Search results for "introns"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
125	Jun Hu, Jing Zhang	The Cluster Distribution of Regulatory Motifs of Transcription in Yeast Introns.	ICIC (2)	2005	DBLP DOI BibTeX RDF
108	Huiyu Xia, Jianning Bi, Yanda Li	Support Vector Machine Approach for Retained Introns Prediction Using Sequence Features.	ISNN (2)	2006	DBLP DOI BibTeX RDF
108	Walter Gilbert	Invited presentation: introns and modules in ancient conserved genes (abstract only).	RECOMB	2000	DBLP DOI BibTeX RDF
75	Ravi Gupta, Ankush Mittal, Kuldip Singh, Prateek Bajpai, Suraj Prakash	A Time Series Approach for Identification of Exons and Introns.	ICIT	2007	DBLP DOI BibTeX RDF
66	Ting Chen	Gene-finding via tandem mass spectrometry.	RECOMB	2001	DBLP DOI BibTeX RDF
62	Jasmin Coulombe-Huntington, Jacek Majewski	Intron Loss Dynamics in Mammals.	Comparative Genomics	2006	DBLP DOI BibTeX RDF	gene structure, mammalian evolution, comparative genomics, introns
62	Xue Zhong, Terence Soule	Growth of self-canceling code in evolutionary systems.	GECCO	2006	DBLP DOI BibTeX RDF	exons, genetic robustness, robustness, bloat, code bloat, introns
59	Manuel Aguilar R., Héctor J. Fraire H., Laura Cruz Reyes, Juan Javier González Barbosa, Graciela Mora Guadalupe Castilla V., Claudia Gómez Santillán	Classic Cryptanalysis Applied to Exons and Introns Prediction.	ICCSA (3)	2007	DBLP DOI BibTeX RDF
52	Santiago García Carbajal, Fermín González Martinez	Evolutive Introns: A Non-Costly Method of Using Introns in GP.	Genet. Program. Evolvable Mach.	2001	DBLP DOI BibTeX RDF
49	Jie Zheng 0002, Igor B. Rogozin, Eugene V. Koonin, Teresa M. Przytycka	A Rigorous Analysis of the Pattern of Intron Conservation Supports the Coelomata Clade of Animals.	RECOMB-CG	2007	DBLP DOI BibTeX RDF
49	Teresa M. Przytycka	An Important Connection Between Network Motifs and Parsimony Models.	RECOMB	2006	DBLP DOI BibTeX RDF
42	Xiao Peng 0001, Prahlad Vadakkepat, Tong Heng Lee	Context-Dependent DNA Coding With Redundancy and Introns.	IEEE Trans. Syst. Man Cybern. Part B	2008	DBLP DOI BibTeX RDF
42	Trent McConaghy, Georges G. E. Gielen	Double-strength CAFFEINE: fast template-free symbolic modeling of analog circuits via implicit canonical form functions and explicit introns.	DATE	2006	DBLP DOI BibTeX RDF
42	Jeroen Eggermont, Joost N. Kok, Walter A. Kosters	Detecting and Pruning Introns for Faster Decision Tree Evolution.	PPSN	2004	DBLP DOI BibTeX RDF
33	Rajasekhar Kakumani, Vijay Kumar Devabhaktuni, M. Omair Ahmad	Prediction of protein-coding regions in DNA sequences using a model-based approach.	ISCAS	2008	DBLP DOI BibTeX RDF
33	Nidhal Bouaynaya, Dan Schonfeld	Protein Communication System: Evolution and Genomic Structure.	Algorithmica	2007	DBLP DOI BibTeX RDF
33	Andigoni Malousi, Vassilis Koutkias, Sofia Kouidou, Nicos Maglaveras	Intrinsic Splicing Profile of Human Genes Undergoing Simple Cassette Exon Events.	ISBMDA	2006	DBLP DOI BibTeX RDF	cassette exons, intrinsic features, Alternative splicing, splice sites
33	Miklós Csürös	Likely Scenarios of Intron Evolution.	Comparative Genomics	2005	DBLP DOI BibTeX RDF
33	Santiago García Carbajal, John Levine, Fermín González Martinez	Multi Niche Parallel GP with a Junk-Code Migration Model.	EuroGP	2003	DBLP DOI BibTeX RDF
33	Alain Ratle, Michèle Sebag	Avoiding the Bloat with Stochastic Grammar-Based Genetic Programming.	Artificial Evolution	2001	DBLP DOI BibTeX RDF
29	Mitsunori Miki, Masafumi Hashimoto, Yoshihisa Fujita, Tomoyuki Hiroyasu, Masaru Shibata	Program search with simulated annealing.	GECCO	2007	DBLP DOI BibTeX RDF	fixed temperatures, program search, syntactic introns, genetic programming, simulated annealing, bloat
29	Pamela A. Taylor	Exon/Intron Discrimination Using the Finite Induction Pattern Matching Technique.	SAC	1999	DBLP DOI BibTeX RDF	exons, pattern matching, DNA, introns
26	Weiping Wang, Jiming Hu, Han Li, Jun Yan, Xiaoyong Sun	PlantIntronDB: a database for plant introns that host functional elements.	Database J. Biol. Databases Curation	2023	DBLP DOI BibTeX RDF
26	Sonia García-Ruíz, Emil K. Gustavsson, David Zhang, Regina H. Reynolds, Zhongbo Chen, Aine Fairbrother-Browne, Ana Luisa Gil-Martínez, Juan A. Botía, Leonardo Collado-Torres, Mina Ryten	IntroVerse: a comprehensive database of introns across human tissues.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
26	Sangseon Lee, Taeheon Lee, Yung-Kyun Noh, Sun Kim	Ranked k-Spectrum Kernel for Comparative and Evolutionary Comparison of Exons, Introns, and CpG Islands.	IEEE ACM Trans. Comput. Biol. Bioinform.	2021	DBLP DOI BibTeX RDF
26	Aparajita Dutta, Kusum Kumari Singh, Ashish Anand	SpliceViNCI: Visualizing the splicing of non-canonical introns through recurrent neural networks.	J. Bioinform. Comput. Biol.	2021	DBLP DOI BibTeX RDF
26	Feriel Ben Nasr, Afef Elloumi Oueslati	CNN for human exons and introns classification.	SSD	2021	DBLP DOI BibTeX RDF
26	Junyi Li, Li Zhang, Huinian Li, Yuan Ping, Qingzhe Xu, Rongjie Wang, Renjie Tan, Zhen Wang, Bo Liu 0023, Yadong Wang	Integrated entropy-based approach for analyzing exons and introns in DNA sequences.	BMC Bioinform.	2019	DBLP DOI BibTeX RDF
26	Alan Joseph Bekker, Michal Chorev, Liran Carmel, Jacob Goldberger	A deep neural network witharestricted noisy channel for identification of functional introns.	MLSP	2017	DBLP DOI BibTeX RDF
26	Ze Liu, Jiuqiang Han, Hongqiang Lv, Jun Liu 0024, Ruiling Liu	Computational identification of circular RNAs based on conformational and thermodynamic properties in the flanking introns.	Comput. Biol. Chem.	2016	DBLP DOI BibTeX RDF
26	Antonia Cianciulli, Rosa Calvello, Maria A. Panaro	Determinism and randomness in the evolution of introns and sine inserts in mouse and human mitochondrial solute carrier and cytokine receptor genes.	Comput. Biol. Chem.	2015	DBLP DOI BibTeX RDF
26	Mauro Castelli, Leonardo Vanneschi, Sara Silva	Corrections to "Semantic Search Based Genetic Programming and the Effect of Introns Deletion".	IEEE Trans. Cybern.	2014	DBLP DOI BibTeX RDF
26	Imen Messaoudi, Afef Elloumi Oueslati, Zied Lachiri	Complex Morlet Wavelet Analysis of the DNA Frequency Chaos Game Signal and Revealing Specific Motifs of Introns in C.elegans.	CoRR	2013	DBLP BibTeX RDF
26	Manuel A. Candales, Adrian Duong, Keyar S. Hood, Tony Li, Ryan A. E. Neufeld, Runda Sun, Bonnie A. McNeil, Li Wu, Ashley M. Jarding, Steven Zimmerly	Database for bacterial group II introns.	Nucleic Acids Res.	2012	DBLP DOI BibTeX RDF
26	Raphael Tavares, Gabriel Renaud, Paulo Sergio Lopes Oliveira, Carlos G. Ferreira, Emmanuel Dias-Neto, Fabio Passetti	Identical sequence patterns in the ends of exons and introns of human protein-coding genes.	Comput. Biol. Chem.	2012	DBLP DOI BibTeX RDF
26	Ying Zhang, Mark T. Romanish, Dixie L. Mager	Distributions of Transposable Elements Reveal Hazardous Zones in Mammalian Introns.	PLoS Comput. Biol.	2011	DBLP DOI BibTeX RDF
26	Jun Hu, Huimin Li, Jing Zhang	Analysis of transcriptional synergy between upstream regions and introns in ribosomal protein genes of yeast.	Comput. Biol. Chem.	2010	DBLP DOI BibTeX RDF
26	Paulo R. Silla, Maria Angelica de Oliveira Camargo-Brunetto, Eliseu Binneck	Using a Support Vector Machine to identify pre-miRNAs in soybean (Glycine max) introns.	ISDA	2010	DBLP DOI BibTeX RDF
26	Matthew D. Wilkerson, Yuanbin Ru, Volker Brendel	Common introns within orthologous genes: software and application to plants.	Briefings Bioinform.	2009	DBLP DOI BibTeX RDF
26	Francisco Bellas, José Antonio Becerra, Richard J. Duro	Using promoters and functional introns in genetic algorithms for neuroevolutionary learning in non-stationary problems.	Neurocomputing	2009	DBLP DOI BibTeX RDF
26	Emmanuel Benard, Christian J. Michel	Computation of direct and inverse mutations with the SEGM web server (Stochastic Evolution of Genetic Motifs): An application to splice sites of human genome introns.	Comput. Biol. Chem.	2009	DBLP DOI BibTeX RDF
26	Thomas K. F. Wong, Tak Wah Lam, Wanling Yang, Siu-Ming Yiu	Finding Alternative Splicing Patterns with Strong Support from expressed Sequences on Individual exons/introns.	J. Bioinform. Comput. Biol.	2008	DBLP DOI BibTeX RDF
26	Tyler S. Alioto	U12DB: a database of orthologous U12-type spliceosomal introns.	Nucleic Acids Res.	2007	DBLP DOI BibTeX RDF
26	Miklós Csürös, J. Andrew Holey, Igor B. Rogozin	In search of lost introns.	ISMB/ECCB (Supplement of Bioinformatics)	2007	DBLP DOI BibTeX RDF
26	Krishna R. Kalari, Melanie Casavant, Thomas B. Bair, Henry L. Keen, Josep M. Comeron, Thomas L. Casavant, Todd E. Scheetz	First Exons and Introns - A Survey of GC Content and Gene Structure in the Human Genome.	Silico Biol.	2006	DBLP BibTeX RDF
26	Mariusz Boryczka	Eliminating Introns in Ant Colony Programming.	Fundam. Informaticae	2005	DBLP BibTeX RDF
26	Albert D. G. de Roos	Origins of introns based on the definition of exon modules and their conserved interfaces.	Bioinform.	2005	DBLP DOI BibTeX RDF
26	Michael E. Sparks, Volker Brendel	Incorporation of splice site probability models for non-canonical introns improves gene structure prediction in plants.	Bioinform.	2005	DBLP DOI BibTeX RDF
26	G. Sampath, James TenEyck	Non-occurring and rare quads in PDB and translated introns from XPro with possible applications in nanostructure design.	CSB Workshops	2005	DBLP DOI BibTeX RDF
26	Sumie Kitamura-Abe, Hitomi Itoh, Takanori Washio, Akihiro Tsutsumi, Masaru Tomita	Characterization of the Splice Sites in Gt-ag and Gc-ag Introns in Higher Eukaryotes Using Full-length Cdnas.	J. Bioinform. Comput. Biol.	2004	DBLP DOI BibTeX RDF
26	Meena K. Sakharkar, Vincent T. K. Chow, Pandjassarame Kangueane	Distributions of exons and introns in the human genome.	Silico Biol.	2004	DBLP BibTeX RDF
26	Lixin Dai, Navtej Toor, Robert Olson, Andrew Keeping, Steven Zimmerly	Database for mobile group II introns.	Nucleic Acids Res.	2003	DBLP DOI BibTeX RDF
26	Jing Zhang, Jun Hu, Xiufan Shi, Huai Cao, Weibo Liu	Detection of potential positive regulatory motifs of transcription in yeast introns by comparative analysis of oligonucleotide frequencies.	Comput. Biol. Chem.	2003	DBLP DOI BibTeX RDF
26	Fei Li, David L. Herrin	FUGOID: functional genomics of organellar introns database.	Nucleic Acids Res.	2002	DBLP DOI BibTeX RDF
26	Victor G. Levitsky, Olga A. Podkolodnaya, Nikolay A. Kolchanov, Nikolay L. Podkolodny	Nucleosome formation potential of exons, introns, and Alu repeats.	Bioinform.	2001	DBLP DOI BibTeX RDF
26	W. James Kent, Alan M. Zahler	The Intronerator: exploring introns and alternative splicing in Caenorhabditis elegans.	Nucleic Acids Res.	2000	DBLP DOI BibTeX RDF
26	Hitoshi Iba, Makoto Terao	Controlling Effective Introns for Multi-Agent Learning by Genetic Programming.	GECCO	2000	DBLP BibTeX RDF
26	Peter W. H. Smith, Kim Harries	Code Growth, Explicitly Defined Introns, and Alternative Selection Schemes.	Evol. Comput.	1998	DBLP DOI BibTeX RDF
26	Peter Nordin, Wolfgang Banzhaf, Frank D. Francone	Introns in Nature and in Simulated Structure Evolution.	BCEC	1997	DBLP BibTeX RDF
26	Simon Handley	Classifying Nucleic Acid Sub-Sequences as Introns or Exons Using Genetic Programming.	ISMB	1995	DBLP BibTeX RDF
26	Takashi Yamada, Koichiro Tamura, Tadanori Aimi, Puttaporn Songsri	Self-splicing group I introns in eukaryotic viruses.	Nucleic Acids Res.	1994	DBLP DOI BibTeX RDF
26	Jonathan D. Blake, Richard D. Blake	The Use of Multi-dimensional Scaling to Investigate Similarities Between Non-random Oligonucleotide Frequencies in Introns and Exons.	Comput. Chem.	1993	DBLP DOI BibTeX RDF
26	Elisabeth Waigmann, Andrea Barta	Processing of chimeric introns in dicot plants: evidence for a close cooperation between 5' and 3' splice sites.	Nucleic Acids Res.	1992	DBLP DOI BibTeX RDF
26	James R. Levenick	Inserting Introns Improves Genetic Algorithm Success Rate: Taking a Cue from Biology.	ICGA	1991	DBLP BibTeX RDF
26	Frank Baas, G. J. van Ommen, H. Bikker, A. C. Arnberg, J. J. de Vijlder	The human thyroglobulin gene is over 300 kb long and contains introns of up to 64 kb.	Nucleic Acids Res.	1986	DBLP DOI BibTeX RDF
26	Elizabeth B. Keller, William A. Noon	Intron splicing: a conserved internal signal in introns of Drosophila pre-mRNAs.	Nucleic Acids Res.	1985	DBLP DOI BibTeX RDF
26	D. J. Jolly, C. A. Thomas Jr.	Nuclear RNA transcripts from Drosophila melanogaster ribosomal RNA genes containing introns.	Nucleic Acids Res.	1980	DBLP DOI BibTeX RDF
16	Tomás Martínek, Jan Vozenilek, Matej Lexa	Architecture model for approximate palindrome detection.	DDECS	2009	DBLP DOI BibTeX RDF
16	William B. Langdon, Wolfgang Banzhaf	Repeated patterns in genetic programming.	Nat. Comput.	2008	DBLP DOI BibTeX RDF	Genetic alogorithms, ALU, Macky-Glass, Poly-10, Nuclear protein localisation, Tiny GP, GPquick, Evolution of program shape, Sensitivity analysis, Frequent subgraphs, SINE, Frequent subtrees
16	Anuradha Roy, Jennifer L. Leopold, Anne M. Maglia	Alternative Splicing: Associating Frequency with Isoforms.	BIBE	2007	DBLP DOI BibTeX RDF
16	Sihui Zhao, Jihye Kim, Steffen Heber	Large-scale Discovery of Regulatory Motifs Involved in Alternative Splicing.	BIBE	2007	DBLP DOI BibTeX RDF
16	Yu-Wei Chiu, Fang-Rong Hsu, Man-Kwan Shan	Comparative Analysis of Exon Skipping Patterns in Human and Mouse.	DEXA Workshops	2006	DBLP DOI BibTeX RDF
16	Trent McConaghy, Georges G. E. Gielen	Canonical form functions as a simple means for genetic programming to evolve human-interpretable functions.	GECCO	2006	DBLP DOI BibTeX RDF	genetic programming, grammar, grammatical evolution
16	Hammad Majeed	A new approach to evaluate GP schema in context.	GECCO Workshops	2005	DBLP DOI BibTeX RDF	tree semantics, schema theory, module acquisition
16	David Jackson 0001	Dormant program nodes and the efficiency of genetic programming.	GECCO	2005	DBLP DOI BibTeX RDF	dormant node, fitness-preserving crossover, genetic programming, efficiency, intron
16	Hammad Majeed, Conor Ryan, R. Muhammad Atif Azad	Evaluating GP schema in context.	GECCO	2005	DBLP DOI BibTeX RDF	tree semantics, genetic programming, schema theory, module acquisition
16	William B. Langdon, Wolfgang Banzhaf	Repeated Patterns in Tree Genetic Programming.	EuroGP	2005	DBLP DOI BibTeX RDF
16	Miguel Galves, Zanoni Dias	Comparison of Genomic DNA to cDNA Alignment Methods.	BSB	2005	DBLP DOI BibTeX RDF
16	Alan Wee-Chung Liew, Yonghui Wu, Hong Yan 0001	Selection of Statistical Features Based on Mutual Information for Classification of Human Coding and Non-coding DNA Sequences.	ICPR (3)	2004	DBLP DOI BibTeX RDF
16	Ken Taniguchi, Takao Terano	Logic-based genetic programming for multi-modal solutions.	SMC (6)	2004	DBLP DOI BibTeX RDF
16	Kevin Crosby, Paula Gabbert	BioSPRINT: Classification of Intron and Exon Sequences Using the SPRINT Algorithm.	CSB	2004	DBLP DOI BibTeX RDF
16	Ana Carolina Lorena, André Carlos Ponce de Leon Ferreira de Carvalho	Human Splice Site Identification with Multiclass Support Vector Machines and Bagging.	ICANN	2003	DBLP DOI BibTeX RDF
16	Jun Ogasawara, Shinichi Morishita	Practical Software for Aligning ESTs to Human Genome.	CPM	2002	DBLP DOI BibTeX RDF
16	Süleyman Cenk Sahinalp, Evan E. Eichler, Paul W. Goldberg, Petra Berenbrink, Tom Friedetzky, Funda Ergün	Statistical Identification of Uniformly Mutated Segments within Repeats.	CPM	2002	DBLP DOI BibTeX RDF
16	Jun Ogasawara, Shinichi Morishita	Fast and Sensitive Algorithm for Aligning ESTs to Human Genome.	CSB	2002	DBLP DOI BibTeX RDF
16	Alain Ratle, Michèle Sebag	A Novel Approach to Machine Discovery: Genetic Programming and Stochastic Grammars.	ILP	2002	DBLP DOI BibTeX RDF
16	Terence Soule	Exons and Code Growth in Genetic Programming.	EuroGP	2002	DBLP DOI BibTeX RDF
16	Sören Sonnenburg, Gunnar Rätsch, Arun K. Jagota, Klaus-Robert Müller	New Methods for Splice Site Recognition.	ICANN	2002	DBLP DOI BibTeX RDF
16	Phillip A. Sharp	RNA biology and the genome (abstract only).	RECOMB	2001	DBLP DOI BibTeX RDF
16	Kohsuke Yanai, Hitoshi Iba	Multi-agent Robot Learning by Means of Genetic Programming: Solving an Escape Problem.	ICES	2001	DBLP DOI BibTeX RDF
16	William B. Langdon, Wolfgang Banzhaf	Genetic Programming Bloat without Semantics.	PPSN	2000	DBLP DOI BibTeX RDF
16	Serafim Batzoglou, Lior Pachter, Jill P. Mesirov, Bonnie Berger, Eric S. Lander	Human and mouse gene structure: comparative analysis and application to exon prediction.	RECOMB	2000	DBLP DOI BibTeX RDF	gene recognition, global alignments, comparative genomics
16	Yusuke Nakamura	Human genome analysis and medicine in the 21st century (abstract only).	RECOMB	2000	DBLP DOI BibTeX RDF
16	Thomas Schiex, Annick Moisan, Pierre Rouzé	EUGÈNE: An Eukaryotic Gene Finder That Combines Several Sources of Evidence.	JOBIM	2000	DBLP DOI BibTeX RDF
16	William B. Langdon, Riccardo Poli	Fitness Causes Bloat: Mutation.	EuroGP	1998	DBLP DOI BibTeX RDF
16	Tobias Blickle	Evolving Compact Solutions in Genetic Programming: A Case Study.	PPSN	1996	DBLP DOI BibTeX RDF
16	Mark Wineberg, Franz Oppacher	A Representation Scheme To Perform Program Induction in a Canonical Genetic Algorithm.	PPSN	1994	DBLP DOI BibTeX RDF