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Publication years (Num. hits)
1996-2003 (16) 2004-2005 (17) 2006-2007 (24) 2008 (23) 2009 (24) 2010 (21) 2011 (28) 2012 (25) 2013 (21) 2014 (24) 2015 (22) 2016 (17) 2017 (27) 2018 (23) 2019 (19) 2020 (21) 2021 (19) 2022 (19) 2023 (28) 2024 (3)
Publication types (Num. hits)
article(319) book(2) incollection(1) inproceedings(86) phdthesis(13)
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Results
Found 421 publication records. Showing 421 according to the selection in the facets
Hits ? Authors Title Venue Year Link Author keywords
62Benjarath Phoophakdee, Mohammed J. Zaki Genome-scale disk-based suffix tree indexing. Search on Bibsonomy SIGMOD Conference The full citation details ... 2007 DBLP  DOI  BibTeX  RDF disk-based, genome-scale, sequence indexing, suffix tree, external memory
60Xinghua Shi, Rick Stevens SWARM: a scientific workflow for supporting bayesian approaches to improve metabolic models. Search on Bibsonomy CLADE The full citation details ... 2008 DBLP  DOI  BibTeX  RDF metabolic models, scientific workflow, bayesian approaches
55José P. Pinto, Oscar Días, Anália Lourenço, Sónia Carneiro, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha 0001 Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis. Search on Bibsonomy IWPACBB The full citation details ... 2008 DBLP  DOI  BibTeX  RDF Genome-scale model reconstruction, Zymomonas mobillis, data integration, data quality
41Yun Zhang 0013, Faisal N. Abu-Khzam, Nicole E. Baldwin, Elissa J. Chesler, Michael A. Langston, Nagiza F. Samatova Genome-Scale Computational Approaches to Memory-Intensive Applications in Systems Biology. Search on Bibsonomy SC The full citation details ... 2005 DBLP  DOI  BibTeX  RDF
38Marcin Imielinski, Niels Klitgord, Calin Belta Investigating the genomic basis of metabolic robustness through in silico flux analysis. Search on Bibsonomy CDC The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
38Zheng Fu, Xin Chen 0037, Vladimir Vacic, Peng Nan, Yang Zhong, Tao Jiang 0001 A Parsimony Approach to Genome-Wide Ortholog Assignment. Search on Bibsonomy RECOMB The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
37Zemin Ning, Mario Cáccamo, James C. Mullikin ssahaSNP A Polymorphism Detection Tool on a Whole Genome Scale. Search on Bibsonomy CSB Workshops The full citation details ... 2005 DBLP  DOI  BibTeX  RDF
36Xinghua Shi, Rick L. Stevens A Bayesian Approach to High-Throughput Biological Model Generation. Search on Bibsonomy BICoB The full citation details ... 2009 DBLP  DOI  BibTeX  RDF
31Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang 0008, Inna Vokler, Philip F. LoCascio, Dong Xu 0002, Ying Xu 0001 A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale. Search on Bibsonomy BIBE The full citation details ... 2003 DBLP  DOI  BibTeX  RDF
31Tao Jiang 0001 A Combinatorial Approach to Genome-Wide Ortholog Assignment: Beyond Sequence Similarity Search. Search on Bibsonomy CPM The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
31Xin Chen 0037, Jie Zheng 0002, Zheng Fu, Peng Nan, Yang Zhong, Stefano Lonardi, Tao Jiang 0001 Assignment of Orthologous Genes via Genome Rearrangement. Search on Bibsonomy IEEE ACM Trans. Comput. Biol. Bioinform. The full citation details ... 2005 DBLP  DOI  BibTeX  RDF Ortholog, paralog, reversal, comparative genomics, genome rearrangement, gene duplication
23Meili Chen, Yingke Ma, Song Wu, Xinchang Zheng, Hongen Kang, Jian Sang, Xingjian Xu, Lili Hao, Zhaohua Li, Zheng Gong, Jing-Fa Xiao, Zhang Zhang 0002, Wenming Zhao, Yiming Bao Genome Warehouse: A Public Repository Housing Genome-scale Data. Search on Bibsonomy Genom. Proteom. Bioinform. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
23Giancarlo Croce Towards a genome-scale coevolutionary analysis. (Vers une analyse co-évolutive à l'échelle du génome). Search on Bibsonomy 2019   RDF
23Risa Kawaguchi, Hisanori Kiryu Parallel computation of genome-scale RNA secondary structure to detect structural constraints on human genome. Search on Bibsonomy BMC Bioinform. The full citation details ... 2016 DBLP  DOI  BibTeX  RDF
23John W. Nicol, Gregg A. Helt, Steven G. Blanchard Jr., Archana Raja, Ann E. Loraine The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets. Search on Bibsonomy Bioinform. The full citation details ... 2009 DBLP  DOI  BibTeX  RDF
22Nagiza F. Samatova, Al Geist, George Ostrouchov, Anatoli V. Melechko Parallel Out-of-Core Algorithm for Genome-Scale Enumeration of Metabolic Systemic Pathways. Search on Bibsonomy IPDPS The full citation details ... 2002 DBLP  DOI  BibTeX  RDF
20Margaret J. Eppstein, Paul Haake Very large scale ReliefF for genome-wide association analysis. Search on Bibsonomy CIBCB The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
18Adrianto Wirawan, Bertil Schmidt Parallel Discovery of Transcription Factor Binding Sites. Search on Bibsonomy APCCAS The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
17Bin Du, Laurence Yang 0001, Colton J. Lloyd, Xin Fang, Bernhard O. Palsson Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2019 DBLP  DOI  BibTeX  RDF
16Anna V. Anagnostopoulos, Judith A. Blake, Carol J. Bult, Martin Ringwald, Joel E. Richardson, James A. Kadin, Janan T. Eppig Using bio-ontologies as data annotation, integration & analytical tools at the Mouse Genome Informatics resource. Search on Bibsonomy BIBE The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
16Tsai-Hung Fan, Shufen Lee, Hsueh-I Lu, Tsung-Shan Tsou, Tsai-Cheng Wang, Adam Yao An Optimal Algorithm for Maximum-Sum Segment and Its Application in Bioinformatics Extended Abstract. Search on Bibsonomy CIAA The full citation details ... 2003 DBLP  DOI  BibTeX  RDF
13Fernando Cruz, João Capela, Eugénio C. Ferreira, Miguel Rocha 0001, Oscar Días BioISO: An Objective-Oriented Application for Assisting the Curation of Genome-Scale Metabolic Models. Search on Bibsonomy IEEE ACM Trans. Comput. Biol. Bioinform. The full citation details ... 2024 DBLP  DOI  BibTeX  RDF
13Patrick E. Gelbach, Handan Cetin, Stacey D. Finley Flux sampling in genome-scale metabolic modeling of microbial communities. Search on Bibsonomy BMC Bioinform. The full citation details ... 2024 DBLP  DOI  BibTeX  RDF
13Juliette Cooke, Maxime Delmas, Cecilia Wieder, Pablo Rodríguez-Mier, Clément Frainay, Florence Vinson, Timothy M. D. Ebbels, Nathalie Poupin, Fabien Jourdan Genome scale metabolic network modelling for metabolic profile predictions. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2024 DBLP  DOI  BibTeX  RDF
13Takeyuki Tamura MetNetComp: Database for Minimal and Maximal Gene-Deletion Strategies for Growth-Coupled Production of Genome-Scale Metabolic Networks. Search on Bibsonomy IEEE ACM Trans. Comput. Biol. Bioinform. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Feiran Li, Yu Chen, Johan Gustafsson, Hao Wang, Yi Wang, Chong Zhang, Xinhui Xing Genome-scale metabolic models applied for human health and biopharmaceutical engineering. Search on Bibsonomy Quant. Biol. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Huan Du, Meng Li, Yang Liu Towards applications of genome-scale metabolic model-based approaches in designing synthetic microbial communities. Search on Bibsonomy Quant. Biol. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Thummarat Paklao, Apichat Suratanee, Kitiporn Plaimas ICON-GEMs: integration of co-expression network in genome-scale metabolic models, shedding light through systems biology. Search on Bibsonomy BMC Bioinform. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Jakob P. Pettersen, Sandra Castillo, Paula Jouhten, Eivind Almaas Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts. Search on Bibsonomy BMC Bioinform. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Enes Fahri Tezcan, Yigit Demirtas, Zeynep Petek Cakar, Kutlu Ö. Ülgen Comprehensive genome-scale metabolic model of the human pathogen Cryptococcus neoformans: A platform for understanding pathogen metabolism and identifying new drug targets. Search on Bibsonomy Frontiers Bioinform. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Maxim Zvyagin, Alexander Brace, Kyle Hippe, Yuntian Deng, Bin Zhang, Cindy Orozco Bohorquez, Austin Clyde, Bharat Kale, Danilo Perez-Rivera, Heng Ma, Carla M. Mann, Michael W. Irvin, Defne G. Ozgulbas, Natalia Vassilieva, J. Gregory Pauloski, Logan T. Ward, Valérie Hayot-Sasson, Murali Emani, Sam Foreman, Zhen Xie, Diangen Lin, Maulik Shukla, Weili Nie, Josh Romero, Christian Dallago, Arash Vahdat, Chaowei Xiao, Thomas Gibbs, Ian T. Foster, James J. Davis 0002, Michael E. Papka, Thomas S. Brettin, Rick Stevens, Anima Anandkumar, Venkatram Vishwanath, Arvind Ramanathan GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics. Search on Bibsonomy Int. J. High Perform. Comput. Appl. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Gaofei Jiang, Jiaxuan Zhang, Yaozhong Zhang, Xinrun Yang, Tingting Li, Ningqi Wang, Xingjian Chen, Fang-Jie Zhao, Zhong Wei, Yangchun Xu, Qirong Shen, Wei Xue DCiPatho: deep cross-fusion networks for genome scale identification of pathogens. Search on Bibsonomy Briefings Bioinform. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Elena Lucy Carter, Chrystala Constantinidou, Mohammad Tauqeer Alam Applications of genome-scale metabolic models to investigate microbial metabolic adaptations in response to genetic or environmental perturbations. Search on Bibsonomy Briefings Bioinform. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Alexandru Oarga, Bridget Bannerman, Jorge Júlvez CONTRABASS: exploiting flux constraints in genome-scale models for the detection of vulnerabilities. Search on Bibsonomy Bioinform. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Pooya Borzou, Jafar Ghaisari, Iman Izadi, Yasin Eshraghi, Yousof Gheisari A novel strategy for dynamic modeling of genome-scale interaction networks. Search on Bibsonomy Bioinform. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Lun Ai 0001, Shi-Shun Liang, Wang-Zhou Dai, Liam Hallett, Stephen H. Muggleton, Geoff S. Baldwin Human Comprehensible Active Learning of Genome-Scale Metabolic Networks. Search on Bibsonomy CoRR The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Ashka Shah, Arvind Ramanathan, Valérie Hayot-Sasson, Rick Stevens Causal Discovery and Optimal Experimental Design for Genome-Scale Biological Network Recovery. Search on Bibsonomy CoRR The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Jinyi Qian, Yuzhou Wang, Xiner Liu, Zijian Hu, Nan Xu, Yuetong Wang, Tianqiong Shi, Chao Ye Improving acetoin production through construction of a genome-scale metabolic model. Search on Bibsonomy Comput. Biol. Medicine The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Pritam Kundu, Amit Ghosh Genome-scale community modeling for deciphering the inter-microbial metabolic interactions in fungus-farming termite gut microbiome. Search on Bibsonomy Comput. Biol. Medicine The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Maxwell Neal, Deepan Thiruppathy, Karsten Zengler Genome-scale metabolic modeling of the human gut bacterium Bacteroides fragilis strain 638R. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Diego Tec-Campos, Camila Posadas, Juan D. Tibocha-Bonilla, Deepan Thiruppathy, Nathan Glonek, Cristal Zuñiga, Alejandro Zepeda, Karsten Zengler The genome-scale metabolic model for the purple non-sulfur bacterium Rhodopseudomonas palustris Bis A53 accurately predicts phenotypes under chemoheterotrophic, chemoautotrophic, photoheterotrophic, and photoautotrophic growth conditions. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Tareian A. Cazares, Faiz W. Rizvi, Balaji Iyer, Xiaoting Chen, Michael Kotliar, Anthony T. Bejjani, Joseph A. Wayman, Omer Donmez, Benjamin Wronowski, Sreeja Parameswaran, Leah C. Kottyan, Artem Barski, Matthew T. Weirauch, V. B. Surya Prasath, Emily R. Miraldi maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Tyler W. H. Backman, Christina Schenk, Tijana Radivojevic, David Ando, Jahnavi Singh, Jeffrey J. Czajka, Zak Costello, Jay D. Keasling, Yinjie Tang, Elena V. Akhmatskaya, Héctor García Martín BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Emanuel Cunha, Miguel Silva, Inês Chaves, Hüseyin Demirci, Davide Lagoa, Diogo Lima, Miguel Rocha 0001, Isabel Rocha, Oscar Días The first multi-tissue genome-scale metabolic model of a woody plant highlights suberin biosynthesis pathways in Quercus suber. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Alina Rekena, Marina J. Pinheiro, Nemailla Bonturi, Isma Belouah, Eliise Tammekivi, Koit Herodes, Eduard J. Kerkhoven, Petri-Jaan Lahtvee Genome-scale metabolic modeling reveals metabolic trade-offs associated with lipid production in Rhodotorula toruloides. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13William T. Scott Jr., Sara Benito-Vaquerizo, Johannes Zimmermann, Djordje Bajic, Almut Heinken, María Suárez-Diez, Peter J. Schaap A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Puhua Niu, Maria J. Soto, Shuai Huang 0001, Byung-Jun Yoon, Edward R. Dougherty, Francis J. Alexander, Ian Blaby, Xiaoning Qian Sensitivity Analysis of Genome-Scale Metabolic Flux Prediction. Search on Bibsonomy J. Comput. Biol. The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Veli Mäkinen, Djamal Belazzougui, Fabio Cunial, Alexandru I. Tomescu Genome-Scale Algorithm Design: Bioinformatics in the Era of High-Throughput Sequencing (2nd edition). Search on Bibsonomy 2023   RDF
13Ashka Shah, Arvind Ramanathan, Valérie Hayot-Sasson, Rick Stevens Causal Discovery and Optimal Experimental Design for Genome-Scale Biological Network Recovery. Search on Bibsonomy PASC The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Teresa Joven, Jorge Lázaro, Jorge Júlvez Modeling Uncertain Biomass Composition in Genome-Scale Metabolic Models with Flexible Nets. Search on Bibsonomy QEST The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Gautham Dharuman, Arvind Ramanathan Protein Generation via Genome-scale Language Models with Bio-physical Scoring. Search on Bibsonomy SC Workshops The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Kowshika Sarker, Ruoqing Zhu, Hannah D. Holscher, ChengXiang Zhai Augmenting nutritional metabolomics with a genome-scale metabolic model for assessment of diet intake. Search on Bibsonomy BCB The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
13Miria Bernardino, Robert G. Beiko Genome-scale prediction of bacterial promoters. Search on Bibsonomy Biosyst. The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Ying Ji 0002, Rui Chen 0021, Quan Wang 0004, Qiang Wei, Ran Tao, Bingshan Li A Bayesian framework to integrate multi-level genome-scale data for Autism risk gene prioritization. Search on Bibsonomy BMC Bioinform. The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Max van 't Hof, Omkar S. Mohite, Jonathan M. Monk, Tilmann Weber, Bernhard O. Palsson, Morten O. A. Sommer High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917. Search on Bibsonomy BMC Bioinform. The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Yumeng Zhang, Yangming Zhang, Yi Xiong, Hui Wang, Zixin Deng, Jiangning Song, Hong-Yu Ou T4SEfinder: a bioinformatics tool for genome-scale prediction of bacterial type IV secreted effectors using pre-trained protein language model. Search on Bibsonomy Briefings Bioinform. The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Xinxin Peng, Xiaoyu Wang, Yuming Guo, Zongyuan Ge, Fuyi Li, Xin Gao 0001, Jiangning Song RBP-TSTL is a two-stage transfer learning framework for genome-scale prediction of RNA-binding proteins. Search on Bibsonomy Briefings Bioinform. The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Gianvito Pio, Paolo Mignone, Giuseppe Magazzù, Guido Zampieri, Michelangelo Ceci, Claudio Angione Integrating genome-scale metabolic modelling and transfer learning for human gene regulatory network reconstruction. Search on Bibsonomy Bioinform. The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Rebecca L. Rubinstein, Mikayla A. Borton, Haiyan Zhou, Michael Shaffer, David W. Hoyt, James Stegen, Christopher S. Henry, Kelly C. Wrighton, Roelof Versteeg ORT: a workflow linking genome-scale metabolic models with reactive transport codes. Search on Bibsonomy Bioinform. The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Ines Thiele, German A. Preciat Gonzalez, Ronan M. T. Fleming MetaboAnnotator: an efficient toolbox to annotate metabolites in genome-scale metabolic reconstructions. Search on Bibsonomy Bioinform. The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Tadeja Rezen, Alexandre Martins, Miha Mraz, Nikolaj Zimic, Damjana Rozman, Miha Moskon Integration of omics data to generate and analyse COVID-19 specific genome-scale metabolic models. Search on Bibsonomy Comput. Biol. Medicine The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Abhijit Paul, Salman Azhar, Phonindra Nath Das, Nandadulal Bairagi, Samrat Chatterjee Elucidating the metabolic characteristics of pancreatic β-cells from patients with type 2 diabetes (T2D) using a genome-scale metabolic modeling. Search on Bibsonomy Comput. Biol. Medicine The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Tânia Barata, Vítor Vieira, Rúben Rodrigues, Ricardo Pires das Neves, Miguel Rocha 0001 Reconstruction of tissue-specific genome-scale metabolic models for human cancer stem cells. Search on Bibsonomy Comput. Biol. Medicine The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Giuseppe Magazzù, Guido Zampieri, Claudio Angione Clinical stratification improves the diagnostic accuracy of small omics datasets within machine learning and genome-scale metabolic modelling methods. Search on Bibsonomy Comput. Biol. Medicine The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Alexandre Oliveira, Emanuel Cunha, Fernando Cruz, João Capela, João Carlos Sequeira, Marta Sampaio, Cláudia Sampaio, Oscar Días Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool. Search on Bibsonomy J. Integr. Bioinform. The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Maureen A. Carey, Gregory L. Medlock, Michal Stolarczyk, William A. Petri Jr., Jennifer L. Guler, Jason A. Papin Comparative analyses of parasites with a comprehensive database of genome-scale metabolic models. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Verónica S. Martínez, Pedro A. Saa, Jason Jooste, Kanupriya Tiwari, Lake-Ee Quek, Lars Keld Nielsen The topology of genome-scale metabolic reconstructions unravels independent modules and high network flexibility. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Nicole Pearcy, Marco Garavaglia, Thomas Millat, James P. Gilbert, Yoseb Song, Hassan Hartman, Craig Woods, Claudio Tomi-Andrino, Rajesh Reddy Bommareddy, Byung-Kwan Cho, David A. Fell, Mark Poolman, John R. King, Klaus Winzer, Jamie Twycross, Nigel P. Minton A genome-scale metabolic model of Cupriavidus necator H16 integrated with TraDIS and transcriptomic data reveals metabolic insights for biotechnological applications. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Matteo N. Amaradio, Giorgio Jansen, Varun Ojha 0001, Jole Costanza, Giuseppe Di Fatta, Giuseppe Nicosia Inferring Pathological Metabolic Patterns in Breast Cancer Tissue from Genome-Scale Models. Search on Bibsonomy LOD (1) The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Kiumars Badr, Q. Peter He, Jin Wang Understanding the evolution of interspecies metabolic interactions using dynamic genome-scale metabolic modeling*. Search on Bibsonomy ACC The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Yunfeng Shan, Guo Li, Xiu-Qing Li, Robin Gras, Youjun Zhou Data-Mining with Three Genome-Scale Approaches Supports that Lungfish is the Closest Living Relative of Land Vertebrate, but not Coelacanth. Search on Bibsonomy CSCI The full citation details ... 2022 DBLP  DOI  BibTeX  RDF
13Payal Gaggar, Manish Kumar, Kunal Mukhopadhyay Genome-Scale Identification, in Silico Characterization and Interaction Study Between Wheat SNARE and NPSN Gene Families Involved in Vesicular Transport. Search on Bibsonomy IEEE ACM Trans. Comput. Biol. Bioinform. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
13Sudip Sharma, Sudhir Kumar 0001 Fast and accurate bootstrap confidence limits on genome-scale phylogenies using little bootstraps. Search on Bibsonomy Nat. Comput. Sci. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
13Qi Wang, Zhaoqian Liu, Bo Yan, Wen-Chi Chou, Laurence Ettwiller, Qin Ma 0003, Bingqiang Liu A novel computational framework for genome-scale alternative transcription units prediction. Search on Bibsonomy Briefings Bioinform. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
13Wei Du 0002, Gaoyang Li, Nicholas Ho, Landon Jenkins, Drew Hockaday, Jiankang Tan, Huansheng Cao CyanoPATH: a knowledgebase of genome-scale functional repertoire for toxic cyanobacterial blooms. Search on Bibsonomy Briefings Bioinform. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
13Sisheng Liu, Jinpeng Liu, Yanqi Xie, Tingting Zhai, Eugene W. Hinderer, Arnold J. Stromberg, Nathan L. Vanderford, Jill M. Kolesar, Hunter N. B. Moseley, Li Chen, Chunming Liu, Chi Wang 0003 MEScan: a powerful statistical framework for genome-scale mutual exclusivity analysis of cancer mutations. Search on Bibsonomy Bioinform. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
13Almut Heinken, Stefanía Magnúsdóttir, Ronan M. T. Fleming, Ines Thiele DEMETER: efficient simultaneous curation of genome-scale reconstructions guided by experimental data and refined gene annotations. Search on Bibsonomy Bioinform. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
13Mahim Mahbub, Zahin Wahab, Rezwana Reaz, Mohammad Saifur Rahman, Md. Shamsuzzoha Bayzid wQFM: highly accurate genome-scale species tree estimation from weighted quartets. Search on Bibsonomy Bioinform. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
13Sylwester Swat, Artur Laskowski, Jan Badura, Wojciech Frohmberg, Pawel Wojciechowski, Aleksandra Swiercz, Marta Kasprzak, Jacek Blazewicz Genome-scale de novo assembly using ALGA. Search on Bibsonomy Bioinform. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
13Ewelina Weglarz-Tomczak, Jakub M. Tomczak, Stanley Brul M2R: a Python add-on to cobrapy for modifying human genome-scale metabolic reconstruction using the gut microbiota models. Search on Bibsonomy Bioinform. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
13Giuseppe Cattaneo, Umberto Ferraro Petrillo, Raffaele Giancarlo, Francesco Palini, Chiara Romualdi The Power of Alignment-Free Histogram-based Functions: a Comprehensive Genome Scale Experimental Analysis - Version 1. Search on Bibsonomy CoRR The full citation details ... 2021 DBLP  BibTeX  RDF
13Leo Zhu, William Pei, Ines Thiele, Radhakrishnan Mahadevan Integration of a physiologically-based pharmacokinetic model with a whole-body, organ-resolved genome-scale model for characterization of ethanol and acetaldehyde metabolism. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
13Christian Schulz 0011, Tjasa Kumelj, Emil Karlsen, Eivind Almaas Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
13Piyush Nanda, Amit Ghosh Genome Scale-Differential Flux Analysis reveals deregulation of lung cell metabolism on SARS-CoV-2 infection. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
13Chaitra Sarathy, Marian Breuer, Martina Kutmon, Michiel E. Adriaens, Chris T. A. Evelo, Ilja C. W. Arts Comparison of metabolic states using genome-scale metabolic models. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
13Sudharshan Ravi, Rudiyanto Gunawan ΔFBA - Predicting metabolic flux alterations using genome-scale metabolic models and differential transcriptomic data. Search on Bibsonomy PLoS Comput. Biol. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
13Alexandre Oliveira, Emanuel Cunha, Fernando Cruz, João Capela, João Carlos Sequeira, Marta Sampaio, Oscar Días Towards a Multivariate Analysis of Genome-Scale Metabolic Models Derived from the BiGG Models Database. Search on Bibsonomy PACBB The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
13Miria Bernardino, Robert G. Beiko Genome-scale prediction of bacterial promoters. Search on Bibsonomy CIBCB The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
13Mu Gao, Peik Lund-Andersen, Alex Morehead, Sajid Mahmud, Chen Chen, Xiao Chen, Nabin Giri, Raj S. Roy, Farhan Quadir, T. Chad Effler, Ryan Prout, Subil Abraham, Wael R. Elwasif, Nicholas Quentin Haas, Jeffrey Skolnick, Jianlin Cheng, Ada Sedova High-Performance Deep Learning Toolbox for Genome-Scale Prediction of Protein Structure and Function. Search on Bibsonomy MLHPC@SC The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
13Mojtaba Tefagh, Stephen P. Boyd SWIFTCORE: a tool for the context-specific reconstruction of genome-scale metabolic networks. Search on Bibsonomy BMC Bioinform. The full citation details ... 2020 DBLP  DOI  BibTeX  RDF
13Hanen Mhamdi, Jérémie Bourdon, Abdelhalim Larhlimi, Mourad Elloumi Bayesian Integrative Modeling of Genome-Scale Metabolic and Regulatory Networks. Search on Bibsonomy Informatics The full citation details ... 2020 DBLP  DOI  BibTeX  RDF
13Archana Hari, Daniel Lobo Fluxer: a web application to compute, analyze and visualize genome-scale metabolic flux networks. Search on Bibsonomy Nucleic Acids Res. The full citation details ... 2020 DBLP  DOI  BibTeX  RDF
13Marco Passaro, Martina Martinovic, Valeria Bevilacqua, Elliot A. Hershberg, Grazisa Rossetti, Brian J. Beliveau, Raoul Jean Pierre Bonnal, Massimiliano Pagani OligoMinerApp: a web-server application for the design of genome-scale oligonucleotide in situ hybridization probes through the flexible OligoMiner environment. Search on Bibsonomy Nucleic Acids Res. The full citation details ... 2020 DBLP  DOI  BibTeX  RDF
13Charles J. Norsigian, Neha Pusarla, John Luke McConn, James T. Yurkovich, Andreas Dräger, Bernhard O. Palsson, Zachary A. King BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree. Search on Bibsonomy Nucleic Acids Res. The full citation details ... 2020 DBLP  DOI  BibTeX  RDF
13Vittorio Fortino, Giovanni Scala, Dario Greco Feature set optimization in biomarker discovery from genome-scale data. Search on Bibsonomy Bioinform. The full citation details ... 2020 DBLP  DOI  BibTeX  RDF
13Martin Scharm, Olaf Wolkenhauer, Mahdi Jalili, Ali Salehzadeh-Yazdi GEMtractor: extracting views into genome-scale metabolic models. Search on Bibsonomy Bioinform. The full citation details ... 2020 DBLP  DOI  BibTeX  RDF
13Francisco Guil, José F. Hidalgo, José M. García 0001 Boosting the extraction of elementary flux modes in genome-scale metabolic networks using the linear programming approach. Search on Bibsonomy Bioinform. The full citation details ... 2020 DBLP  DOI  BibTeX  RDF
13Nikolay Martyushenko, Eivind Almaas ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models. Search on Bibsonomy Bioinform. The full citation details ... 2020 DBLP  DOI  BibTeX  RDF
13Claude Pasquier, Alain Robichon Computational prediction of miRNA/mRNA duplexomes at the whole human genome scale reveals functional subnetworks of interacting genes with embedded miRNA annealing motifs. Search on Bibsonomy Comput. Biol. Chem. The full citation details ... 2020 DBLP  DOI  BibTeX  RDF
13Andrea Cabbia, Peter A. J. Hilbers, Natal A. W. van Riel A Distance-Based Framework for the Characterization of Metabolic Heterogeneity in Large Sets of Genome-Scale Metabolic Models. Search on Bibsonomy Patterns The full citation details ... 2020 DBLP  DOI  BibTeX  RDF
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