Search results for "gene-duplication"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
130	Michael R. Fellows, Michael T. Hallett, Ulrike Stege	On the Multiple Gene Duplication Problem.	ISAAC	1998	DBLP DOI BibTeX RDF
98	Shiquan Wu, Xun Gu	Gene Network: Model, Dynamics and Simulation.	COCOON	2005	DBLP DOI BibTeX RDF
97	Mukul S. Bansal, Oliver Eulenstein, André Wehe	The Gene-Duplication Problem: Near-Linear Time Algorithms for NNI-Based Local Searches.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	Computational phylogenetics, {tt NNI}, local search, gene-duplication, supertrees
91	Karlheinz Schmitt	Using gene deletion and gene duplication in evolution strategies.	GECCO	2005	DBLP DOI BibTeX RDF	self-adaptation, evolution strategy, gene duplication
84	Mukul S. Bansal, Oliver Eulenstein	An Omega(n^2/ log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	Algorithms, Computational Biology, Phylogenetics, Gene Duplication, Supertrees
82	Mengxiang Tang, Michael S. Waterman, Shibu Yooseph	Zinc finger gene clusters and tandem gene duplication.	RECOMB	2001	DBLP DOI BibTeX RDF
81	J. Gordon Burleigh, Mukul S. Bansal, André Wehe, Oliver Eulenstein	Locating Multiple Gene Duplications through Reconciled Trees.	RECOMB	2008	DBLP DOI BibTeX RDF
70	Ulrike Stege	Gene Trees and Species Trees: The Gene-Duplication Problem in Fixed-Parameter Tractable.	WADS	1999	DBLP DOI BibTeX RDF
68	Pawel Górecki 0001, Jerzy Tiuryn	On the Structure of Reconciliations.	Comparative Genomics	2004	DBLP DOI BibTeX RDF	gene loss, computational biology, phylogenetic tree, reconciliation, gene duplication, molecular evolution
66	Mukul S. Bansal, Oliver Eulenstein	The Gene-Duplication Problem: Near-Linear Time Algorithms for NNI Based Local Searches.	ISBRA	2008	DBLP DOI BibTeX RDF
65	Dannie Durand, Bjarni V. Halldórsson, Benjamin Vernot	A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction.	RECOMB	2005	DBLP DOI BibTeX RDF
63	Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein, André Wehe	Heuristics for the Gene-Duplication Problem: A Theta ( n ) Speed-Up for the Local Search.	RECOMB	2007	DBLP DOI BibTeX RDF
58	Mukul S. Bansal, Oliver Eulenstein	An Omega(n2/log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem.	WABI	2007	DBLP DOI BibTeX RDF
56	Lars Arvestad, Jens Lagergren, Bengt Sennblad	The gene evolution model and computing its associated probabilities.	J. ACM	2009	DBLP DOI BibTeX RDF	probability, evolution, Phylogeny, duplication, reconciliation, loss, gene
53	Dannie Durand, David Sankoff	Tests for gene clustering.	RECOMB	2002	DBLP DOI BibTeX RDF
48	Mark J. Lawson, Lenwood S. Heath, Naren Ramakrishnan, Liqing Zhang 0002	Using Cost-Sensitive Learning to Determine Gene Conversions.	ICIC (2)	2008	DBLP DOI BibTeX RDF
48	Kevin C. Chen, Dannie Durand, Martin Farach-Colton	Notung: dating gene duplications using gene family trees.	RECOMB	2000	DBLP DOI BibTeX RDF
46	Wen-Chieh Chang 0002, Oliver Eulenstein	Reconciling Gene Trees with Apparent Polytomies.	COCOON	2006	DBLP DOI BibTeX RDF
43	Miklós Csürös, István Miklós	A Probabilistic Model for Gene Content Evolution with Duplication, Loss, and Horizontal Transfer.	RECOMB	2006	DBLP DOI BibTeX RDF
41	Behshad Behzadi, Martin Vingron	An Improved Algorithm for the Macro-evolutionary Phylogeny Problem.	CPM	2006	DBLP DOI BibTeX RDF
41	Jerzy Tiuryn, Ryszard Rudnicki, Damian Wójtowicz	A Case Study of Genome Evolution: From Continuous to Discrete Time Model.	MFCS	2004	DBLP DOI BibTeX RDF
39	Joseph F. Hart, Thomas S. Ray, Katsunori Shimohara	Evolution of New Tissues thruogh Gene Duplication and Divergence In Multihreaded Digital Organisms.	ICME	2001	DBLP DOI BibTeX RDF
33	Barbara R. Holland, Glenn Conner, Katharina T. Huber, Vincent Moulton	Imputing Supertrees and Supernetworks from Quartets.	WABI	2006	DBLP DOI BibTeX RDF
31	Christopher R. Stephens, Riccardo Poli	Coarse-Grained Dynamics for Generalized Recombination.	IEEE Trans. Evol. Comput.	2007	DBLP DOI BibTeX RDF
31	Hong Liu, Li Li, Asher Zilberstein, Chang S. Hahn	Segmental Duplications Containing Tandem Repeated Genes Encoding Putative Deubiquitinating Enzymes.	CSB	2004	DBLP DOI BibTeX RDF	segmental duplication, deubiquitinating enzyme
28	Prottoy Saha, Md Shamiul Islam, Tasnim Rahman, Adiba Shaira, Kazi Noshin, Rezwana Reaz, Md. Shamsuzzoha Bayzid	Gene Tree Parsimony in the Presence of Gene Duplication, Loss, and Incomplete Lineage Sorting.	RECOMB-CG	2024	DBLP DOI BibTeX RDF
28	Md. Shamsuzzoha Bayzid	Inferring Optimal Species Trees in the Presence of Gene Duplication and Loss: Beyond Rooted Gene Trees.	J. Comput. Biol.	2023	DBLP DOI BibTeX RDF
28	Yuridia S. Posadas-García, Carlos Espinosa-Soto	Early effects of gene duplication on the robustness and phenotypic variability of gene regulatory networks.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
28	Juris Viksna, David R. Gilbert	Gene Duplication Models and Reconstruction of Gene Regulatory Network Evolution from Network Structure.	Balt. J. Mod. Comput.	2016	DBLP DOI BibTeX RDF
28	Pawel Górecki 0001, Oliver Eulenstein	Algorithms: simultaneous error-correction and rooting for gene tree reconciliation and the gene duplication problem.	BMC Bioinform.	2012	DBLP DOI BibTeX RDF
28	Damian Wójtowicz, Jerzy Tiuryn	Evolution of Gene Families Based on Gene Duplication, Loss, Accumulated Change, and Innovation.	J. Comput. Biol.	2007	DBLP DOI BibTeX RDF
28	Mengxiang Tang, Michael S. Waterman, Shibu Yooseph	Zinc Finger Gene Clusters and Tandem Gene Duplication.	J. Comput. Biol.	2002	DBLP DOI BibTeX RDF
28	Christian M. Zmasek, Sean R. Eddy	A simple algorithm to infer gene duplication and speciation events on a gene tree.	Bioinform.	2001	DBLP DOI BibTeX RDF
27	Xin Chen 0037, Jie Zheng 0002, Zheng Fu, Peng Nan, Yang Zhong, Stefano Lonardi, Tao Jiang 0001	Assignment of Orthologous Genes via Genome Rearrangement.	IEEE ACM Trans. Comput. Biol. Bioinform.	2005	DBLP DOI BibTeX RDF	Ortholog, paralog, reversal, comparative genomics, genome rearrangement, gene duplication
27	Michael T. Hallett, Jens Lagergren, Ali Tofigh	Simultaneous identification of duplications and lateral transfers.	RECOMB	2004	DBLP DOI BibTeX RDF	gene loss, lateral gene transfer, gene duplication
23	Damian Wójtowicz, Jerzy Tiuryn	On Genome Evolution with Accumulated Change and Innovation.	Comparative Genomics	2006	DBLP DOI BibTeX RDF
23	Damian Wójtowicz, Jerzy Tiuryn	On Genome Evolution with Innovation.	MFCS	2006	DBLP DOI BibTeX RDF
21	Zheng Fu, Xin Chen 0037, Vladimir Vacic, Peng Nan, Yang Zhong, Tao Jiang 0001	A Parsimony Approach to Genome-Wide Ortholog Assignment.	RECOMB	2006	DBLP DOI BibTeX RDF
21	Duoyuan Chen, Taikui Zhang, Yamao Chen, Hong Ma, Ji Qi	Tree2GD: a phylogenomic method to detect large-scale gene duplication events.	Bioinform.	2022	DBLP DOI BibTeX RDF
21	James Willson, Mrinmoy Saha Roddur, Tandy J. Warnow	Comparing Methods for Species Tree Estimation with Gene Duplication and Loss.	AlCoB	2021	DBLP DOI BibTeX RDF
21	Erin K. Molloy, Tandy J. Warnow	FastMulRFS: fast and accurate species tree estimation under generic gene duplication and loss models.	Bioinform.	2020	DBLP DOI BibTeX RDF
21	Brandon Legried, Erin K. Molloy, Tandy J. Warnow, Sébastien Roch	Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss.	RECOMB	2020	DBLP DOI BibTeX RDF
21	Tiratha Raj Singh, Ankush Bansal	Gene Duplication and Speciation.	Encyclopedia of Bioinformatics and Computational Biology (3)	2019	DBLP DOI BibTeX RDF
21	Pawel Górecki 0001, Agnieszka Mykowiecka 0002, Jaroslaw Paszek, Oliver Eulenstein	Mathematical properties of the gene duplication cost.	Discret. Appl. Math.	2019	DBLP DOI BibTeX RDF
21	Peng Du, Huw A. Ogilvie, Luay Nakhleh	Unifying Gene Duplication, Loss, and Coalescence on Phylogenetic Networks.	ISBRA	2019	DBLP DOI BibTeX RDF
21	Nicholas Livingston, Ben K. Tidswell, Meghan Willcoxon, Theresa Law, Gabriel Dell'Accio, Mackenzie Little, John H. Long Jr., Josh C. Bongard, Kenneth R. Livingston	Gene Duplication, Modularity, and the Evolution of Intelligence in Simulated and Real Robots.	CogSci	2018	DBLP BibTeX RDF
21	Alexey Markin, Venkata Sai Krishna Teja Vadali, Oliver Eulenstein	Solving the Gene Duplication Feasibility Problem in Linear Time.	COCOON	2018	DBLP DOI BibTeX RDF
21	Jennifer Rogers, Andrew Fishberg, Nora Youngs, Yi-Chieh Wu	Reconciliation feasibility in the presence of gene duplication, loss, and coalescence with multiple individuals per species.	BMC Bioinform.	2017	DBLP DOI BibTeX RDF
21	Jucheol Moon, Harris T. Lin, Oliver Eulenstein	Consensus properties and their large-scale applications for the gene duplication problem.	J. Bioinform. Comput. Biol.	2016	DBLP DOI BibTeX RDF
21	Agnieszka Mykowiecka 0002, Pawel Górecki 0001	Bootstrapping Algorithms for Gene Duplication and Speciation Events.	AlCoB	2016	DBLP DOI BibTeX RDF
21	Pawel Górecki 0001, Jaroslaw Paszek, Agnieszka Mykowiecka 0002	Mean Values of Gene Duplication and Loss Cost Functions.	ISBRA	2016	DBLP DOI BibTeX RDF
21	Yu Zheng 0018, Louxin Zhang	Effect of Incomplete Lineage SortingOn Tree-Reconciliation-Based Inferenceof Gene Duplication.	IEEE ACM Trans. Comput. Biol. Bioinform.	2014	DBLP DOI BibTeX RDF
21	Alex N. Nguyen Ba, Bob Strome, Jun Jie Hua, Jonathan Desmond, Isabelle Gagnon-Arsenault, Eric L. Weiss, Christian R. Landry, Alan M. Moses	Detecting Functional Divergence after Gene Duplication through Evolutionary Changes in Posttranslational Regulatory Sequences.	PLoS Comput. Biol.	2014	DBLP DOI BibTeX RDF
21	Dimitrios-Georgios Kontopoulos, Nicholas M. Glykos	Pinda: A Web service for detection and analysis of intraspecies gene duplication events.	Comput. Methods Programs Biomed.	2013	DBLP DOI BibTeX RDF
21	Md. Shamsuzzoha Bayzid, Siavash Mirarab, Tandy J. Warnow	Inferring Optimal Species Trees Under Gene Duplication and Loss.	Pacific Symposium on Biocomputing	2013	DBLP BibTeX RDF
21	Yu Zheng 0018, Louxin Zhang	Effect of Incomplete Lineage Sorting on Tree-Reconciliation-Based Inference of Gene Duplication.	ISBRA	2013	DBLP DOI BibTeX RDF
21	Mukul S. Bansal, Eric J. Alm, Manolis Kellis	Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss.	Bioinform.	2012	DBLP DOI BibTeX RDF
21	Marc Ebner	Evolving concepts using gene duplication.	CompIMAGE	2012	DBLP DOI BibTeX RDF
21	Cheng-Wei Luo, Ming-Chiang Chen, Yi-Ching Chen, Roger W. L. Yang, Hsiao-Fei Liu, Kun-Mao Chao	Linear-Time Algorithms for the Multiple Gene Duplication Problems.	IEEE ACM Trans. Comput. Biol. Bioinform.	2011	DBLP DOI BibTeX RDF
21	Mukul S. Bansal, Ron Shamir	A Note on the Fixed Parameter Tractability of the Gene-Duplication Problem.	IEEE ACM Trans. Comput. Biol. Bioinform.	2011	DBLP DOI BibTeX RDF
21	Wen-Chieh Chang 0002, J. Gordon Burleigh, David Fernández-Baca, Oliver Eulenstein	An ILP solution for the gene duplication problem.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
21	Jaime Huerta-Cepas, Joaquín Dopazo, Martijn A. Huynen, Toni Gabaldón	Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication.	Briefings Bioinform.	2011	DBLP DOI BibTeX RDF
21	Joseph Esfandiar Hannon Bozorgmehr	Is gene duplication a viable explanation for the origination of biological information and complexity?	Complex.	2011	DBLP DOI BibTeX RDF
21	Ruchi Chaudhary, J. Gordon Burleigh, Oliver Eulenstein	Algorithms for Rapid Error Correction for the Gene Duplication Problem.	ISBRA	2011	DBLP DOI BibTeX RDF
21	André Wehe, Wen-Chieh Chang 0002, Oliver Eulenstein, Srinivas Aluru	A scalable parallelization of the gene duplication problem.	J. Parallel Distributed Comput.	2010	DBLP DOI BibTeX RDF
21	Aïda Ouangraoua, Krister M. Swenson, Cédric Chauve	An Approximation Algorithm for Computing a Parsimonious First Speciation in the Gene Duplication Model.	RECOMB-CG	2010	DBLP DOI BibTeX RDF
21	André Wehe, John Gordon Burleigh	Scaling the Gene Duplication Problem Towards the Tree of Life.	BICoB	2010	DBLP BibTeX RDF
21	J. Gordon Burleigh, Mukul S. Bansal, Oliver Eulenstein, Todd J. Vision	Inferring species trees from gene duplication episodes.	BCB	2010	DBLP DOI BibTeX RDF
21	Huang-Wen Chen	Machine Learning Approaches to Gene Duplication and Transcription Regulation.		2010	RDF
21	Christian Frech, Michael Kommenda, Viktoria Dorfer, Thomas Kern, Helmut Hintner, Johann W. Bauer, Kamil Önder	Improved homology-driven computational validation of protein-protein interactions motivated by the evolutionary gene duplication and divergence hypothesis.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
21	Cédric Chauve, Aïda Ouangraoua	A 3-approximation algorithm for computing a parsimonious first speciation in the gene duplication model	CoRR	2009	DBLP BibTeX RDF
21	John Gordon Burleigh, Mukul S. Bansal, André Wehe, Oliver Eulenstein	Locating Large-Scale Gene Duplication Events through Reconciled Trees: Implications for Identifying Ancient Polyploidy Events in Plants.	J. Comput. Biol.	2009	DBLP DOI BibTeX RDF
21	Wan Kyu Kim, Edward M. Marcotte	Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence.	PLoS Comput. Biol.	2008	DBLP DOI BibTeX RDF
21	Mukul S. Bansal, Oliver Eulenstein	The multiple gene duplication problem revisited.	ISMB	2008	DBLP DOI BibTeX RDF
21	David Talavera, Christine Vogel, Modesto Orozco, Sarah A. Teichmann, Xavier de la Cruz	The (In)dependence of Alternative Splicing and Gene Duplication.	PLoS Comput. Biol.	2007	DBLP DOI BibTeX RDF
21	Xun Gu	Mathematical Modeling for Functional Divergence after Gene Duplication.	J. Comput. Biol.	2001	DBLP DOI BibTeX RDF
21	Hidefumi Sawai, Susurnu Adachi	Genetic algorithm inspired by gene duplication.	CEC	1999	DBLP DOI BibTeX RDF
21	Fredj Tekaia	Whole genome camparisons: gene duplication and consenration in systematically sequenced organisms.	German Conference on Bioinformatics	1997	DBLP BibTeX RDF
21	John R. Koza	Gene Duplication to Enable Genetic Programming to Concurrently Evolve Both the Architecture and Work-Performing Steps of a Computer Program.	IJCAI (1)	1995	DBLP BibTeX RDF
21	Ken-nosuke Wada, Yoshiko Wada, Hirofumi Doi, Shin'ichi Tanaka, Mitsuru Furusawa	Evolutionary System: Structures and Functions, Disparity Hypothesis and Gene Duplication.	International Conference on Evolutionary Computation	1994	DBLP DOI BibTeX RDF
18	María J. Casas, Francisco J. Vico	On the performance of some bioinspired genetic operators in complex structures evolution.	GECCO	2009	DBLP DOI BibTeX RDF	bioinspired genetic operators, bracketed 0l-systems, developmental methods, l-systems evolution, indirect encoding, artificial ontogeny
18	Carl Zimmer	An Outsider's View of the Genome.	RECOMB	2006	DBLP DOI BibTeX RDF
18	Riccardo Poli, Christopher R. Stephens	Theoretical analysis of generalised recombination.	Congress on Evolutionary Computation	2005	DBLP DOI BibTeX RDF
18	Aaron E. Darling, Bob Mau, Mark Craven, Nicole T. Perna	Multiple Alignment of Rearranged Genomes.	CSB	2004	DBLP DOI BibTeX RDF
18	Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi	Reconciling Gene Trees to a Species Tree.	CIAC	2003	DBLP DOI BibTeX RDF
13	Stefan Grünewald, Vincent Moulton	Maximum Parsimony for Tree Mixtures.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	Applications, Biology and genetics
13	Liguo Yu, Srini Ramaswamy, John Bush	Symbiosis and Software Evolvability.	IT Prof.	2008	DBLP DOI BibTeX RDF
13	Tao Jiang 0001	A Combinatorial Approach to Genome-Wide Ortholog Assignment: Beyond Sequence Similarity Search.	CPM	2007	DBLP DOI BibTeX RDF
13	Christopher R. Stephens, Riccardo Poli	Coarse graining in an evolutionary algorithm with recombination, duplication and inversion.	Congress on Evolutionary Computation	2005	DBLP DOI BibTeX RDF
13	William B. Langdon	Global Distributed Evolution of L-Systems Fractals.	EuroGP	2004	DBLP DOI BibTeX RDF
13	Roland Olsson 0001	How to Invent Functions.	EuroGP	1999	DBLP DOI BibTeX RDF
13	Michael R. Fellows, Michael T. Hallett, Chantal Korostensky, Ulrike Stege	Analogs and Duals of the MAST Problem for Sequences and Trees.	ESA	1998	DBLP DOI BibTeX RDF