Search results for "mpiblast"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
148	Pavan Balaji, Wu-chun Feng, Jeremy S. Archuleta, Heshan Lin, Rajkumar Kettimuthu, Rajeev Thakur, Xiaosong Ma	Semantics-based distributed I/O for mpiBLAST.	PPoPP	2008	DBLP DOI BibTeX RDF	distributed i/o, mpiblast
98	Douglas M. Jennewein	Experiences in Creating an OSCAR Package for mpiBLAST.	HPCS	2006	DBLP DOI BibTeX RDF
91	Oystein Thorsen, Brian E. Smith, Carlos P. Sosa, Karl Jiang, Heshan Lin, Amanda E. Peters, Wu-chun Feng	Parallel genomic sequence-search on a massively parallel system.	Conf. Computing Frontiers	2007	DBLP DOI BibTeX RDF	mpiBLAST-PIO, multiple masters parallelization, massively parallel computer, Blue Gene/L
62	Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng	A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search.	ICSM	2007	DBLP DOI BibTeX RDF
62	Heshan Lin, Xiaosong Ma, Praveen Chandramohan, Al Geist, Nagiza F. Samatova	Efficient Data Access for Parallel BLAST.	IPDPS	2005	DBLP DOI BibTeX RDF
50	Avery Ching, Wu-chun Feng, Heshan Lin, Xiaosong Ma, Alok N. Choudhary	Exploring I/O Strategies for Parallel Sequence-Search Tools with S3aSim.	HPDC	2006	DBLP DOI BibTeX RDF	parallel HMMer tool, parallel I/O strategy, parallel sequence-search tool, S3aSim framework, computational biologist, sequence database segmentation, master-writing strategy, worker-writing strategy, mpiBLAST tool, pioBLAST tool, search algorithm, parallel file system
41	Mark K. Gardner, Wu-chun Feng, Jeremy S. Archuleta, Heshan Lin, Xiaosong Ma	Grid applications - Parallel genomic sequence-searching on an ad-hoc grid: experiences, lessons learned, and implications.	SC	2006	DBLP DOI BibTeX RDF	sequence search, scheduling, fault tolerance, scalability, grid computing, bioinformatics, cluster computing, optical networking, scripting, agile development, BLAST
41	I. Elizabeth Cha, Eric C. Rouchka	Comparison of Current BLAST Software on Nucleotide Sequences.	IPDPS	2005	DBLP DOI BibTeX RDF
36	Michael Brock, Andrzej Goscinski	Execution of Compute Intensive Applications on Hybrid Clouds (Case Study with mpiBLAST).	CISIS	2012	DBLP DOI BibTeX RDF
36	Daniel R. Harris, Jerzy W. Jaromczyk, Christopher L. Schardl	Experimenting with database segmentation size vs time performance for mpiBLAST on an IBM HS21 blade cluster.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
36	Chao-Tung Yang, Tsu-Fen Han, Heng-Chuan Kan	G-BLAST: a Grid-based solution for mpiBLAST on computational Grids.	Concurr. Comput. Pract. Exp.	2009	DBLP DOI BibTeX RDF
36	Wu-chun Feng	Green Destiny + mpiBLAST = Bioinfomagic.	PARCO	2003	DBLP BibTeX RDF
29	Pavan Balaji, Wu-chun Feng, Heshan Lin	Semantic-based distributed i/o with the paramedic framework.	HPDC	2008	DBLP DOI BibTeX RDF	distributed i/o, mpiblast, paramedic
21	Chao-Tung Yang, Wen-Feng Hsieh, Hung-Yen Chen	Implementation of a Diskless Cluster Computing Environment in a Computer Classroom.	APSCC	2008	DBLP DOI BibTeX RDF
21	Heshan Lin, Pavan Balaji, Ruth Poole, Carlos P. Sosa, Xiaosong Ma, Wu-chun Feng	Massively parallel genomic sequence search on the Blue Gene/P architecture.	SC	2008	DBLP DOI BibTeX RDF
21	Zhaohui Ding, Xiaohui Wei, Yuan Luo, Da Ma, Peter W. Arzberger, Wilfred W. Li	Customized Plug-in Modules in Metascheduler CSF4 for Life Sciences Applications.	New Gener. Comput.	2007	DBLP DOI BibTeX RDF	Metascheduling, Scheduler Plug-in, Co-Allocation, Life Sciences, MPICH-G2
21	Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman	Symposium Evening Tutorial: High-performance Computing Methods for Computational Genomics.	IPDPS	2007	DBLP DOI BibTeX RDF
21	Erik S. Gough, Michael D. Kane	Evaluating Parallel Computing Systems in Bioinformatics.	ITNG	2006	DBLP DOI BibTeX RDF
21	Humaira Kamal, Brad Penoff, Mike Tsai, Edith Vong, Alan Wagner	Using SCTP to hide latency in MPI programs.	IPDPS	2006	DBLP DOI BibTeX RDF
21	Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman	M11 - High-performance computing methods for computational genomics.	SC	2006	DBLP DOI BibTeX RDF
21	Chao-Tung Yang, Yi-Chun Hsiung, Heng-Chuan Kan	Implementation and Evaluation of a Java Based Computational Grid for Bioinformatics Applications.	AINA	2005	DBLP DOI BibTeX RDF