Search results for "ncRNA"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
131	Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu	Structural Alignment of RNA with Complex Pseudoknot Structure.	WABI	2009	DBLP DOI BibTeX RDF	pseudoknots, Structural alignment, non-coding RNA
68	Thomas K. F. Wong, Siu-Ming Yiu, Tak Wah Lam, Wing-Kin Sung	The 2-Interval Pattern Matching Problems and Its Application to ncRNA Scanning.	BICoB	2009	DBLP DOI BibTeX RDF
65	Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna	Structural Alignment of Pseudoknotted RNA.	RECOMB	2006	DBLP DOI BibTeX RDF
65	Vineet Bafna, Shaojie Zhang	FastR: Fast Database Search Tool for Non-Coding RNA.	CSB	2004	DBLP DOI BibTeX RDF	non-coding RNA genes, dynamic programming, sequence alignment, RNA, filtration, database search
54	Matthias Zytnicki, Christine Gaspin, Thomas Schiex	DARN! A Weighted Constraint Solver for RNA Motif Localization.	Constraints An Int. J.	2008	DBLP DOI BibTeX RDF	DARN, RNA motif localization, ncRNA
48	Malik Yousef, Walid Khaleifa, Tugba Onal Suzek	In Silico Validation of ncRNA-ncRNA Interaction Sites with ncRNAs Represented by k-mers Features.	BIOINFORMATICS	2019	DBLP DOI BibTeX RDF
48	Feng Chen 0014, Yi-Ping Phoebe Chen	Exploring the ncRNA-ncRNA patterns based on bridging rules.	J. Biomed. Informatics	2010	DBLP DOI BibTeX RDF
44	Marcin Kubica, Romeo Rizzi, Stéphane Vialette, Tomasz Walen	Approximation of RNA Multiple Structural Alignment.	CPM	2006	DBLP DOI BibTeX RDF
44	Zasha Weinberg, Walter L. Ruzzo	Faster genome annotation of non-coding RNA families without loss of accuracy.	RECOMB	2004	DBLP DOI BibTeX RDF	covariance models, gene families, genome annotation, histone downstream element, hyperthermophile archaea snoRNA, iron response element, rigorous filter, profile hidden Markov models, non-coding RNA
33	Roberto T. Arrial, Roberto C. Togawa, Marcelo M. Brigido	Outlining a Strategy for Screening Non-coding RNAs on a Transcriptome Through Support Vector Machines.	BSB	2007	DBLP DOI BibTeX RDF	ncRNA, Paracoccidioides brasiliensis, machine learning, Support Vector Machines, non-coding RNA, transcriptome
24	Xiaoyi Li, Wenyan Qu, Jing Yan, Jianjun Tan	RPI-EDLCN: An Ensemble Deep Learning Framework Based on Capsule Network for ncRNA-Protein Interaction Prediction.	J. Chem. Inf. Model.	2024	DBLP DOI BibTeX RDF
24	Yi Zhang 0044, Xuanzhao Li	Empowering Graph Neural Networks with Block-Based Dual Adaptive Deep Adjustment for Drug Resistance-Related NcRNA Discovery.	J. Chem. Inf. Model.	2024	DBLP DOI BibTeX RDF
24	Jing Yan, Wenyan Qu, Xiaoyi Li, Ruobing Wang, Jianjun Tan	GATLGEMF: A graph attention model with line graph embedding multi-complex features for ncRNA-protein interactions prediction.	Comput. Biol. Chem.	2024	DBLP DOI BibTeX RDF
24	Tong Tang, Xingyun Liu, Rongrong Wu, Li Shen, Shumin Ren, Bairong Shen	CTRR-ncRNA: A Knowledgebase for Cancer Therapy Resistance and Recurrence Associated Non-coding RNAs.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
24	Li Guo, Yangyang Xiang, Yuyang Dou, Zibo Yin, Xinru Xu, Lihua Tang, Jiafeng Yu, Jun Wang 0031, Tingming Liang	GBCdb: RNA expression landscapes and ncRNA-mRNA interactions in gallbladder carcinoma.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
24	Faroza Shamsheem, Tunga Arundhathi, Khaleda Afroaz	Prediction of ncRNA from RNA-Seq data using machine learning techniques.	Int. J. Bioinform. Res. Appl.	2023	DBLP DOI BibTeX RDF
24	Kai Chen, Xiaodong Zhu 0001, Jiahao Wang, Ziqi Zhao, Lei Hao, Xinsheng Guo, Yuanning Liu	MFPred: prediction of ncRNA families based on multi-feature fusion.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
24	Yu Zheng 0030, Huaxia Luo, XueYi Teng, Xinpei Hao, Xiaoyu Yan, Yiheng Tang, Wanyu Zhang, Yuanxin Wang, Peng Zhang 0047, Yanyan Li, Yi Zhao, Runsheng Chen, Shunmin He	NPInter v5.0: ncRNA interaction database in a new era.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
24	Jinhang Wei, Linlin Zhuo, Shiyao Pan, Xinze Lian, Xiaojun Yao, Xiangzheng Fu	HeadTailTransfer: An efficient sampling method to improve the performance of graph neural network method in predicting sparse ncRNA-protein interactions.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
24	Zhecheng Zhou, Zhenya Du, Jinhang Wei, Linlin Zhuo, Shiyao Pan, Xiangzheng Fu, Xinze Lian	MHAM-NPI: Predicting ncRNA-protein interactions based on multi-head attention mechanism.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
24	Zhiwei Ning, Jinyang Wu, Yidong Ding, Ying Wang, Qinke Peng, Laiyi Fu	BertNDA: A Model Based on Graph-Bert and Multi-Scale Information Fusion for ncRNA-Disease Association Prediction.	IEEE J. Biomed. Health Informatics	2023	DBLP DOI BibTeX RDF
24	Junpeng Zhang 0001, Lin Liu, Xuemei Wei, Chunwen Zhao, Sijing Li, Jiuyong Li, Thuc Duy Le	Pan-cancer characterization of ncRNA synergistic competition uncovers potential carcinogenic biomarkers.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
24	Songtham Anuntakarun, Supatcha Lertampaiporn, Teeraphan Laomettachit, Warin Wattanapornprom, Marasri Ruengjitchatchawalya	mSRFR: a machine learning model using microalgal signature features for ncRNA classification.	BioData Min.	2022	DBLP DOI BibTeX RDF
24	Haohao Zhou, Hao Wang, Jijun Tang, Yijie Ding, Fei Guo 0001	Identify ncRNA Subcellular Localization via Graph Regularized $k$k-Local Hyperplane Distance Nearest Neighbor Model on Multi-Kernel Learning.	IEEE ACM Trans. Comput. Biol. Bioinform.	2022	DBLP DOI BibTeX RDF
24	Ningyi Zhang, Tianyi Zang	A multi-network integration approach for measuring disease similarity based on ncRNA regulation and heterogeneous information.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
24	Gui-Yan Xie, Chun-Jie Liu, An-Yuan Guo	EVAtool: an optimized reads assignment tool for small ncRNA quantification and its application in extracellular vesicle datasets.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
24	Linlin Zhuo, Bosheng Song, Yuansheng Liu, Zejun Li, Xiangzheng Fu	Predicting ncRNA-protein interactions based on dual graph convolutional network and pairwise learning.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
24	Xing Chen 0001, Li Huang	Computational model for ncRNA research.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
24	Siyu Han, Xiao Yang, Hang Sun, Hu Yang, Qi Zhang 0061, Cheng Peng, Wensi Fang, Ying Li	LION: an integrated R package for effective prediction of ncRNA-protein interaction.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
24	Jun Cheng, Yunqing Lin, Linfu Xu, Kechen Chen, Qi Li, Kaixin Xu, Lin Ning, Juanjuan Kang, Tianyu Cui, Yan Huang, Xiaoyang Zhao, Dong Wang 0011, Yanhui Li, Xi Su, Bin Yang	ViRBase v3.0: a virus and host ncRNA-associated interaction repository with increased coverage and annotation.	Nucleic Acids Res.	2022	DBLP DOI BibTeX RDF
24	Chun-Jie Liu, Gui-Yan Xie, Ya-Ru Miao, Meng-Xuan Xia, Yi Wang, Qian Lei, Qiong Zhang, An-Yuan Guo	EVAtlas: a comprehensive database for ncRNA expression in human extracellular vesicles.	Nucleic Acids Res.	2022	DBLP DOI BibTeX RDF
24	Han Yu, Zi-Ang Shen, Pu-Feng Du	NPI-RGCNAE: Fast Predicting ncRNA-Protein Interactions Using the Relational Graph Convolutional Network Auto-Encoder.	IEEE J. Biomed. Health Informatics	2022	DBLP DOI BibTeX RDF
24	Daobin Huang, Mingquan Ye, Jie Chang 0001, Yuting Liu, Ling Zhang	ncRNA-Protein Interaction Prediction using Convolutional Architecture with Cross-correlation Information.	ICBBT	2022	DBLP DOI BibTeX RDF
24	Jingjing Wang, Yanpeng Zhao, Weikang Gong, Yang Liu, Mei Wang, Xiaoqian Huang, Jianjun Tan	EDLMFC: an ensemble deep learning framework with multi-scale features combination for ncRNA-protein interaction prediction.	BMC Bioinform.	2021	DBLP DOI BibTeX RDF
24	Zi-Ang Shen, Tao Luo, Yuan-Ke Zhou, Han Yu, Pu-Feng Du	NPI-GNN: Predicting ncRNA-protein interactions with deep graph neural networks.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
24	Lin Ning, Tianyu Cui, Boyang Zheng, Nuo Wang, Jiaxin Luo, Beilei Yang, Mengze Du, Jun Cheng, Yiying Dou, Dong Wang 0011	MNDR v3.0: mammal ncRNA-disease repository with increased coverage and annotation.	Nucleic Acids Res.	2021	DBLP DOI BibTeX RDF
24	Paul D. Donovan, Natalie M. McHale, Morten T. Venø, Jochen H. M. Prehn	tsRNAsearch: a pipeline for the identification of tRNA and ncRNA fragments from small RNA-sequencing data.	Bioinform.	2021	DBLP DOI BibTeX RDF
24	Hai-Cheng Yi, Zhu-Hong You, Mei-Neng Wang, Zhen-Hao Guo, Yan-Bin Wang, Ji-Ren Zhou	RPI-SE: a stacking ensemble learning framework for ncRNA-protein interactions prediction using sequence information.	BMC Bioinform.	2020	DBLP DOI BibTeX RDF
24	Rituparno Sen, Jörg Fallmann, Maria Emília M. T. Walter, Peter F. Stadler	Are spliced ncRNA host genes distinct classes of lncRNAs?	Theory Biosci.	2020	DBLP DOI BibTeX RDF
24	Antonio Mora	Gene set analysis methods for the functional interpretation of non-mRNA data - Genomic range and ncRNA data.	Briefings Bioinform.	2020	DBLP DOI BibTeX RDF
24	XueYi Teng, Xiaomin Chen, Hua Xue, Yiheng Tang, Peng Zhang 0047, Quan Kang, Yajing Hao 0001, Runsheng Chen, Yi Zhao, Shunmin He	NPInter v4.0: an integrated database of ncRNA interactions.	Nucleic Acids Res.	2020	DBLP DOI BibTeX RDF
24	Jiang Li, Yawen Xue, Muhammad Talal Amin, Yanbo Yang, Jiajun Yang, Wen Zhang 0008, Wenqian Yang, Xiaohui Niu, Hong-Yu Zhang, Jing Gong	ncRNA-eQTL: a database to systematically evaluate the effects of SNPs on non-coding RNA expression across cancer types.	Nucleic Acids Res.	2020	DBLP DOI BibTeX RDF
24	Patrick Meylan, René Dreos, Giovanna Ambrosini, Romain Groux, Philipp Bucher	EPD in 2020: enhanced data visualization and extension to ncRNA promoters.	Nucleic Acids Res.	2020	DBLP DOI BibTeX RDF
24	Yizhang Jiang, Jiaqi Zhu, Xiaoqing Gu, Jing Xue, Kaifa Zhao, Tongguang Ni, Pengjiang Qian	Recognition of Large-Scale ncRNA Data Using a Novel Multitask Cross-Learning 0-Order TSK Fuzzy Classifier.	J. Medical Imaging Health Informatics	2020	DBLP DOI BibTeX RDF
24	Qiguo Dai, Zhaowei Wang 0005, Jinmiao Song, Xiaodong Duan, Maozu Guo 0001, Zhen Tian	A Stacked Ensemble Learning Framework with Heterogeneous Feature Combinations for Predicting ncRNA-Protein Interaction.	BIBM	2020	DBLP DOI BibTeX RDF
24	Murilo Montanini Breve, Fabrício Martins Lopes	A Simplified Complex Network-Based Approach to mRNA and ncRNA Transcript Classification.	BSB	2020	DBLP DOI BibTeX RDF
24	Xiaoqing Gu, Tongguang Ni, Yiqing Fan	A Fast and Robust Support Vector Machine With Anti-Noise Convex Hull and its Application in Large-Scale ncRNA Data Classification.	IEEE Access	2019	DBLP DOI BibTeX RDF
24	Emanuele Rossi, Federico Monti, Michael M. Bronstein, Pietro Liò	ncRNA Classification with Graph Convolutional Networks.	CoRR	2019	DBLP BibTeX RDF
24	Shuping Cheng, Lu Zhang, Jianjun Tan, Weikang Gong, Chunhua Li, Xiaoyi Zhang	DM-RPIs: Predicting ncRNA-protein interactions using stacked ensembling strategy.	Comput. Biol. Chem.	2019	DBLP DOI BibTeX RDF
24	Mohan Vamsi Kasukurthi, Shengyu Li, Glen M. Borchert, Jingshan Huang, Dihua Zhang, Mika Housevera, Yulong Huang, Shaobo Tan, Bin Ma 0003, Dongqi Li, Ryan Benton, Jingwei Lin	SURFr: Algorithm for identification and analysis of ncRNA-derived RNAs.	BIBM	2019	DBLP DOI BibTeX RDF
24	Tianyu Cui, Lin Zhang, Yan Huang, Ying Yi, Puwen Tan, Yue Zhao, Yongfei Hu, Liyan Xu, Enmin Li, Dong Wang 0011	MNDR v2.0: an updated resource of ncRNA-disease associations in mammals.	Nucleic Acids Res.	2018	DBLP DOI BibTeX RDF
24	Liang Cheng 0006, Yang Hu 0008, Jie Sun 0021, Meng Zhou 0003, Qinghua Jiang	DincRNA: a comprehensive web-based bioinformatics toolkit for exploring disease associations and ncRNA function.	Bioinform.	2018	DBLP DOI BibTeX RDF
24	Xiaoqing Gu, Korris Fu-Lai Chung, Shitong Wang 0001	Fast convex-hull vector machine for training on large-scale ncRNA data classification tasks.	Knowl. Based Syst.	2018	DBLP DOI BibTeX RDF
24	Takuya Mori, Hayliang Ngouv, Morihiro Hayashida, Tatsuya Akutsu, Jose C. Nacher	ncRNA-disease association prediction based on sequence information and tripartite network.	BMC Syst. Biol.	2018	DBLP DOI BibTeX RDF
24	Zhaohui Zhan, Zhu-Hong You, Yong Zhou 0003, Li-Ping Li, Zheng-Wei Li	Efficient Framework for Predicting ncRNA-Protein Interactions Based on Sequence Information by Deep Learning.	ICIC (2)	2018	DBLP DOI BibTeX RDF
24	Miguel Pignatelli, Albert J. Vilella, Matthieu Muffato, Leo Gordon, Simon White, Paul Flicek, Javier Herrero	ncRNA orthologies in the vertebrate lineage.	Database J. Biol. Databases Curation	2016	DBLP DOI BibTeX RDF
24	Lustiana Pratiwi, Yun-Huoy Choo, Azah Kamilah Muda	A Review on Hierarchical Clustering-Based Covariance Model to ncRNA Identification.	SoCPaR	2016	DBLP DOI BibTeX RDF
24	Yanhui Li, Changliang Wang, Zhengqiang Miao, Xiaoman Bi, Deng Wu, Nana Jin, Liqiang Wang, Hao Wu, Kun Qian, Chunhua Li, Ting Zhang, Chunrui Zhang, Ying Yi, Hongyan Lai, Yongfei Hu, Lixin Cheng, Kwong-Sak Leung, Xiaobo Li, Fengmin Zhang, Kongning Li, Xia Li 0004, Dong Wang 0011	ViRBase: a resource for virus-host ncRNA-associated interactions.	Nucleic Acids Res.	2015	DBLP DOI BibTeX RDF
24		RNAcentral: an international database of ncRNA sequences.	Nucleic Acids Res.	2015	DBLP DOI BibTeX RDF
24	Youri Hoogstrate, Guido Jenster, Elena S. Martens-Uzunova	FlaiMapper: computational annotation of small ncRNA-derived fragments using RNA-seq high-throughput data.	Bioinform.	2015	DBLP DOI BibTeX RDF
24	Ping Ge, Cuncong Zhong, Shaojie Zhang	ProbeAlign: incorporating high-throughput sequencing-based structure probing information into ncRNA homology search.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
24	Jiao Yuan, Wei Wu 0025, Chaoyong Xie, Guoguang Zhao, Yi Zhao, Runsheng Chen	NPInter v2.0: an updated database of ncRNA interactions.	Nucleic Acids Res.	2014	DBLP DOI BibTeX RDF
24	Jun-Hao Li, Shun Liu, Hui Zhou 0006, Liang-Hu Qu, Jian-Hua Yang	starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.	Nucleic Acids Res.	2014	DBLP DOI BibTeX RDF
24	Li Guo, Yang Zhao, Sheng Yang, Hui Zhang, Feng Chen 0032	An Integrative Analysis of ncRNA-mRNA Using Co-expression Network to Discover Potential Contributions of Coding-non-coding RNA Clusters.	IWBBIO	2014	DBLP BibTeX RDF
24	Jikai Lei, Prapaporn Techa-angkoon, Yanni Sun	Chain-RNA: A Comparative ncRNA Search Tool Based on the Two-Dimensional Chain Algorithm.	IEEE ACM Trans. Comput. Biol. Bioinform.	2013	DBLP DOI BibTeX RDF
24	Cheng Yuan, Yanni Sun	Efficient known ncRNA search including pseudoknots.	BMC Bioinform.	2013	DBLP DOI BibTeX RDF
24	Frida Belinky, Iris Bahir, Gil Stelzer, Shahar Zimmerman, Naomi Rosen, Noam Nativ, Irina Dalah, Tsippi Iny Stein, Noa Rappaport, Toutai Mituyama, Marilyn Safran, Doron Lancet	Non-redundant compendium of human ncRNA genes in GeneCards.	Bioinform.	2013	DBLP DOI BibTeX RDF
24	Nathaniel McVicar, Walter L. Ruzzo, Scott Hauck	Accelerating ncRNA homology search with FPGAs.	FPGA	2013	DBLP DOI BibTeX RDF
24	Wosley Arruda, Célia Ghedini Ralha, Tainá Raiol, Marcelo M. Brigido, Maria Emília M. T. Walter, Peter F. Stadler	ncRNA-Agents: A Multiagent System for Non-coding RNA Annotation.	BSB	2013	DBLP DOI BibTeX RDF
24	Yanni Sun, Jeremy Buhler, Cheng Yuan	Designing Filters for Fast-Known NcRNA Identification.	IEEE ACM Trans. Comput. Biol. Bioinform.	2012	DBLP DOI BibTeX RDF
24	Yanni Sun, Osama Aljawad, Jikai Lei, Alex Liu	Genome-scale NCRNA homology search using a Hamming distance-based filtration strategy.	BMC Bioinform.	2012	DBLP DOI BibTeX RDF
24	Dimitris Kleftogiannis, Konstantinos A. Theofilatos, Stergios Papadimitriou, Athanasios K. Tsakalidis, Spiros Likothanassis, Seferina Mavroudi	ncRNA-Class Web Tool: Non-coding RNA Feature Extraction and Pre-miRNA Classification Web Tool.	AIAI (2)	2012	DBLP DOI BibTeX RDF
24	Mario Fasold, David Langenberger, Hans Binder, Peter F. Stadler, Steve Hoffmann	DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments.	Nucleic Acids Res.	2011	DBLP DOI BibTeX RDF
24	Rujira Achawanantakun, Yanni Sun, Seyedeh Shohreh Takyar	Ncrna Consensus Secondary Structure Derivation Using Grammar Strings.	J. Bioinform. Comput. Biol.	2011	DBLP DOI BibTeX RDF
24	Osama Aljawad, Yanni Sun, Alex Liu, Jikai Lei	NcRNA homology search using Hamming distance seeds.	BCB	2011	DBLP DOI BibTeX RDF
24	Jose C. Nacher, N. Araki	Structural characterization and modeling of ncRNA-protein interactions.	Biosyst.	2010	DBLP DOI BibTeX RDF
24	Satish Chikkagoudar, Dennis R. Livesay, Usman Roshan	PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences.	Nucleic Acids Res.	2010	DBLP DOI BibTeX RDF
24	Dominic Rose	The long and the short of computational ncRNA prediction		2010	RDF
24	Kazutaka Katoh, Hiroyuki Toh	Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
24	Kiyoshi Asai, Hisanori Kiryu, Michiaki Hamada, Yasuo Tabei, Kengo Sato, Hiroshi Matsui, Yasubumi Sakakibara, Goro Terai, Toutai Mituyama	Software.ncrna.org: web servers for analyses of RNA sequences.	Nucleic Acids Res.	2008	DBLP DOI BibTeX RDF
24	Quan Zou 0001, Maozu Guo 0001, Yang Liu 0006, Zhi-An Xing	A Novel Comparative Sequence Analysis Method for ncRNA Secondary Structure Prediction without Multiple Sequence Alignment.	ICNC (5)	2008	DBLP DOI BibTeX RDF
24	Yair Horesh, Tirza Doniger, Shulamit Michaeli, Ron Unger	RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
24	Adrienne X. Wang, Walter L. Ruzzo, Martin Tompa	How accurately is ncRNA aligned within whole-genome multiple alignments?	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
24	Kazuya Ogasawara, Satoshi Kobayashi	Stochastically Approximating Tree Grammars by Regular Grammars and Its Application to Faster ncRNA Family Annotation.	LATA	2007	DBLP BibTeX RDF
24	Shaojie Zhang, Ilya Borovok, Yair Aharonowitz, Roded Sharan, Vineet Bafna	A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements.	ISMB (Supplement of Bioinformatics)	2006	DBLP DOI BibTeX RDF
24	Scott F. Smith 0002	Covariance Searches for ncRNA Gene Finding.	CIBCB	2006	DBLP DOI BibTeX RDF
24	Yair Horesh, Ron Unger	A bottom-up clustering algorithm to detect ncRNA molecules with a common secondary structure.	Int. J. Bioinform. Res. Appl.	2005	DBLP DOI BibTeX RDF
22	Ning Yu, Kyu Hong Cho, Qiang Cheng, Rafael A. Tesorero	A Hybrid Computational Approach for the Prediction of Small Non-coding RNAs from Genome Sequences.	CSE (2)	2009	DBLP DOI BibTeX RDF
22	Sarah Lopez, Guoqing Lu, Zhengxin Chen	Modeling miRNA data.	SAC	2007	DBLP DOI BibTeX RDF	miRNA, XML, database, relational database, data modeling
22	Shaojie Zhang, Brian Haas, Eleazar Eskin, Vineet Bafna	Searching Genomes for Noncoding RNA Using FastR.	IEEE ACM Trans. Comput. Biol. Bioinform.	2005	DBLP DOI BibTeX RDF	Noncoding RNA, riboswitch, bacterial genome, filtration, database search
22	Eugene Davydov, Serafim Batzoglou	A Computational Model for RNA Multiple Structural Alignment..	CPM	2004	DBLP DOI BibTeX RDF
22	Jin-Wu Nam, Je-Gun Joung, Y. S. Ahn, Byoung-Tak Zhang	Two-Step Genetic Programming for Optimization of RNA Common-Structure.	EvoWorkshops	2004	DBLP DOI BibTeX RDF