Search results for "mRNA"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
116	Liang Chen, Hongyu Zhao	Integrating mRNA Decay Information into Co-Regulation Study.	J. Comput. Sci. Technol.	2005	DBLP DOI BibTeX RDF	mRNA decay rate, transcription rate, transcript amount, DNA binding motif, microarray
113	Catherine J. Hack, Jesús A. López	An Exploration of Some Factors Affecting the Correlation of mRNA and Proteomic Data.	KELSI	2004	DBLP DOI BibTeX RDF
86	Isaac Barjis, Ajmal Zemmar, Faisal Mohammad, Fakhreldin A. Sabel, Walied Samarrai	Modeling and simulation of IRES - engagement during the process of mRNA translation in cells infected with hepatitis C virus.	SCSC	2007	DBLP BibTeX RDF	simulation, modeling, Petri net, transcription, IRES
86	Jaime I. Dávila, Sudha Balla, Sanguthevar Rajasekaran	Fast Algorithms for Selecting Specific siRNA in Complete mRNA Data.	WABI	2007	DBLP DOI BibTeX RDF
83	Fei Wang, Peng Zheng	Searching Similar Protein under Complementary and No Stop Codon Constraints.	FSKD (4)	2008	DBLP DOI BibTeX RDF
69	Barry Cohen, Steven Skiena	Designing RNA structures: natural and artificial selection.	RECOMB	2002	DBLP DOI BibTeX RDF
58	Haifeng Li 0012, Tao Jiang 0001	A class of edit kernels for SVMs to predict translation initiation sites in eukaryotic mRNAs.	RECOMB	2004	DBLP DOI BibTeX RDF	mRNA, positive definite kernel, machine learning, support vector machine, edit distance, translation initiation site
58	Anitha Kannan, Andrew Emili, Brendan J. Frey	A Bayesian Model That Links Microarray mRNA Measurements to Mass Spectrometry Protein Measurements.	RECOMB	2007	DBLP DOI BibTeX RDF
58	Rolf Backofen, N. S. Narayanaswamy, Firas Swidan	On the Complexity of Protein Similarity Search under mRNA Structure Constraints.	STACS	2002	DBLP DOI BibTeX RDF
55	Ken-ichi Makino, Hideyasu Hirano	Design of RT-PCR Primers Based on Informational Method.	ICICIC (3)	2006	DBLP DOI BibTeX RDF
55	Boris Hollas, Rainer Schuler	A Stochastic Approach to Count RNA Molecules Using DNA Sequencing Methods.	WABI	2003	DBLP DOI BibTeX RDF
47	Hyunsoo Kim, Yingtao Bi, Ramana V. Davuluri	Estimating the Expression of Transcript Isoforms from mRNA-Seq via Nonnegative Least Squares.	BIBE	2010	DBLP DOI BibTeX RDF	transcript isoform, mRNA-Seq, transcript isoform expression estimation, nonnegative least squares
44	William B. Langdon, Joanna Rowsell, Andrew P. Harrison	Creating regular expressions as mRNA motifs with GP to predict human exon splitting.	GECCO	2009	DBLP DOI BibTeX RDF	HDONA, affymetrix genechip, alternative splicing of homosapiens exons, biological interpretation of computer generated motifs, gene expression and regulation, integration of genetic programming into bioinformatics, genetic algorithms, genetic programming, bioinformatics, regular expression, grammar, microarray analysis, alternative splicing, strongly typed genetic programming
44	Guillaume Blin, Guillaume Fertin, Danny Hermelin, Stéphane Vialette	Fixed-Parameter Algorithms for Protein Similarity Search Under mRNA Structure Constraints.	WG	2005	DBLP DOI BibTeX RDF
44	Dirk Bongartz	Some Notes on the Complexity of Protein Similarity Search under mRNA Structure Constraints.	SOFSEM	2004	DBLP DOI BibTeX RDF
41	Sven Mielordt, Ivo Grosse, Jürgen Kleffe	Data Structures for Genome Annotation, Alternative Splicing, and Validation.	DILS	2006	DBLP DOI BibTeX RDF	Gene and genome annotation, splice template, validation and confirmation, Fasta-XML format, data integration, quality control, alternative splicing
41	Rajat K. De, Kasturi Biswas	Connectionist Modelling of Dynamics of Gene Expression and Reverse Engineering Gene Regulatory Networks.	IJCNN	2006	DBLP DOI BibTeX RDF
41	Chaya Ben-Zaken Zilberstein, Eleazar Eskin, Zohar Yakhini	Using Expression Data to Discover RNA and DNA Regulatory Sequence Motifs.	Regulatory Genomics	2004	DBLP DOI BibTeX RDF
41	Rolf Backofen	RNA-Sequence-Structure Properties and Selenocysteine Insertion.	IDA	2001	DBLP DOI BibTeX RDF
33	Mingmin Xu, Yuanyuan Chen, Zhihui Xu, Liangyun Zhang, Hangjin Jiang, Cong Pian	MiRLoc: predicting miRNA subcellular localization by incorporating miRNA-mRNA interactions and mRNA subcellular localization.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
33	Gongwang Yu, Hanbing Zhu, Xiaoshu Chen, Jian-Rong Yang	Specificity of mRNA Folding and Its Association with Evolutionarily Adaptive mRNA Secondary Structures.	Genom. Proteom. Bioinform.	2021	DBLP DOI BibTeX RDF
33	Oxana A. Volkova, Yury V. Kondrakhin, Ivan S. Yevshin, Tagir F. Valeev, Ruslan N. Sharipov	Assessment of translational importance of mammalian mRNA sequence features based on Ribo-Seq and mRNA-Seq data.	J. Bioinform. Comput. Biol.	2016	DBLP DOI BibTeX RDF
33	Patrick B. F. O'Connor, Gene-Wei Li, Jonathan S. Weissman, John F. Atkins, Pavel V. Baranov	rRNA: mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments.	Bioinform.	2013	DBLP DOI BibTeX RDF
33	Thomas Dandekar, Katrin Beyer, Peer Bork, Mary-Rose Kenealy, Kostas Pantopoulos, Matthias W. Hentze, Vera Sonntag-Buck, Gilles Flouriot, Frank Gannon, Sonja Schreiber	Systematic genomic screening and analysis of mRNA in untranslated regions and mRNA precursors: combining experimental and computational approaches.	Bioinform.	1998	DBLP DOI BibTeX RDF
30	Jie Zhou 0023, Hanchuan Peng	Toward Automatic Annotation of in situ mRNA Expression Patterns of Drosophila Embryos.	CSB Workshops	2005	DBLP DOI BibTeX RDF
30	Hanchuan Peng, Eugene W. Myers	Comparing in situ mRNA expression patterns of drosophila embryos.	RECOMB	2004	DBLP DOI BibTeX RDF	drosophila, embryogenesis, in situ hybridization, image matching, gaussian mixture model, gene expression
28	Jesús M. Miró Bueno, Alfonso Rodríguez-Patón	A New Model of Synthetic Genetic Oscillator Based on Trans-Acting Repressor Ribozyme.	IWANN (2)	2009	DBLP DOI BibTeX RDF	Genetic Oscillator, Ribozyme, Simulation, Synthetic Biology
28	Eric C. Rouchka, Xiangping Wang, James H. Graham, Nigel G. F. Cooper	Computational Prediction of Genes Translationally Regulated by Cytoplasmic Polyadenylation Elements.	BICoB	2009	DBLP DOI BibTeX RDF	CPE, CPEB, untranslated region, hidden Markov model, bioinformatics, context free grammar
28	Yanxin Shi, Itamar Simon, Tom M. Mitchell, Ziv Bar-Joseph	A Combined Expression-Interaction Model for Inferring the Temporal Activity of Transcription Factors.	RECOMB	2008	DBLP DOI BibTeX RDF
28	George Tzanis, Ioannis Kavakiotis, Ioannis P. Vlahavas	Polyadenylation site prediction using interesting emerging patterns.	BIBE	2008	DBLP DOI BibTeX RDF
28	Gabriele Lillacci, Paolo Valigi	State estimation for a model of gene expression.	ISCAS	2008	DBLP DOI BibTeX RDF
28	Maria Fernanda B. Wanderley, João C. P. da Silva, Carlos Cristiano H. Borges, Ana Tereza Ribeiro de Vasconcelos	Application of Genetic Algorithms to the Genetic Regulation Problem.	BSB	2008	DBLP DOI BibTeX RDF	Gene Regulation Network, Genetic Algorithm
28	Anuradha Roy, Jennifer L. Leopold, Anne M. Maglia	Alternative Splicing: Associating Frequency with Isoforms.	BIBE	2007	DBLP DOI BibTeX RDF
28	Ambrose Jong, Chun-Hua Wu, Wensheng Zhou, Han-Min Chen, Sheng-He Huang	Genomic Survey of Cryptococcus neoformans-Induced Gene Expression Profiling in Human Brain Micro-Vascular Endothelial Cells.	FBIT	2007	DBLP DOI BibTeX RDF
28	Ramesh Katam, Hemanth K. N. Vasanthaiah, Sheikh M. Basha	Proteomic Approach to Screen Peanut Genotypes with Enhanced Nutritional Qualities.	FBIT	2007	DBLP DOI BibTeX RDF
28	Yu Zhang, Zhidong Deng, Hongshan Jiang, Peifa Jia	Inferring Gene Regulatory Networks from Multiple Data Sources Via a Dynamic Bayesian Network with Structural EM.	DILS	2007	DBLP DOI BibTeX RDF	structural Expectation Maximization, transcription factor binding location data, dynamic Bayesian network, gene regulatory networks, microarray data
28	Huimin Geng, Javeed Iqbal, Xutao Deng, Wing C. Chan, Hesham H. Ali	Virtual CGH: Prediction of Novel Regions of Chromosomal Alterations in Tumor from Gene Expression Profiling.	HICSS	2007	DBLP DOI BibTeX RDF
28	Stefan Artmann	Some Problems in Organic Coding Theory.	GTIT-C	2006	DBLP DOI BibTeX RDF
28	Ydo Wexler, Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson	A Study of Accessible Motifs and RNA Folding Complexity.	RECOMB	2006	DBLP DOI BibTeX RDF
28	Jim C. Huang, Quaid Morris, Brendan J. Frey	Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data.	RECOMB	2006	DBLP DOI BibTeX RDF
28	Alvin L.-S. Chua, Anna V. Ivshina, Vladimir A. Kuznetsov	Pareto-Gamma Statistic Reveals Global Rescaling in Transcriptomes of Low and High Aggressive Breast Cancer Phenotypes.	PRIB	2006	DBLP DOI BibTeX RDF
28	Zhenglin Hou, Cunxi Wang, Odd-Arne Olsen	TPR Packing Analysis and 3D Modeling for the HAT Domain of Human Crooked Neck Protein.	CSB Workshops	2005	DBLP DOI BibTeX RDF
28	Hideo Bannai, Heikki Hyyrö, Ayumi Shinohara, Masayuki Takeda, Kenta Nakai, Satoru Miyano	An O(N2) Algorithm for Discovering Optimal Boolean Pattern Pairs.	IEEE ACM Trans. Comput. Biol. Bioinform.	2004	DBLP DOI BibTeX RDF	Boolean patterns, suffix tree, Pattern discovery, suffix array
28	Hsun-Chang Chang, Po-Shun Yu, Tze-Wei Huang, Yaw-Ling Lin, Fang-Rong Hsu	The Application of Alternative Splicing Graphs in Quantitative Analysis of Alternative Splicing Form from EST Database.	BIBE	2004	DBLP DOI BibTeX RDF	Splicing Graph, Expressed Sequence Tag (EST), Weighted Alternative Splicing Graph, Alternative Splicing Form, Algorithm, Linear Programming, Alternative Splicing
28	WeiPing Chen, Wei Zha, Terry Cox, Xiujun Zhao, Paul Russell	3Si: A Computer Program for the Optimal Design of Short Interfering RNA (siRNA) for Gene Silencing.	CBMS	2004	DBLP DOI BibTeX RDF
28	Yunlong Liu, Hui Bin Sun, Hiroki Yokota	Regulating Gene Expression Using Optimal Control Theory.	BIBE	2003	DBLP DOI BibTeX RDF
28	Roberto Hirata Jr., Junior Barrera, Ronaldo Fumio Hashimoto, Daniel Oliveira Dantas	Microarray Gridding by Mathematical Morphology.	SIBGRAPI	2001	DBLP DOI BibTeX RDF
17	Rose-Marie Fraboulet, Yanis Si Ahmed, Marc Aubry, Sebastien Corre, Marie-Dominique Galibert, Yuna Blum	Cirscan: a shiny application to identify differentially active sponge mechanisms and visualize circRNA-miRNA-mRNA networks.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
17	Tzu-Hsien Yang, Jhih-Cheng Chen, Yuan-Han Lee, Shang-Yi Lu, Sheng-Hang Wu, Fang-Yuan Chang, Yan-Cheng Huang, Mei-Hsien Lee, Yan-Yuan Tseng, Wei-Sheng Wu	Identifying Human miRNA Target Sites via Learning the Interaction Patterns between miRNA and mRNA Segments.	J. Chem. Inf. Model.	2024	DBLP DOI BibTeX RDF
17	Tinghe Zhang, Sumin Jo, Michelle Zhang, Kai Wang, Shou-Jiang Gao, Yufei Huang	Understanding YTHDF2-mediated mRNA degradation by m6A-BERT-Deg.	Briefings Bioinform.	2024	DBLP DOI BibTeX RDF
17	Govindasamy Narayanan, M. Syed Ali 0001, Rajagopal Karthikeyan, Grienggrai Rajchakit, Ganesh Kumar Thakur, Sudesh Kumar Garg	Global Mittag-Leffler boundedness of nabla discrete-time fractional-order fuzzy complex-valued molecular models of mRNA and protein in regulatory mechanisms.	Commun. Nonlinear Sci. Numer. Simul.	2024	DBLP DOI BibTeX RDF
17	Zidong Liu, Xiaoxu Chen, Pengfei Zhang, Fuyuan Li, Lingkai Zhang, Xueliang Li 0013, Tao Huang, Yi Zheng, Taiyong Yu, Tao Zhang, Wenxian Zeng, Hongzhao Lu, Yinghua Lv	Transcriptome-wide Dynamics of m6A mRNA Methylation During Porcine Spermatogenesis.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
17	Dan Song, Ke An, Wenlong Zhai, Luyao Feng, Yingjie Xu, Ran Sun, Yueqin Wang, Yun-Gui Yang, Quancheng Kan, Xin Tian	NSUN2-mediated mRNA m5C Modification Regulates the Progression of Hepatocellular Carcinoma.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
17	Govindasamy Narayanan, M. Syed Ali 0001, Hamed H. Alsulami, Tareq Saeed, Bashir Ahmad 0003	Synchronization of T-S Fuzzy Fractional-Order Discrete-Time Complex-Valued Molecular Models of mRNA and Protein in Regulatory Mechanisms with Leakage Effects.	Neural Process. Lett.	2023	DBLP DOI BibTeX RDF
17	Farnaz Sabahi	A Design of mRNA-Based COVID-19 Vaccine Through Fuzzy Neural Network.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
17	Aditi Jain, Arvind Kumar Gupta	Modeling mRNA Translation With Ribosome Abortions.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
17	Saleh Musleh, Mohammad Tariqul Islam 0002, Rizwan Qureshi, Nihad Alajez, Tanvir Alam	Correction: MSLP: mRNA subcellular localization predictor based on machine learning techniques.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
17	Saleh Musleh, Mohammad Tariqul Islam 0002, Rizwan Qureshi, Nihad Alajez, Tanvir Alam	MSLP: mRNA subcellular localization predictor based on machine learning techniques.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
17	Li Guo, Yangyang Xiang, Yuyang Dou, Zibo Yin, Xinru Xu, Lihua Tang, Jiafeng Yu, Jun Wang 0031, Tingming Liang	GBCdb: RNA expression landscapes and ncRNA-mRNA interactions in gallbladder carcinoma.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
17	Elena Pianfetti, Marta Lovino, Elisa Ficarra, Loredana Martignetti	MiREx: mRNA levels prediction from gene sequence and miRNA target knowledge.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
17	Xiaowen Hu, Yihan Dong, Jiaxuan Zhang, Lei Deng	HGCLMDA: Predicting mRNA-Drug Sensitivity Associations via Hypergraph Contrastive Learning.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
17	Sefora Naomi Agrò, Riccardo Rozza, Santiago Movilla, Jana Aupic, Alessandra Magistrato	Molecular Dynamics Simulations Elucidate the Molecular Basis of Pre-mRNA Translocation by the Prp2 Spliceosomal Helicase.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
17	Riccardo Rozza, Pavel Janos, Alessandra Magistrato	Assessing the Binding Mode of a Splicing Modulator Stimulating Pre-mRNA Binding to the Plastic U2AF2 Splicing Factor.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
17	Haoran Gong, Jianguo Wen, Ruihan Luo, Yuzhou Feng, Jingjing Guo, Hongguang Fu, Xiaobo Zhou	Integrated mRNA sequence optimization using deep learning.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
17	Shujun He, Baizhen Gao, Rushant Sabnis, Qing Sun	RNAdegformer: accurate prediction of mRNA degradation at nucleotide resolution with deep learning.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
17	Dorian Kariuki, Kesava Asam, Bradley E. Aouizerat, Kimberly A Lewis, Jose C. Florez, Elena Flowers	Review of databases for experimentally validated human microRNA-mRNA interactions.	Database J. Biol. Databases Curation	2023	DBLP DOI BibTeX RDF
17	Shani Cohen, Eden Maximof, Shay Rokach, Mor Tadeski, Isana Veksler-Lublinsky	sInterBase: a comprehensive database of Escherichia coli sRNA-mRNA interactions.	Bioinform.	2023	DBLP DOI BibTeX RDF
17	Braden Roper, James C. Mathews, Saad Nadeem, Ji Hwan Park	Vis-SPLIT: Interactive Hierarchical Modeling for mRNA Expression Classification.	CoRR	2023	DBLP DOI BibTeX RDF
17		A 5' UTR Language Model for Decoding Untranslated Regions of mRNA and Function Predictions.	CoRR	2023	DBLP DOI BibTeX RDF
17	Zhiyuan Zheng, Hantao Yang, Yang Shi, Feng Zhou, Lingxiao Liu, Zhiping Yan, Xiaolin Wang	Identification of tumor antigens and anoikis-based molecular subtypes in the hepatocellular carcinoma immune microenvironment: implications for mRNA vaccine development and precision treatment.	J. Big Data	2023	DBLP DOI BibTeX RDF
17	Lang Li, Lvyuan He, Ying Zhu	Dissecting tumor antigens and immune subtypes for mRNA vaccine development in breast cancer.	J. Big Data	2023	DBLP DOI BibTeX RDF
17	Govindasamy Narayanan, M. Syed Ali 0001, Rajagopal Karthikeyan, Grienggrai Rajchakit, Anuwat Jirawattanapanit	Impulsive control strategies of mRNA and protein dynamics on fractional-order genetic regulatory networks with actuator saturation and its oscillations in repressilator model.	Biomed. Signal Process. Control.	2023	DBLP DOI BibTeX RDF
17	Mohammed Othman Aljahdali, Mohammad Habibur Rahman Molla	Multi-omics prognostic signatures of IPO11 mRNA expression and clinical outcomes in colorectal cancer using bioinformatics approaches.	Health Inf. Sci. Syst.	2023	DBLP DOI BibTeX RDF
17	Chaoying Zhan, Kai Liu, Yuxin Zhang, Yingbo Zhang, Mengqiao He, Rongrong Wu, Cheng Bi, Bairong Shen	Myocardial infarction unveiled: Key miRNA players screened by a novel lncRNA-miRNA-mRNA network model.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
17	Xu Xin, Yu Jia-Yin, Huang Jun-Yang, Wang Rui, Kuang Xiong-Ri, Dang Long-Rui, Jie Liu, Zhou Jue-Yu	Comprehensive analysis of lncRNA-mRNA co-expression networks in HPV-driven cervical cancer reveals the pivotal function of LINC00511-PGK1 in tumorigenesis.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
17	Ambritha Balasundaram, C. George Priya Doss	In silico analysis revealed the potential circRNA-miRNA-mRNA regulative network of non-small cell lung cancer (NSCLC).	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
17	Tianqi Liu, Yining Liu, Xiangqian Su, Lin Peng, Jiangbo Chen, Pu Xing, Xiaowen Qiao, Zaozao Wang, Jiabo Di, Min Zhao 0006, Beihai Jiang, Hong Qu	Genome-wide transcriptomics and copy number profiling identify patient-specific CNV-lncRNA-mRNA regulatory triplets in colorectal cancer.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
17	Priyash Dhakal, Hilal Tayara, Kil To Chong 0001	An ensemble of stacking classifiers for improved prediction of miRNA-mRNA interactions.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
17	Sahar Akrami, Ahmad Tahmasebi, Ali Moghadam, Amin Ramezani, Ali Niazi	Integration of mRNA and protein expression data for the identification of potential biomarkers associated with pancreatic ductal adenocarcinoma.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
17	Yifan Jin, Addeela Fayyaz, Ayesha Liaqat, Abbas Khan, Abdulrahman Alshammari, Yanjing Wang 0003, Ruo-Xu Gu, Dong-Qing Wei	Proteomics-based vaccine targets annotation and design of subunit and mRNA-based vaccines for Monkeypox virus (MPXV) against the recent outbreak.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
17	Eric C. Dykeman	Modelling ribosome kinetics and translational control on dynamic mRNA.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
17	He Zhang, Liang Zhang, Ang Lin, Congcong Xu, Ziyu Li, Kaibo Liu, Boxiang Liu, Xiaopin Ma, Fanfan Zhao, Huiling Jiang, Chunxiu Chen, Haifa Shen, Hangwen Li, David H. Mathews, Yujian Zhang, Liang Huang 0001	Algorithm for optimized mRNA design improves stability and immunogenicity.	Nat.	2023	DBLP DOI BibTeX RDF
17	Viktorija Vodilovska, Sonja Gievska, Ilinka Ivanoska	Hyperparameter Optimization of Graph Neural Networks for mRNA Degradation Prediction.	MIPRO	2023	DBLP DOI BibTeX RDF
17	Braden Roper, James C. Mathews, Saad Nadeem, Ji Hwan Park	Vis-SPLIT: Interactive Hierarchical Modeling for mRNA Expression Classification.	IEEE VIS (Short Papers)	2023	DBLP DOI BibTeX RDF
17	Yajun Liu, Ru Li, Aimin Li, Rong Fei, Guo Xie, Fang-Xiang Wu	Prediction of piRNA-mRNA interactions based on an interactive inference network.	BIBM	2023	DBLP DOI BibTeX RDF
17	Yichen Guo, Marie Denis, Rency S. Varghese, Sidharth S. Jain, Mahlet G. Tadesse, Habtom W. Ressom	Bayesian Approach Integrating Prior Knowledge for Identifying miRNA-mRNA Interactions in Hepatocellular Carcinoma.	BIBM	2023	DBLP DOI BibTeX RDF
17	Dimitrios Kokkinakis, Bastiaan Bruinsma, Mia-Marie Hammarlin	The Prevalence of mRNA Related Discussions During the Post-COVID-19 Era.	MIE	2023	DBLP DOI BibTeX RDF
17	Kadhim Hayawi, Sakib Shahriar, Hany Alashwal	Leveraging Nucleotide Dependencies for Improved mRNA Vaccine Degradation Prediction.	AICCSA	2023	DBLP DOI BibTeX RDF
17	Heherson S. Cabrera, Mike Anthony Ganzon Ganzon, John Patrick Garcia, Joaquin Marcelo, Aaron Juztine Martinez	mRNA-based In Silico Vaccine Design using Epstein-Barr Virus'Envelope Glycoprotein GP350 and Glycoprotein BDLF3 through Immunoinformatics Approaches.	ICBRA	2023	DBLP DOI BibTeX RDF
17	Tai-Wei Chiang, Te-Lun Mai, Trees-Juen Chuang	CircMiMi: a stand-alone software for constructing circular RNA-microRNA-mRNA interactions across species.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
17	Jiacheng Wu, Ni Li, Linwen Zhu, Dawei Zhen, Mengqi Li, Hang Chen, Mengmeng Ye, Yiqin Wei, Guofeng Shao	Multiple roles of apolipoprotein B mRNA editing enzyme catalytic subunit 3B (APOBEC3B) in human tumors: a pan-cancer analysis.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
17	Matej Murgas, Paul Michenthaler, Murray Bruce Reed, Gregor Gryglewski, Rupert Lanzenberger	Correlation of receptor density and mRNA expression patterns in the human cerebral cortex.	NeuroImage	2022	DBLP DOI BibTeX RDF
17	Kyoung Tak Cho, Taner Z. Sen, Carson M. Andorf	Predicting Tissue-Specific mRNA and Protein Abundance in Maize: A Machine Learning Approach.	Frontiers Artif. Intell.	2022	DBLP DOI BibTeX RDF
17	Riccardo Rozza, Andrea Saltalamacchia, Clarissa Orrico, Pavel Janos, Alessandra Magistrato	All-Atom Simulations Elucidate the Impact of U2AF2 Cancer-Associated Mutations on Pre-mRNA Recognition.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
17	Sayyed Jalil Mahdizadeh, Emil Pålsson, Antonio Carlesso, Eric Chevet, Leif A. Eriksson	QM/MM Well-Tempered Metadynamics Study of the Mechanism of XBP1 mRNA Cleavage by Inositol Requiring Enzyme 1α RNase.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
17	Xiaoqiao Chen, Sisi Chen, Matt Thomson	Minimal gene set discovery in single-cell mRNA-seq datasets with ActiveSVM.	Nat. Comput. Sci.	2022	DBLP DOI BibTeX RDF
17	Chen Shen, Huiyu Li, Miao Li, Yu Niu, Jing Liu, Li Zhu, Hongsheng Gui, Wei Han, Huiying Wang, Wenpei Zhang, Xiaochen Wang, Xiao Luo, Yu Sun, Jiangwei Yan, Fanglin Guan	DLRAPom: a hybrid pipeline of Optimized XGBoost-guided integrative multiomics analysis for identifying targetable disease-related lncRNA-miRNA-mRNA regulatory axes.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
17	Yue Bi, Fuyi Li, Xudong Guo, Zhikang Wang, Tong Pan, Yuming Guo, Geoffrey I. Webb, Jianhua Yao 0001, Cangzhi Jia, Jiangning Song	Clarion is a multi-label problem transformation method for identifying mRNA subcellular localizations.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
17	Rui Cheng 0003, Zhaochun Xu, Meng Luo 0001, Pingping Wang, Huimin Cao, Xiyun Jin, Wenyang Zhou, Lixing Xiao, Qinghua Jiang	Identification of alternative splicing-derived cancer neoantigens for mRNA vaccine development.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
17	Hongyan Lai, Yuchen Li, Hena Zhang, Jia Hu, Jiatao Liao, Ying Su, Qin Li, Bing Chen, Caiping Li, Zhen Wang, Yan Li, Jialei Wang, Zhiqiang Meng, Zhaohui Huang, Shenglin Huang	exoRBase 2.0: an atlas of mRNA, lncRNA and circRNA in extracellular vesicles from human biofluids.	Nucleic Acids Res.	2022	DBLP DOI BibTeX RDF