Search results for "epitopes"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
134	Sudipto Saha, G. P. S. Raghava	BcePred: Prediction of Continuous B-Cell Epitopes in Antigenic Sequences Using Physico-chemical Properties.	ICARIS	2004	DBLP DOI BibTeX RDF
115	Margaret Dah-Tsyr Chang, Hao-Teng Chang, Rong-Yuan Huang, Wen-Shyong Tzou, Chih-Hong Liu, Wei-Jun Zhung, Hsien-Wei Wang, Chun-Tien Chang, Tun-Wen Pai	A Database for Prediction of Unique Peptide Motifs as Linear Epitopes.	ISBRA	2007	DBLP DOI BibTeX RDF	unique peptide motif, linear epitope, antigenicity, protein family, specificity
78	Jing Huang	A New Kernel Based on Weighted Cross-Correlation Coefficient for SVMs and Its Application on Prediction of T-cell Epitopes.	ICPR (2)	2006	DBLP DOI BibTeX RDF
76	Chibing Gong, Yan Li, Ming Li, Jun Luo, Hong Cao, Min Long	B-cell Epitope Mapping of Helicobacter pylori Neutrophil-Activating Protein.	FBIT	2007	DBLP DOI BibTeX RDF
76	David Heckerman, Carl Myers Kadie, Jennifer Listgarten	Leveraging Information Across HLA Alleles/Supertypes Improves Epitope Prediction.	RECOMB	2006	DBLP DOI BibTeX RDF
76	T. C. Ip, Vincent A. Fischetti, Jeanette P. Schmidt	An Algorithm for Identifying Similar Amino Acid Clusters among Different Alpha-Helical Coiled-Coil Proteins Using Their Secondary Structure.	Algorithmica	1999	DBLP DOI BibTeX RDF	Coiled-coil, Epitope, Dynamic programming, Computational biology, Protein structure
74	Maurício Menegatti Rigo, Dinler Amaral Antunes, Gustavo Fioravanti Vieira, José Artur Bogo Chies	MHC: Peptide Analysis: Implications on the Immunogenicity of Hantaviruses' N protein.	BSB	2009	DBLP DOI BibTeX RDF	MHC-I, epitopes, Hantavirus, molecular docking
59	David C. Trudgian, Felicia Charles Johnson, Zheng Rong Yang	Predicting HIV-1 T Cell Epitopes Using Bio-basis Function Neural Networks.	IJCNN	2006	DBLP DOI BibTeX RDF
59	Feng Shi, Jing Huang	Prediction of T-cell Epitopes Using Support Vector Machine and Similarity Kernel.	CIS (1)	2005	DBLP DOI BibTeX RDF
57	Liwen You, Ping Zhang 0008, Mikael Bodén, Vladimir Brusic	Understanding Prediction Systems for HLA-Binding Peptides and T-Cell Epitope Identification.	PRIB	2007	DBLP DOI BibTeX RDF
57	Alessandro Sette, Huynh-Hoa Bui, John Sidney, Philip E. Bourne, Søren Buus, Ward Fleri, R. Kubo, Ole Lund, D. Nemazee, Julia V. Ponomarenko, Muthu Sathiamurthy, Scott Stewart, Scott Way, Stephen S. Wilson, Björn Peters	The Immune Epitope Database and Analysis Resource.	PRIB	2006	DBLP DOI BibTeX RDF
57	Liliana Florea, Bjarni V. Halldórsson, Oliver Kohlbacher, Russell Schwartz, Stephen Hoffman, Sorin Istrail	Epitope Prediction Algorithms for Peptide based Vaccine Design.	CSB	2003	DBLP DOI BibTeX RDF
42	Sandeep Kumar Dhanda, Jitendra Malviya, Sudheer Gupta	Not all T cell epitopes are equally desired: a review of in silico tools for the prediction of cytokine-inducing potential of T-cell epitopes.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
40	Niall J. Haslam, Toby J. Gibson	EpiC: A Resource for Integrating Information and Analyses to Enable Selection of Epitopes for Antibody Based Experiments.	DILS	2009	DBLP DOI BibTeX RDF
40	Reeti Tandon, Sudeshna Adak, Brion Sarachan, William FitzHugh, Jeremy Heil, Vaibhav A. Narayan	Predicting Continuous Epitopes in Proteins.	CSB Workshops	2005	DBLP DOI BibTeX RDF
38	Dennis Maletich Junqueira, Rúbia Marília de Medeiros, Sabrina Esteves de Matos Almeida, Vanessa Rodrigues Paixão-Cortez, Paulo Michel Roehe, Fernando Rosado Spilki	Mapping HIV-1 Subtype C gp120Epitopes Using a Bioinformatic Approach.	BSB	2009	DBLP DOI BibTeX RDF	HIV-1, subtype C, epitope, gp120, bioinformatics, HLA
38	Hua Zhong, Shuji Gong, Wei Zhao, Lidan Chen, Hao Zhou, Liang Peng, Hong Cao	Bioinformatics Analysis of the Envelope Glycoprotein and Construction of Infectious RNA Transcripts of Dengue Virus.	FBIT	2007	DBLP DOI BibTeX RDF
21	Nishant Kumar, Sadhana Tripathi, Neelam Sharma, Sumeet Patiyal, Naorem Leimarembi Devi, Gajendra P. S. Raghava	A method for predicting linear and conformational B-cell epitopes in an antigen from its primary sequence.	Comput. Biol. Medicine	2024	DBLP DOI BibTeX RDF
21	Vladislav Victorovich Khrustalev, Aleksander Nicolaevich Stojarov, Chenguang Shen, Tatyana Aleksandrovna Khrustaleva	Consequences of asymmetric mutational pressure for the dynamic of linear B-cell epitopes repertoire of influenza a virus neuraminidase rearrangement.	Biosyst.	2023	DBLP DOI BibTeX RDF
21	Anand K. Keshri, Rimanpreet Kaur, Suraj S. Rawat, Naina Arora, Rajan K. Pandey, Bajarang V. Kumbhar, Amit Mishra, Shweta Tripathi, Amit Prasad	Designing and development of multi-epitope chimeric vaccine against Helicobacter pylori by exploring its entire immunogenic epitopes: an immunoinformatic approach.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
21	Luca Mollica, Gabriele Giachin	Recognition Mechanisms between a Nanobody and Disordered Epitopes of the Human Prion Protein: An Integrative Molecular Dynamics Study.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
21	Chengzheng Tai, Hongjun Li, Jing Zhang 0019	BCEDB: a linear B-cell epitopes database for SARS-CoV-2.	Database J. Biol. Databases Curation	2023	DBLP DOI BibTeX RDF
21	Yangyang Cai, Dezhong Lv, Donghao Li, Jiaqi Yin, Yingying Ma, Ya Luo, Limei Fu, Na Ding, Yongsheng Li 0001, Zhenwei Pan, Xia Li 0004, Juan Xu 0001	IEAtlas: an atlas of HLA-presented immune epitopes derived from non-coding regions.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
21	Yuansong Zeng, Zhuoyi Wei, Qianmu Yuan, Sheng Chen, Weijiang Yu, Yutong Lu, Jianzhao Gao, Yuedong Yang	Identifying B-cell epitopes using AlphaFold2 predicted structures and pretrained language model.	Bioinform.	2023	DBLP DOI BibTeX RDF
21	Emmi Jokinen, Alexandru Dumitrescu, Jani Huuhtanen, Vladimir Gligorijevic, Satu Mustjoki, Richard Bonneau, Markus Heinonen, Harri Lähdesmäki	TCRconv: predicting recognition between T cell receptors and epitopes using contextualized motifs.	Bioinform.	2023	DBLP DOI BibTeX RDF
21	Zahed Khatooni, Navid Teymourian, Heather L. Wilson	Using a novel structure/function approach to select diverse swine major histocompatibility complex 1 alleles to predict epitopes for vaccine development.	Bioinform.	2023	DBLP DOI BibTeX RDF
21	Dani Korpela, Emmi Jokinen, Alexandru Dumitrescu, Jani Huuhtanen, Satu Mustjoki, Harri Lähdesmäki	EPIC-TRACE: predicting TCR binding to unseen epitopes using attention and contextualized embeddings.	Bioinform.	2023	DBLP DOI BibTeX RDF
21	Xingang Peng, Yipin Lei, Peiyuan Feng, Lemei Jia, Jianzhu Ma, Dan Zhao, Jianyang Zeng 0001	Characterizing the interaction conformation between T-cell receptors and epitopes with deep learning.	Nat. Mac. Intell.	2023	DBLP DOI BibTeX RDF
21	Muhammad Attique, Tamim Alkhalifah, Fahad Alturise, Yaser Daanial Khan	DeepBCE: Evaluation of deep learning models for identification of immunogenic B-cell epitopes.	Comput. Biol. Chem.	2023	DBLP DOI BibTeX RDF
21	Arzu Mijit, Xiaona Wang, Yanlin Li, Hangwei Xu, Yingjun Chen, Weiwei Xue	Mapping synthetic binding proteins epitopes on diverse protein targets by protein structure prediction and protein-protein docking.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
21	Saurav Kumar Mishra, Prerna Priya, Gyan Prakash Rai, Rizwanul Haque, Asheesh Shanker	Coevolution based immunoinformatics approach considering variability of epitopes to combat different strains: A case study using spike protein of SARS-CoV-2.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
21	Anjali Dhall, Sumeet Patiyal, Shubham Choudhury, Shipra Jain, Kashish Narang, Gajendra P. S. Raghava	TNFepitope: A webserver for the prediction of TNF-α inducing epitopes.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
21	Jiani Chen, Swan Tan, Vasanthi Avadhanula, Leonard Moise, Pedro A. Piedra, Anne S. De Groot, Justin Bahl	Diversity and evolution of computationally predicted T cell epitopes against human respiratory syncytial virus.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
21	Shengli Zhang, Yunyun Liang, Yujie Xu, Yuanyuan Jing	TNFIPs-Net: A deep learning model based on multi-feature fusion for prediction of TNF-α inducing epitopes.	BIBM	2023	DBLP DOI BibTeX RDF
21	Ganesh Karnati, Sujitha D, Fayaz Sm	Enhancing Accuracy and Correlation Coefficients of Cancer epitopes through Machine Learning Approaches.	ICCCNT	2023	DBLP DOI BibTeX RDF
21	Hao-Dong Xu, Zhongming Zhao	NetBCE: An Interpretable Deep Neural Network for Accurate Prediction of Linear B-cell Epitopes.	Genom. Proteom. Bioinform.	2022	DBLP DOI BibTeX RDF
21	Rui Yin 0002, Xianghe Zhu, Min Zeng, Pengfei Wu, Min Li 0007, Chee Keong Kwoh 0001	A framework for predicting variable-length epitopes of human-adapted viruses using machine learning methods.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
21	Tanmaya Kumar Sahu, Prabina Kumar Meher, Nalini Kanta Choudhury, Atmakuri Ramakrishna Rao	A comparative analysis of amino acid encoding schemes for the prediction of flexible length linear B-cell epitopes.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
21	Paul R. Buckley, Chloe H. Lee, Ruichong Ma, Isaac Woodhouse, Jeongmin Woo, Vasily Tsvetkov, Dmitrii S. Shcherbinin, Agne Antanaviciute, Mikhail Shughay, Margarida Rei, Alison Simmons, Hashem Koohy	Evaluating performance of existing computational models in predicting CD8+ T cell pathogenic epitopes and cancer neoantigens.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
21	Hyunsu An, Minho Eun, Jawoon Yi, Jihwan Park	CRESSP: a comprehensive pipeline for prediction of immunopathogenic SARS-CoV-2 epitopes using structural properties of proteins.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
21	Priyank Shukla, Preeti Pandey, Bodhayan Prasad, Tony Robinson, Rituraj Purohit, Leon G. D'cruz, Murtaza M. Tambuwala, Ankur Mutreja, Jim Harkin, Taranjit Singh Rai, Elaine K. Murray, David S. Gibson, Anthony J. Bjourson	Immuno-informatics analysis predicts B and T cell consensus epitopes for designing peptide vaccine against SARS-CoV-2 with 99.82% global population coverage.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
21	Shamima Rashid, Teng Ann Ng, Chee Keong Kwoh 0001	Jupytope: computational extraction of structural properties of viral epitopes.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
21	Wajdi Alghamdi, Muhammad Attique, Ebraheem Alzahrani, Malik Zaka Ullah, Yaser Daanial Khan	LBCEPred: a machine learning model to predict linear B-cell epitopes.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
21	Pinar Cihan, Zeynep Banu Ozger	A new approach for determining SARS-CoV-2 epitopes using machine learning-based in silico methods.	Comput. Biol. Chem.	2022	DBLP DOI BibTeX RDF
21	Ofer M. Shir, Assaf Israeli, Assaf Caftory, Guy Zepko, Itai Bloch	Algorithmically-guided discovery of viral epitopes via linguistic parsing: Problem formulation and solving by soft computing.	Appl. Soft Comput.	2022	DBLP DOI BibTeX RDF
21	Ismail Shah, Sehrooz Jamil, Saira Rehmat, Hammad Ahmad Butt, Syed Shujait Ali, Muhammad Idrees, Yifei Zhan, Zahid Hussain, Shahid Ali, Muhammad Waseem, Arshad Iqbal, Sajjad Ahmad, Abbas Khan, Yanjing Wang 0003, Dong-Qing Wei	Evaluation and identification of essential therapeutic proteins and vaccinomics approach towards multi-epitopes vaccine designing against Legionella pneumophila for immune response instigation.	Comput. Biol. Medicine	2022	DBLP DOI BibTeX RDF
21	Shweta Jakhmola, Md Fulbabu Sk, Akash Chatterjee, Khushboo Jain, Parimal Kar, Hem Chandra Jha	A plausible contributor to multiple sclerosis; presentation of antigenic myelin protein epitopes by major histocompatibility complexes.	Comput. Biol. Medicine	2022	DBLP DOI BibTeX RDF
21	Israr Fatima, Sajjad Ahmad, Sumra Wajid Abbasi, Usman Ali Ashfaq, Farah Shahid, Muhammad Tahir Ul Qamar, Abdur Rehman, Khaled S. Allemailem	Designing of a multi-epitopes-based peptide vaccine against rift valley fever virus and its validation through integrated computational approaches.	Comput. Biol. Medicine	2022	DBLP DOI BibTeX RDF
21	Fahad Humayun, Yutong Cai, Abbas Khan, Syed Ali Farhan, Fatima Khan, Usman Ishrat Rana, Anum binte Qamar, Nasim Fawad, Shazia Shamas, Dongqing-Wei	Structure-guided design of multi-epitopes vaccine against variants of concern (VOCs) of SARS-CoV-2 and validation through In silico cloning and immune simulations.	Comput. Biol. Medicine	2022	DBLP DOI BibTeX RDF
21	Paul F. Zierep, Randi Vita, Nina Blazeska, Aurélien F. A. Moumbock, Jason A. Greenbaum, Bjoern Peters, Stefan Günther	Towards the prediction of non-peptidic epitopes.	PLoS Comput. Biol.	2022	DBLP DOI BibTeX RDF
21	Saravanan Vijayakumar	Harnessing Fuzzy Rule Based System for Screening Major Histocompatibility Complex Class I Peptide Epitopes from the Whole Proteome: An Implementation on the Proteome of Leishmania donovani.	J. Comput. Biol.	2022	DBLP DOI BibTeX RDF
21	Vidhu Agarwal, Akhilesh Tiwari, Pritish Varadwaj	Prediction of suitable T and B cell epitopes for eliciting immunogenic response against SARS-CoV-2 and its mutant.	Netw. Model. Anal. Health Informatics Bioinform.	2022	DBLP DOI BibTeX RDF
21	Kiran Sewsankar	Machine Learning Models of B-cell and T-cell Epitopes Using Sequence and Structure Information.		2022	RDF
21	Akash Bahai	Computational methods for characterizing viral neutralization data and predicting linear B-cell epitopes (Computergestützte Methoden zur Charakterisierung viraler Neutralisierungsdaten und Vorhersage linearer B-Zell-Epitope) (PDF / PS)		2022	DOI RDF
21	Lindsay M. W. Piel, Codie J. Durfee, Stephen N. White	Proteome-wide analysis of Coxiella burnetii for conserved T-cell epitopes with presentation across multiple host species.	BMC Bioinform.	2021	DBLP DOI BibTeX RDF
21	Guanglan Zhang, Lou Chitkushev, Lars Rønn Olsen, Derin B. Keskin, Vladimir Brusic	TANTIGEN 2.0: a knowledge base of tumor T cell antigens and epitopes.	BMC Bioinform.	2021	DBLP DOI BibTeX RDF
21	Kiran Kadam, Noor Peerzada, Rajiv Karbhal, Sangeeta Sawant, Jayaraman Valadi, Urmila Kulkarni-Kale	Antibody Class(es) Predictor for Epitopes (AbCPE): A Multi-Label Classification Algorithm.	Frontiers Bioinform.	2021	DBLP DOI BibTeX RDF
21	Jonathan Hare, David Morrison, Morten Nielsen 0001	Sampling SARS-CoV-2 Proteomes for Predicted CD8 T-Cell Epitopes as a Tool for Understanding Immunogenic Breadth and Rational Vaccine Design.	Frontiers Bioinform.	2021	DBLP DOI BibTeX RDF
21	Rhiane Moody, Kirsty L. Wilson, Jennifer C. Boer, Jessica K. Holien, Katie L. Flanagan, Anthony Jaworowski, Magdalena Plebanski	Predicted B Cell Epitopes Highlight the Potential for COVID-19 to Drive Self-Reactive Immunity.	Frontiers Bioinform.	2021	DBLP DOI BibTeX RDF
21	Dong-Gun Kim, Yoonjoo Choi, Hak-Sung Kim	Epitopes of Protein Binders Are Related to the Structural Flexibility of a Target Protein Surface.	J. Chem. Inf. Model.	2021	DBLP DOI BibTeX RDF
21	Neelam Sharma, Sumeet Patiyal, Anjali Dhall, Akshara Pande, Chakit Arora, Gajendra P. S. Raghava	AlgPred 2.0: an improved method for predicting allergenic proteins and mapping of IgE epitopes.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
21	Anna Bernasconi 0002, Luca Cilibrasi, Ruba Al Khalaf, Tommaso Alfonsi, Stefano Ceri, Pietro Pinoli, Arif Canakoglu	EpiSurf: metadata-driven search server for analyzing amino acid changes within epitopes of SARS-CoV-2 and other viral species.	Database J. Biol. Databases Curation	2021	DBLP DOI BibTeX RDF
21	Qingzhen Hou, Bas Stringer, Katharina Waury, Henriette Capel, Reza Haydarlou, Fuzhong Xue, Sanne Abeln, Jaap Heringa, K. Anton Feenstra	SeRenDIP-CE: sequence-based interface prediction for conformational epitopes.	Bioinform.	2021	DBLP DOI BibTeX RDF
21	Aline Silva da Costa, Tácio Vinício Amorim Fernandes, Murilo Lamim Bello, Theo Luiz Ferraz de Souza	Evaluation of potential MHC-I allele-specific epitopes in Zika virus proteins and the effects of mutations on peptide-MHC-I interaction studied using in silico approaches.	Comput. Biol. Chem.	2021	DBLP DOI BibTeX RDF
21	Richard A. Brualdi, Geir Dahl	Convex (0, 1)-matrices and their epitopes.	Discret. Appl. Math.	2021	DBLP DOI BibTeX RDF
21	Emmi Jokinen, Jani Huuhtanen, Satu Mustjoki, Markus Heinonen, Harri Lähdesmäki	Predicting recognition between T cell receptors and epitopes with TCRGP.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
21	Juan L. Trincado, Marina Reixachs-Solé, Judith Pérez-Granado, Tim Fugmann, Ferran Sanz, Jun Yokota, Eduardo Eyras	ISOTOPE: ISOform-guided prediction of epiTOPEs in cancer.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
21	Md. Mehedi Hasan 0002, Mst. Shamima Khatun, Hiroyuki Kurata	iLBE for Computational Identification of Linear B-cell Epitopes by Integrating Sequence and Evolutionary Features.	Genom. Proteom. Bioinform.	2020	DBLP DOI BibTeX RDF
21	Marta Gomez-Perosanz, Alvaro Ras-Carmona, Esther M. Lafuente, Pedro A. Reche	Identification of CD8+ T cell epitopes through proteasome cleavage site predictions.	BMC Bioinform.	2020	DBLP DOI BibTeX RDF
21	Sergio A. Poveda-Cuevas, Catherine Etchebest, Fernando Luís Barroso da Silva	Identification of Electrostatic Epitopes in Flavivirus by Computer Simulations: The PROCEEDpKa Method.	J. Chem. Inf. Model.	2020	DBLP DOI BibTeX RDF
21	Amit Kumar Gupta, Archit Kumar, Akanksha Rajput, Karambir Kaur, Showkat Ahmed Dar, Anamika Thakur, Kirti Megha, Manoj Kumar 0003	NipahVR: a resource of multi-targeted putative therapeutics and epitopes for the Nipah virus.	Database J. Biol. Databases Curation	2020	DBLP DOI BibTeX RDF
21	Simone Puccio, Giorgio Grillo, Arianna Consiglio, Maria Felicia Soluri, Daniele Sblattero, Diego Cotella, Claudio Santoro, Sabino Liuni, Gianluca De Bellis, Enrico Lugli, Clelia Peano, Flavio Licciulli	InteractomeSeq: a web server for the identification and profiling of domains and epitopes from phage display and next generation sequencing data.	Nucleic Acids Res.	2020	DBLP DOI BibTeX RDF
21	Ying Zhu, Bo Hu, Long Xu, Lili Yang, Congjie Wang, Siyu Zhang, Xufeng He, Tesheng Gao, Yong Guo, Changxin Huang	Tumor-Specific Nascent Nine-Peptide-Epitopes Prediction and Bioinformatics Characterization in Human Colorectal Cancer.	J. Medical Imaging Health Informatics	2020	DBLP DOI BibTeX RDF
21	Sinu Paul, Nathan P. Croft, Anthony W. Purcell, David C. Tscharke, Alessandro Sette, Morten Nielsen 0001, Bjoern Peters	Benchmarking predictions of MHC class I restricted T cell epitopes in a comprehensively studied model system.	PLoS Comput. Biol.	2020	DBLP DOI BibTeX RDF
21	Salvador Eugenio C. Caoili	Beyond B-Cell Epitopes: Curating Positive Data on Antipeptide Paratope Binding to Support Development of Computational Tools for Vaccine Design and Other Translational Applications.	BCB	2020	DBLP DOI BibTeX RDF
21	Robayet Chowdhury	Prediction of Linear Epitopes by a Machine Learning Algorithm Developed Using the Immunosignature Technology.		2020	RDF
21	Vincent Demolombe, Alexandre G. de Brevern, Franck Molina, Géraldine Lavigne, Claude Granier, Violaine Moreau	Benchmarking the PEPOP methods for mimicking discontinuous epitopes.	BMC Bioinform.	2019	DBLP DOI BibTeX RDF
21	Vincent Demolombe, Alexandre G. de Brevern, Liza Figueredo Felicori, Christophe Nguyen, Ricardo Andrez Machado de Avila, Lionel Valera, Bénédicte Jardin-Watelet, Géraldine Lavigne, Aurélien Lebreton, Franck Molina, Violaine Moreau	PEPOP 2.0: new approaches to mimic non-continuous epitopes.	BMC Bioinform.	2019	DBLP DOI BibTeX RDF
21	Fabio Dall'antonia, Walter Keller	SPADE web service for prediction of allergen IgE epitopes.	Nucleic Acids Res.	2019	DBLP DOI BibTeX RDF
21	Georcki Ropón-Palacios, Manuel E. Chenet-Zuta, Kewin Otazu, Gustavo E. Olivos-Ramirez, Ihosvany Camps	Novel multi-epitope protein containing conserved epitopes from different Leishmania species as potential vaccine candidate: Integrated immunoinformatics and molecular dynamics approach.	Comput. Biol. Chem.	2019	DBLP DOI BibTeX RDF
21	Hongjun Bai, Yifan Li 0008, Nelson Michael, Merlin L. Robb, Morgane Rolland	The breadth of HIV-1 neutralizing antibodies depends on the conservation of key sites in their epitopes.	PLoS Comput. Biol.	2019	DBLP DOI BibTeX RDF
21	Gopinath Samykannu, Princy Vijayababu, Christian Bharathi Antonyraj, Perumal Perumal, Sundarabaalaji Narayanan, Syed Ibrahim Basheer Ahamed, Jeyakumar Natarajan	In Silico Characterization of B Cell and T Cell Epitopes for Subunit Vaccine Design of Salmonella typhi PgtE: A Molecular Dynamics Simulation Approach.	J. Comput. Biol.	2019	DBLP DOI BibTeX RDF
21	Qian Xie, Xiaoyan He, Fangji Yang, Xuling Liu, Ying Li, Yujing Liu, ZhengMeng Yang, Jianhai Yu, Bao Zhang, Wei Zhao	Analysis of the Genome Sequence and Prediction of B-Cell Epitopes of the Envelope Protein of Middle East Respiratory Syndrome-Coronavirus.	IEEE ACM Trans. Comput. Biol. Bioinform.	2018	DBLP DOI BibTeX RDF
21	Sandeep Kumar Dhanda, Randi Vita, Brendan Ha, Alba Grifoni, Bjoern Peters, Alessandro Sette	ImmunomeBrowser: a tool to aggregate and visualize complex and heterogeneous epitopes in reference proteins.	Bioinform.	2018	DBLP DOI BibTeX RDF
21	Liang Zhao, Shaogui Wu, Jiawen Jiang, Wencui Li, Jie Luo, Jinyan Li 0001	Novel overlapping subgraph clustering for the detection of antigen epitopes.	Bioinform.	2018	DBLP DOI BibTeX RDF
21	Mohammad M. Pourseif, Gholamali Moghaddam, Behrouz Naghili, Nazli Saeedi, Sepideh Parvizpour, Ahmad Nematollahi, Yadollah Omidi	A novel in silico minigene vaccine based on CD4+ T-helper and B-cell epitopes of EG95 isolates for vaccination against cystic echinococcosis.	Comput. Biol. Chem.	2018	DBLP DOI BibTeX RDF
21	Smriti Mishra, Manish Manish	Studies on computational grafting of malarial epitopes in serum albumin.	Comput. Biol. Medicine	2018	DBLP DOI BibTeX RDF
21	Weilong Zhao, Xinwei Sher	Systematically benchmarking peptide-MHC binding predictors: From synthetic to naturally processed epitopes.	PLoS Comput. Biol.	2018	DBLP DOI BibTeX RDF
21	Jing Ren, Jiangning Song, John T. Ellis, Jinyan Li 0001	Staged heterogeneity learning to identify conformational B-cell epitopes from antigen sequences.	BMC Genom.	2017	DBLP DOI BibTeX RDF
21	Georgios A. Dalkas, Marianne Rooman	SEPIa, a knowledge-driven algorithm for predicting conformational B-cell epitopes from the amino acid sequence.	BMC Bioinform.	2017	DBLP DOI BibTeX RDF
21	Martin Closter Jespersen, Bjoern Peters, Morten Nielsen 0001, Paolo Marcatili	BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes.	Nucleic Acids Res.	2017	DBLP DOI BibTeX RDF
21	Wadood Abdul, Aamir Mehmood, Huma Khan, Muhammad Ilyas 0003, Ayaz Ahmad, Mohammed Alarjah, Tareq Abu-Izneid	Epitopes based drug design for dengue virus envelope protein: A computational approach.	Comput. Biol. Chem.	2017	DBLP DOI BibTeX RDF
21	Ho Won Lee, Da Som Kim, Jong Hyun Lee, Hyuck Gi Kwon, Ga-Young Park, Ji-Young Ahn, Ok Chan Jeong	Yeast surface displayed porcine epidemic diarrhea (PED) viral epitopes and microfluidic encapsulation in Ca-Alginate beads for oral vaccination.	MHS	2017	DBLP DOI BibTeX RDF
21	Rob Patro, Raquel Norel, Robert J. Prill, Julio Saez-Rodriguez, Peter Lorenz, Felix Steinbeck, Bjoern Ziems, Mitja Lustrek, Nicola Barbarini, Alessandra Tiengo, Riccardo Bellazzi, Hans-Jürgen Thiesen, Gustavo Stolovitzky, Carl Kingsford	A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin.	BMC Bioinform.	2016	DBLP DOI BibTeX RDF
21	Mahesha N. Nadugala, Prasad H. Premaratne, Charitha L. Goonasekara	Systematic Bioinformatic Approach for Prediction of Linear B-Cell Epitopes on Dengue E and prM Protein.	Adv. Bioinformatics	2016	DBLP DOI BibTeX RDF
21	Faruku Bande, Siti Suri Arshad, Mohd Hair Bejo, Saeid Kadkhodaei, Abdul Rahman Omar	Prediction and In Silico Identification of Novel B-Cells and T-Cells Epitopes in the S1-Spike Glycoprotein of M41 and CR88 (793/B) Infectious Bronchitis Virus Serotypes for Application in Peptide Vaccines.	Adv. Bioinformatics	2016	DBLP DOI BibTeX RDF
21	Md. Masud Parvege, Monzilur Rahman, Yead Morshed Nibir, Mohammad Shahnoor Hossain	Two highly similar LAEDDTNAQKT and LTDKIGTEI epitopes in G glycoprotein may be useful for effective epitope based vaccine design against pathogenic Henipavirus.	Comput. Biol. Chem.	2016	DBLP DOI BibTeX RDF
21	Lies Boelen, Patrick K. O'Neill, Kathryn J. Quigley, Catherine J. Reynolds, Bernard Maillere, John H. Robinson, Ganjana Lertmemongkolchai, Daniel M. Altmann, Rosemary J. Boyton, Becca Asquith	BIITE: A Tool to Determine HLA Class II Epitopes from T Cell ELISpot Data.	PLoS Comput. Biol.	2016	DBLP DOI BibTeX RDF
21	Davorka R. Jandrlic, Goran M. Lazic, Nenad S. Mitic, Mirjana D. Pavlovic	Software tools for simultaneous data visualization and T cell epitopes and disorder prediction in proteins.	J. Biomed. Informatics	2016	DBLP DOI BibTeX RDF
21	Mahsa Taherzadeh, Abolghasem Esmaeili, Mohamad Reza Ganjalikhany	In silico vaccine design against type 1 diabetes based on molecular modeling of coxsackievirus B4 epitopes.	Netw. Model. Anal. Health Informatics Bioinform.	2016	DBLP DOI BibTeX RDF