Search results for "motif"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
146	Minoru Asogawa, Yukiko Fujiwara, Akihiko Konagaya	A combination of a functional motif model and a structural motif model for a database validation.	HICSS (5)	1995	DBLP DOI BibTeX RDF	functional motif model, structural motif model, database validation, leucine zipper motif, twisted alpha helix sequences, DNA binding site, alpha helix region, Swiss Protein database, helical structures, PDB database, neural network, hidden Markov models, HMM, hidden Markov model, database management systems, neural nets, DNA, genetics, biology computing, subsequence
131	Chengpeng Bi	A Monte Carlo EM Algorithm for De Novo Motif Discovery in Biomolecular Sequences.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	Monte Carlo EM, multiple sequence alignment, motif discovery, transcriptional regulation, Expectation maximization (EM)
118	Yingren Liu, Karuturi R. Krishna Murthy, Wing-Kin Sung	ConstrainedMotif: A Periodicity Constraint Based Algorithm to Predict Cell-Cycle Associated Promoter Motifs Using Time-Course Gene Expression Data.	BIBE	2005	DBLP DOI BibTeX RDF	Motif prediction, Microarray, Constrained optimization, Cell-cycle
117	Jing Zhang 0012, Xi Chen 0001, Ming Li 0001	Computing Exact p-Value for Structured Motif.	CPM	2007	DBLP DOI BibTeX RDF	Pattern and motif discovery, exact p-value, dynamic programming, structured motif
115	Eric P. Xing, Wei Wu 0023, Michael I. Jordan, Richard M. Karp	LOGOS: a modular Bayesian model for de novo motif detection.	CSB	2003	DBLP DOI BibTeX RDF
111	Sven Rahmann, Tobias Marschall, Frank Behler, Oliver Kramer 0001	Modeling evolutionary fitness for DNA motif discovery.	GECCO	2009	DBLP DOI BibTeX RDF	ea, evolutionary algorithms, local search, evolution strategies, computational biology, dna, motif discovery, transcription factor, es
108	Chengpeng Bi	Multiple Sequence Local Alignment Using Monte Carlo EM Algorithm.	ISBRA	2007	DBLP DOI BibTeX RDF	Monte Carlo EM, Multiple Sequence Local Alignment, Motif Discovery, Transcriptional Regulation, Expectation Maximization (EM)
105	Sing-Hoi Sze, Songjian Lu, Jianer Chen	Integrating Sample-Driven and Pattern-Driven Approaches in Motif Finding.	WABI	2004	DBLP DOI BibTeX RDF
101	Lifang Liu 0001, Licheng Jiao, Hongwei Huo	A Greedy Two-stage Gibbs Sampling Method for Motif Discovery in Biological Sequences.	BMEI (1)	2008	DBLP DOI BibTeX RDF	Gibbs sampling, Motif discovery, Transcription factors, Binding sites
95	Bin Fu, Ming-Yang Kao, Lusheng Wang 0001	Discovering Almost Any Hidden Motif from Multiple Sequences in Polynomial Time with Low Sample Complexity and High Success Probability.	TAMC	2009	DBLP DOI BibTeX RDF
95	Giovanna Martínez-Arellano, Carlos A. Brizuela	Comparison of Simple Encoding Schemes in GA's for the Motif Finding Problem: Preliminary Results.	BSB	2007	DBLP DOI BibTeX RDF
90	Leung-Yau Lo, Tak-Ming Chan, Kin-Hong Lee, Kwong-Sak Leung	Challenges rising from learning motif evaluation functions using genetic programming.	GECCO	2010	DBLP DOI BibTeX RDF	transcription factor binding site (tfbs), modelling, genetic programming (gp), bioinformatics, motif discovery
90	Zhiping Wang, Mehmet M. Dalkilic, Sun Kim	Guiding motif discovery by iterative pattern refinement.	SAC	2004	DBLP DOI BibTeX RDF	framework, bioinformatics, pattern, Motif
88	Francis Y. L. Chin, Henry C. M. Leung, Siu-Ming Yiu, Tak Wah Lam, Roni Rosenfeld, Wai Wan Tsang, David K. Smith 0001, Y. Jiang	Finding motifs for insufficient number of sequences with strong binding to transcription facto.	RECOMB	2004	DBLP DOI BibTeX RDF	binding energy, DNA microarray, transcription factor, motif finding
86	Vincent Lacroix, Cristina G. Fernandes, Marie-France Sagot	Motif Search in Graphs: Application to Metabolic Networks.	IEEE ACM Trans. Comput. Biol. Bioinform.	2006	DBLP DOI BibTeX RDF	Reaction motif, leucine biosynthesis, evolution, graph algorithms, combinatorics, subgraph isomorphism, metabolic network, network motif
84	Henry C. M. Leung, Francis Y. L. Chin	An Efficient Algorithm for the Extended (l, d)-Motif Problem with Unknown Number of Binding Sites.	BIBE	2005	DBLP DOI BibTeX RDF
84	Henry C. M. Leung, Francis Y. L. Chin	Generalized Planted (l, d)-Motif Problem with Negative Set.	WABI	2005	DBLP DOI BibTeX RDF
84	Soon-Heng Tan, Wing-Kin Sung, See-Kiong Ng	Discovering Novel Interacting Motif Pairs from Large Protein-Protein Interaction Datasets.	BIBE	2004	DBLP DOI BibTeX RDF
84	Hiroki Arimura, Takeaki Uno	An efficient polynomial space and polynomial delay algorithm for enumeration of maximal motifs in a sequence.	J. Comb. Optim.	2007	DBLP DOI BibTeX RDF	Maximal motif, Data mining, Algorithm, Delay, Polynomial time, Pattern discovery, Enumeration, Motif, Sequence mining, Closed pattern, Closed itemset
82	Saurabh Sinha	Discriminative motifs.	RECOMB	2002	DBLP DOI BibTeX RDF
80	Elena Zheleva, Abdullah N. Arslan	Fast Motif Search in Protein Sequence Databases.	CSR	2006	DBLP DOI BibTeX RDF	motif search, PROSITE pattern, heuristic, suffix tree, preprocessing, regular expression matching
74	Riccardo Dondi, Guillaume Fertin, Stéphane Vialette	Maximum Motif Problem in Vertex-Colored Graphs.	CPM	2009	DBLP DOI BibTeX RDF
74	Nadja Betzler, Michael R. Fellows, Christian Komusiewicz, Rolf Niedermeier	Parameterized Algorithms and Hardness Results for Some Graph Motif Problems.	CPM	2008	DBLP DOI BibTeX RDF
74	Shahar Michal, Tor Ivry, Omer Cohen, Moshe Sipper, Danny Barash	Finding a Common Motif of RNA Sequences Using Genetic Programming: The GeRNAMo System.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF
74	Sing-Hoi Sze, Xiaoyan Zhao	Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
74	Topon Kumar Paul, Hitoshi Iba	Identification of weak motifs in multiple biological sequences using genetic algorithm.	GECCO	2006	DBLP DOI BibTeX RDF	(l, d) motif, protein binding site, regulatory sites, genetic algorithm, clustering, DNA sequences, motif discovery
71	Osman Abul	MotifHider: A knowledge hiding approach to sequence masking.	ISCIS	2009	DBLP DOI BibTeX RDF
71	Menaka Rajapakse, Bertil Schmidt, Vladimir Brusic	Multi-Objective Evolutionary Algorithm for Discovering Peptide Binding Motifs.	EvoWorkshops	2006	DBLP DOI BibTeX RDF
71	Vipin Narang, Wing-Kin Sung, Ankush Mittal	LocalMotif - An In-Silico Tool for Detecting Localized Motifs in Regulatory Sequences.	ICTAI	2006	DBLP DOI BibTeX RDF
71	Jeremy Buhler, Martin Tompa	Finding motifs using random projections.	RECOMB	2001	DBLP DOI BibTeX RDF
70	Rupali Patwardhan, Haixu Tang, Sun Kim, Mehmet M. Dalkilic	An Approximate de Bruijn Graph Approach to Multiple Local Alignment and Motif Discovery in Protein Sequences.	VDMB	2006	DBLP DOI BibTeX RDF	proteins, Motif discovery, de Bruijn graph, local alignment
70	Shaun Mahony, David Hendrix, Terry J. Smith, Aaron Golden	Self-Organizing Maps of Position Weight Matrices for Motif Discovery in Biological Sequences.	Artif. Intell. Rev.	2005	DBLP DOI BibTeX RDF	biological motif discovery, self-organizing map
67	Viktor Martyanov, Larkin Elderon, Amy Gladfelter, Dhanalakshmi R. Nair, Robert H. Gross	Identifying Fungal Regulatory Motif Patterns Using SCOPE, an Ensemble Learning Method Motif Finder.	BIBE	2007	DBLP DOI BibTeX RDF
67	Takafumi Matsuura, Tohru Ikeguchi	Chaotic Motif Sampler for Motif Discovery Using Statistical Values of Spike Time-Series.	ICONIP (1)	2007	DBLP DOI BibTeX RDF
67	Geir Kjetil Sandve, Magnar Nedland, Øyvind Bø Syrstad, Lars Andreas Eidsheim, Osman Abul, Finn Drabløs	Accelerating Motif Discovery: Motif Matching on Parallel Hardware.	WABI	2006	DBLP DOI BibTeX RDF
66	K. R. Seeja, Mohd. Afshar Alam, S. K. Jain	MotifMiner: A Table Driven Greedy Algorithm for DNA Motif Mining.	ICIC (2)	2009	DBLP DOI BibTeX RDF	Regulatory motif, Greedy approach, Motif discovery, Information content
66	Bin Kuang, Nini Rao	A Two - Block Motif Discovery Method with Improved Accuracy.	ICIC (1)	2007	DBLP DOI BibTeX RDF	Motif Base, Accuracy, Gibbs Sampling, Motif Discovery, Pwm
66	Bill C. H. Chang, Asanga Ratnaweera, Saman K. Halgamuge, Harry C. Watson	Particle Swarm Optimisation for Protein Motif Discovery.	Genet. Program. Evolvable Mach.	2004	DBLP DOI BibTeX RDF	protein sequence motif, symbolic data optimisation, motif discovery, particle swarm optimisation
64	Alexandre P. Francisco, Arlindo L. Oliveira, Ana T. Freitas	Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph.	ISBRA	2008	DBLP DOI BibTeX RDF
64	Lifang Liu 0001, Licheng Jiao	Detection of Transcription Factor Binding Sites via Motif Clustering and Matching.	CSSE (1)	2008	DBLP DOI BibTeX RDF
64	Xi Li, Dianhui Wang	An Improved Genetic Algorithm for DNA Motif Discovery with Public Domain Information.	ICONIP (1)	2008	DBLP DOI BibTeX RDF
64	Derong Liu 0001, Xiaoxu Xiong, Bhaskar DasGupta, Huaguang Zhang	Motif discoveries in unaligned molecular sequences using self-organizing neural networks.	IEEE Trans. Neural Networks	2006	DBLP DOI BibTeX RDF
64	Brona Brejová, Daniel G. Brown 0001, Ian M. Harrower, Tomás Vinar	New Bounds for Motif Finding in Strong Instances.	CPM	2006	DBLP DOI BibTeX RDF
64	Paul Horton, Wataru Fujibuchi	An Upper Bound on the Hardness of Exact Matrix Based Motif Discovery.	CPM	2005	DBLP DOI BibTeX RDF
61	Christian Klukas, Falk Schreiber, Henning Schwöbbermeyer	Coordinated perspectives and enhanced force-directed layout for the analysis of network motifs.	APVIS	2006	DBLP DOI BibTeX RDF	coordinated perspectives, graph drawing, network analysis, multiple views, information visualisation, network motifs, force-directed layout
61	Paul Horton	Tsukuba BB: A Branch and Bound Algorithm for Local Multiple Sequence Alignment.	CPM	2000	DBLP DOI BibTeX RDF
60	Doaa Altarawy, Mohamed A. Ismail, Sahar Mohamed Ghanem	MProfiler: A Profile-Based Method for DNA Motif Discovery.	PRIB	2009	DBLP DOI BibTeX RDF	DNA Motif Finding, Clustering, Bioinformatics
60	Kazuhito Shida	Short Segment Frequency Equalization: A Simple and Effective Alternative Treatment of Background Models in Motif Discovery.	PRIB	2009	DBLP DOI BibTeX RDF	Markov background model, Eukaryotic promoters, Gibbs sampling, Motif discovery, Stochastic method
60	Mohammed Al-Shalalfa, Reda Alhajj	Motif Location Prediction by Divide and Conquer.	BIRD	2008	DBLP DOI BibTeX RDF	conserved motifs, divide and conquer, gene expression data, sequence analysis, motif discovery
60	Ting Gong, Jianhua Xuan, Li Chen 0018, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke	Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information.	ISBRA	2008	DBLP DOI BibTeX RDF	Motif analysis, transcriptional modules, estrogen receptor binding, gene regulatory networks, sparse component analysis
60	Alberto Apostolico, Matteo Comin, Laxmi Parida	Bridging Lossy and Lossless Compression by Motif Pattern Discovery.	GTIT-C	2006	DBLP DOI BibTeX RDF	lossy and lossless data compression, off-line textual substitution, grammar based codes, pattern matching, Pattern discovery, grammatical inference, motif
60	Eleazar Eskin	From profiles to patterns and back again: a branch and bound algorithm for finding near optimal motif profiles.	RECOMB	2004	DBLP DOI BibTeX RDF	patterns, profiles, transcription factor binding sites, motif-finding
57	Wangsen Feng, Zhanyong Wang, Lusheng Wang 0001	Identification of Distinguishing Motifs.	CPM	2007	DBLP DOI BibTeX RDF	motif detection, two groups, EM Algorithms
54	Santan Challa, Parimala Thulasiraman	Protein Sequence Motif Discovery on Distributed Supercomputer.	GPC	2008	DBLP DOI BibTeX RDF
54	Anjali Mohapatra, P. M. Mishra, S. Padhy	Motif Search in DNA Sequences Using Generalized Suffix Tree.	ICIT	2007	DBLP DOI BibTeX RDF
54	Jisu Kim, Byungkyu Park, Kyungsook Han	Prediction of Interacting Motif Pairs Using Stochastic Boosting.	FBIT	2007	DBLP DOI BibTeX RDF
54	Ya Zhang 0002, Yixin Chen 0002, Xiang Ji	Motif Discovery as a Multiple-Instance Problem.	ICTAI	2006	DBLP DOI BibTeX RDF
54	Audrey Girouard, Noah W. Smith, Donna K. Slonim	Motif Evaluation by Leave-one-out Scoring.	CIBCB	2006	DBLP DOI BibTeX RDF
54	Justin Schonfeld, Dan Ashlock	Filtration and Depth Annotation Improve Non-linear Projection for RNA Motif Discovery.	CIBCB	2006	DBLP DOI BibTeX RDF
51	Lifang Liu 0001, Licheng Jiao	Moitf GibbsGA: Sampling Transcription Factor Binding Sites Coupled with PSFM Optimization by GA.	ISICA	2009	DBLP DOI BibTeX RDF
51	Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli	An Interaction-Dependent Model for Transcription Factor Binding.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
51	Asim S. Siddiqui, Gordon Robertson, Misha Bilenky, Tamara Astakhova, Obi L. Griffith, Maik Hassel, Keven Lin, Stephen B. Montgomery, Mehrdad Oveisi, Erin Pleasance, Neil Robertson 0004, Monica C. Sleumer, Kevin Teague, Richard Varhol, Maggie Zhang, Steven J. M. Jones	cis-Regulatory Element Prediction in Mammalian Genomes.	CSB Workshops	2005	DBLP DOI BibTeX RDF
51	Saurabh Sinha, Martin Tompa	Performance Comparison of Algorithms for FindingTranscription Factor Binding Sites.	BIBE	2003	DBLP DOI BibTeX RDF
51	Yoshiki Tanaka, Kuniaki Uehara	Discover Motifs in Multi-dimensional Time-Series Using the Principal Component Analysis and the MDL Principle.	MLDM	2003	DBLP DOI BibTeX RDF
50	Yang Liu 0098, Xiaohong Jiang 0002, Huajun Chen, Jun Ma, Xiangyu Zhang	MapReduce-Based Pattern Finding Algorithm Applied in Motif Detection for Prescription Compatibility Network.	APPT	2009	DBLP DOI BibTeX RDF	motif detection, pattern finding, prescription compatibility, complex network, MapReduce
50	Jan Schröder, Lars Wienbrandt, Gerd Pfeiffer, Manfred Schimmler	Massively Parallelized DNA Motif Search on the Reconfigurable Hardware Platform COPACOBANA.	PRIB	2008	DBLP DOI BibTeX RDF	DNA sequence analysis, High Performance Reconfigurable Computing (HPRC), FPGA, Motif finding
50	Mustafa Karabulut, Turgay Ibrikci	Fuzzy C-Means Based DNA Motif Discovery.	ICIC (1)	2008	DBLP DOI BibTeX RDF	Fuzzy Clustering, DNA Sequences, Motif Finding
50	Mihail Halachev, Nematollaah Shiri	Fast Structured Motif Search in DNA Sequences.	BIRD	2008	DBLP DOI BibTeX RDF	performance, suffix tree, DNA sequences, structured motif
50	Mehmet Kaya	Motif Discovery Using Multi-Objective Genetic Algorithm in Biosequences.	IDA	2007	DBLP DOI BibTeX RDF	Multi-Objective Genetic Algorithms, Motif Discovery
50	Vered Kunik, Zach Solan, Shimon Edelman, Eytan Ruppin, David Horn	Motif Extraction and Protein Classification.	CSB	2005	DBLP DOI BibTeX RDF	motif extraction, enzyme classification
50	Benjamin J. Raphael, Lung-Tien Liu, George Varghese	A Uniform Projection Method for Motif Discovery in DNA Sequences.	IEEE ACM Trans. Comput. Biol. Bioinform.	2004	DBLP DOI BibTeX RDF	random projection, Motif discovery, combinatorial designs, low-discrepancy sequences, transcription factor binding sites
46	Alberto Apostolico, Claudia Tagliacollo	Optimal Offline Extraction of Irredundant Motif Bases.	COCOON	2007	DBLP DOI BibTeX RDF	Irredundant Motif, Pattern Matching, Design and Analysis of Algorithms, Motif Discovery, Basis
44	Bin Fu, Ming-Yang Kao, Lusheng Wang 0001	Efficient Algorithms for Model-Based Motif Discovery from Multiple Sequences.	TAMC	2008	DBLP DOI BibTeX RDF
44	Daniel Quest, Kathryn Dempsey, Mohammad Shafiullah, Dhundy Bastola, Hesham H. Ali	A parallel architecture for regulatory motif algorithm assessment.	IPDPS	2008	DBLP DOI BibTeX RDF
44	Ruoming Jin, Scott McCallen, Eivind Almaas	Trend Motif: A Graph Mining Approach for Analysis of Dynamic Complex Networks.	ICDM	2007	DBLP DOI BibTeX RDF
44	Bernard Chen 0001, Stephen Pellicer, Phang C. Tai, Robert W. Harrison, Yi Pan 0001	Super Granular Shrink-SVM Feature Elimination (Super GS-SVM-FE) Model for Protein Sequence Motif Information Extraction.	BIBE	2007	DBLP DOI BibTeX RDF
44	Jason Tsong-Li Wang, Dongrong Wen, Bruce A. Shapiro, Katherine G. Herbert, Jing Li, Kaushik Ghosh	Toward an Integrated RNA Motif Database.	DILS	2007	DBLP DOI BibTeX RDF
44	Erliang Zeng, Giri Narasimhan	Enhancing Motif Refinement by Incorporating Comparative Genomics Data.	ISBRA	2007	DBLP DOI BibTeX RDF
44	Huan Yu, Minping Qian, Minghua Deng	Using a Stochastic AdaBoost Algorithm to Discover Interactome Motif Pairs from Sequences.	ICIC (3)	2006	DBLP DOI BibTeX RDF
44	Yoshiki Tanaka, Kazuhisa Iwamoto, Kuniaki Uehara	Discovery of Time-Series Motif from Multi-Dimensional Data Based on MDL Principle.	Mach. Learn.	2005	DBLP DOI BibTeX RDF	time-series motifs, multi-dimensional time-series data, MDL principle good, PCA
44	Manuel Middendorf, Anshul Kundaje, Mihir Shah, Yoav Freund, Chris Wiggins 0001, Christina S. Leslie	Motif Discovery Through Predictive Modeling of Gene Regulation.	RECOMB	2005	DBLP DOI BibTeX RDF
44	Lusheng Wang 0001, Liang Dong, Hui Fan	Randomized Algorithms for Motif Detection.	ISAAC	2004	DBLP DOI BibTeX RDF
44	Zhaohui Sun, Jingyi Yang, Jitender S. Deogun	MISAE: A New Approach for Regulatory Motif Extraction.	CSB	2004	DBLP DOI BibTeX RDF
43	Peera Liewlom, Thanawin Rakthanmanon, Kitsana Waiyamai	Prediction of Enzyme Class by Using Reactive Motifs Generated from Binding and Catalytic Sites.	ADMA	2007	DBLP DOI BibTeX RDF	mutation control, sequence motif, reactive motif, enzyme function prediction, catalytic site, amino acid substitution group, binding site
41	Christina Boucher	Faster Algorithms for Sampling and Counting Biological Sequences.	SPIRE	2009	DBLP DOI BibTeX RDF
41	Pratibha Mehta Luthra, Sandeep Kumar Barodia, Amresh Prakash, Ramraghubir	cDNA-Derived Amino Acid Sequence from Rat Brain A2aR Possesses Conserved Motifs PMNYM of TM 5 Domain, Which May Be Involved in Dimerization of A2aR.	PRIB	2007	DBLP DOI BibTeX RDF	Adenosine A2a receptor, cDNA, GPCRs, RT-PCR, TM 5
41	Mehmet Kaya	A Multi-Objective Genetic Algorithm for Discovering Non-Dominated Motifs in DNA Sequences.	HIS	2007	DBLP DOI BibTeX RDF
41	Nadia Pisanti, Alexandra M. Carvalho, Laurent Marsan, Marie-France Sagot	RISOTTO: Fast Extraction of Motifs with Mismatches.	LATIN	2006	DBLP DOI BibTeX RDF
41	Hiroki Arimura, Takeaki Uno	A Polynomial Space and Polynomial Delay Algorithm for Enumeration of Maximal Motifs in a Sequence.	ISAAC	2005	DBLP DOI BibTeX RDF
41	Wengang Zhou, Chunguang Zhou, Guixia Liu, Yanxin Huang	Identification of Transcription Factor Binding Sites Using Hybrid Particle Swarm Optimization.	RSFDGrC (2)	2005	DBLP DOI BibTeX RDF
41	Fuqiang Ban, Savariraj Kingsley, Ross Johnson, Hicham Fenniri, Andriy Kovalenko 0001	Modeling the Zinc Chelating Rosette Nanotube.	ICMENS	2005	DBLP DOI BibTeX RDF
41	Rhonda Harrison, Charles DeLisi	A hypothesis driven approach to condition specific transcription factor binding site characterization in S.c..	SAC	2002	DBLP DOI BibTeX RDF
41	Laxmi Parida, Isidore Rigoutsos, Daniel E. Platt	An Output-Sensitive Flexible Pattern Discovery Algorithm.	CPM	2001	DBLP DOI BibTeX RDF
41	Erika Tateishi, Osamu Maruyama, Satoru Miyano	Extracting Best Consensus Motifs from Positive and Negative Examples.	STACS	1996	DBLP DOI BibTeX RDF	algorithms and computational complexity, genome informatics
39	Armando Muscariello, Guillaume Gravier, Frédéric Bimbot	Variability Tolerant Audio Motif Discovery.	MMM	2009	DBLP DOI BibTeX RDF	audio pattern discovery, variable motif, dynamic time warping, normalized edit distance
39	Jaime I. Dávila, Sudha Balla, Sanguthevar Rajasekaran	Fast and Practical Algorithms for Planted (l, d) Motif Search.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF	Planted motif search problem, challenging instances, exact algorithms, branch and bound algorithms
39	Michael A. Lones, Andy M. Tyrrell	Regulatory Motif Discovery Using a Population Clustering Evolutionary Algorithm.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF	population-based data clustering, muscle-specific gene expression, Evolutionary computation, motif discovery, transcription factor binding sites
39	Piedachu Peris, Damián López, Marcelino Campos, José M. Sempere	Protein Motif Prediction by Grammatical Inference.	ICGI	2006	DBLP DOI BibTeX RDF	protein motif location, bioinformatics, Grammatical inference
39	Michael A. Lones, Andrew M. Tyrrell	The evolutionary computation approach to motif discovery in biological sequences.	GECCO Workshops	2005	DBLP DOI BibTeX RDF	biological sequence understanding, evolutionary computation, motif discovery
37	Mehmet Kaya, Melikali Güç	A Novel Approach to Extract Structured Motifs by Multi-Objective Genetic Algorithm.	CBMS	2008	DBLP DOI BibTeX RDF	structured motif discovery, multi-objective genetic algorithm