epitope based vaccine design against pathogenic Henipavirus. |
Comput. Biol. Chem. |
2016 |
DBLP DOI BibTeX RDF |
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21 | Lies Boelen, Patrick K. O'Neill, Kathryn J. Quigley, Catherine J. Reynolds, Bernard Maillere, John H. Robinson, Ganjana Lertmemongkolchai, Daniel M. Altmann, Rosemary J. Boyton, Becca Asquith |
BIITE: A Tool to Determine HLA Class II Epitopes from T Cell ELISpot Data. |
PLoS Comput. Biol. |
2016 |
DBLP DOI BibTeX RDF |
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21 | Davorka R. Jandrlic, Goran M. Lazic, Nenad S. Mitic, Mirjana D. Pavlovic |
Software tools for simultaneous data visualization and T cell epitopes and disorder prediction in proteins. |
J. Biomed. Informatics |
2016 |
DBLP DOI BibTeX RDF |
|
21 | Mahsa Taherzadeh, Abolghasem Esmaeili, Mohamad Reza Ganjalikhany |
In silico vaccine design against type 1 diabetes based on molecular modeling of coxsackievirus B4 epitopes. |
Netw. Model. Anal. Health Informatics Bioinform. |
2016 |
DBLP DOI BibTeX RDF |
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