Search results for "oligonucleotides"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
111	Hong Bi, Junghuei Chen, Russell J. Deaton, Max H. Garzon, Harvey Rubin, David Harlan Wood	In vitro selection of non-crosshybridizing oligonucleotides for computation.	Nat. Comput.	2003	DBLP DOI BibTeX RDF	word design, DNA computing
111	Russell J. Deaton, Junghuei Chen, Hong Bi, Max H. Garzon, Harvey Rubin, David Harlan Wood	A PCR-based Protocol for In Vitro Selection of Non-crosshybridizing Oligonucleotides.	DNA	2002	DBLP DOI BibTeX RDF
77	Russell J. Deaton, Junghuei Chen, Jin Woo Kim, Max H. Garzon, David Harlan Wood	Test Tube Selection of Large Independent Sets of DNA Oligonucleotides.	Nanotechnology: Science and Computation	2006	DBLP DOI BibTeX RDF
77	Russell J. Deaton, Junghuei Chen, Hong Bi, John A. Rose	A Software Tool for Generating Non-crosshybridizing Libraries of DNA Oligonucleotides.	DNA	2002	DBLP DOI BibTeX RDF
69	Clint Morgan, Darko Stefanovic, Cristopher Moore, Milan N. Stojanovic	Building the Components for a Biomolecular Computer.	DNA	2004	DBLP DOI BibTeX RDF
52	Alexander Schliep, Roland Krause	Efficient Algorithms for the Computational Design of Optimal Tiling Arrays.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	Graph Theory, Biology and genetics
52	Zuwairie Ibrahim, Tri Basuki Kurniawan, Marzuki Khalid	A DNA sequence design for molecular computation of HPP with output visualization based on real-time PCR.	IEEE Congress on Evolutionary Computation	2007	DBLP DOI BibTeX RDF
52	Zuwairie Ibrahim, Yusei Tsuboi, Osamu Ono, Marzuki Khalid	Improving Initial Pool Generation of Direct-Proportional Length-Based DNA Computing by Parallel Overlap Assembly.	WSTST	2005	DBLP DOI BibTeX RDF
42	Junghuei Chen, Russell J. Deaton, Max H. Garzon, Jin Woo Kim, David Harlan Wood, Hong Bi, Dylan Carpenter, Yu-Zhen Wang	Characterization of Non-crosshybridizing DNA Oligonucleotides Manufactured in vitro.	Nat. Comput.	2006	DBLP DOI BibTeX RDF	melting temperature, word design, nanotechnology, DNA computing
42	Junghuei Chen, Russell J. Deaton, Max H. Garzon, Jin Woo Kim, David Harlan Wood, Hong Bi, Dylan Carpenter, Yu-Zhen Wang	Characterization of Non-crosshybridizing DNA Oligonucleotides Manufactured In Vitro.	DNA	2004	DBLP DOI BibTeX RDF
36	Dimitris Margaritis 0001, Steven Skiena	Reconstructing Strings from Substrings in Rounds.	FOCS	1995	DBLP DOI BibTeX RDF	string reconstruction, combinatorial bounds, substring queries, sequencing by hybridization, oligonucleotides, de novo sequencing, large DNA fragments, SBH, interaction, parallelism, pattern matching, string matching, DNA, biology computing, rounds, substrings
35	Max H. Garzon, Tit-Yee Wong, Vinhthuy T. Phan	DNA Chips for Species Identification and Biological Phylogenies.	DNA	2009	DBLP DOI BibTeX RDF	DNA codeword design, noncrosshybridizing oligonucleotide bases, genomic signatures, DNA chips, 16S rRNA tree of life, phylogenetic analysis
35	Yeow Meng Chee, San Ling	Improved Lower Bounds for Constant GC-Content DNA Codes.	IEEE Trans. Inf. Theory	2008	DBLP DOI BibTeX RDF
35	Qinru Qiu, Prakash Mukre, Morgan Bishop, Daniel J. Burns, Qing Wu 0002	Hardware Acceleration for Thermodynamic Constrained DNA Code Generation.	DNA	2007	DBLP DOI BibTeX RDF
35	Alexander Schliep, Roland Krause	Efficient Computational Design of Tiling Arrays Using a Shortest Path Approach.	WABI	2007	DBLP DOI BibTeX RDF
35	Zuwairie Ibrahim, Yusei Tsuboi, Mohd Saufee Muhammad, Osamu Ono, Marzuki Khalid	DNA implementation of k-shortest paths computation.	Congress on Evolutionary Computation	2005	DBLP DOI BibTeX RDF
25	Payam Kelich, Huanhuan Zhao, Jose R. Orona, Lela Vukovic	BinderSpace: A package for sequence space analyses for datasets of affinity-selected oligonucleotides and peptide-based molecules.	J. Comput. Chem.	2023	DBLP DOI BibTeX RDF
25	Thomas Binet, Séverine Padiolleau-Lefèvre, Stéphane Octave, Bérangère Avalle, Irene Maffucci	Comparative Study of Single-stranded Oligonucleotides Secondary Structure Prediction Tools.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
25	Thomas Binet, Bérangère Avalle, Miraine Dávila Felipe, Irene Maffucci	AptaMat: a matrix-based algorithm to compare single-stranded oligonucleotides secondary structures.	Bioinform.	2023	DBLP DOI BibTeX RDF
25	Shuntaro Chiba, Kenji Rowel Q. Lim, Narin Sheri, Saeed Anwar, Esra Erkut, Md Nur Ahad Shah, Tejal Aslesh, Stanley Woo, Omar Sheikh, Rika Maruyama, Hiroaki Takano, Katsuhiko Kunitake, William Duddy, Yasushi Okuno, Yoshitsugu Aoki, Toshifumi Yokota	eSkip-Finder: a machine learning-based web application and database to identify the optimal sequences of antisense oligonucleotides for exon skipping.	Nucleic Acids Res.	2021	DBLP DOI BibTeX RDF
25	Cheryl M. Armstrong, Joe Lee, Andrew G. Gehring, Joseph A. Capobianco	Flow-Through Electrochemical Biosensor for the Detection of Listeria monocytogenes Using Oligonucleotides.	Sensors	2021	DBLP DOI BibTeX RDF
25	Pushkala Jayaraman, Timothy Mosbruger, Taishan Hu, Nikolaos G. Tairis, Chao Wu, Peter M. Clark, Monica D'arcy, Deborah Ferriola, Katarzyna Mackiewicz, Xiaowu Gai, Dimitrios Monos, Mahdi Sarmady	AnthOligo: automating the design of oligonucleotides for capture/enrichment technologies.	Bioinform.	2020	DBLP DOI BibTeX RDF
25	Nor Diyana Md. Sani, Eda Yuhana Ariffin, Wong Sheryn, Mohd Asyraf Shamsuddin, Lee Yook Heng, Jalifah Latip, Siti Aishah Hasbullah, Nurul Izzaty Hassan	An Electrochemical DNA Biosensor for Carcinogenicity of Anticancer Compounds Based on Competition between Methylene Blue and Oligonucleotides.	Sensors	2019	DBLP DOI BibTeX RDF
25	Marek C. Milewski, Karol Kamel, Anna Kurzynska-Kokorniak, Marcin K. Chmielewski, Marek Figlerowicz	EvOligo: A Novel Software to Design and Group Libraries of Oligonucleotides Applicable for Nucleic Acid-Based Experiments.	J. Comput. Biol.	2017	DBLP DOI BibTeX RDF
25	Eberhard Schmitt, Jenny Wagner, Michael Hausmann	Combinatorial selection of short triplex forming oligonucleotides for fluorescence in situ hybridisation COMBO-FISH.	J. Comput. Sci.	2012	DBLP DOI BibTeX RDF
25	Nathan L. Clement, Quinn Snell, Mark J. Clement, Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson	The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing.	Bioinform.	2010	DBLP DOI BibTeX RDF
25	G. Golfier, Sophie Lemoine, A. van Miltenberg, A. Bendjoudi, J. Rossier, Stéphane Le Crom, Marie-Claude Potier	Selection of oligonucleotides for whole-genome microarrays with semi-automatic update.	Bioinform.	2009	DBLP DOI BibTeX RDF
25	You Jung Kim, Nikhil Teletia, Victor Ruotti, Christopher A. Maher, Arul M. Chinnaiyan, Ron M. Stewart, James A. Thomson, Jignesh M. Patel	ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches.	Bioinform.	2009	DBLP DOI BibTeX RDF
25	Zehra Banu Bahsi, Aligül Büyükaksoy, Sinan Mert Ölmezcan, Fethi Simsek, Muhammed Hasan Aslan, Ahmet Yavuz Oral	A Novel Label-Free Optical Biosensor Using Synthetic Oligonucleotides from E. coli O157: H7: Elementary Sensitivity Tests.	Sensors	2009	DBLP DOI BibTeX RDF
25	Olivier Croce, François Chevenet, Richard Christen	OligoHeatMap (OHM): an online tool to estimate and display hybridizations of oligonucleotides onto DNA sequences.	Nucleic Acids Res.	2008	DBLP DOI BibTeX RDF
25	Hui Jiang 0002, Wing Hung Wong	SeqMap: mapping massive amount of oligonucleotides to the genome.	Bioinform.	2008	DBLP DOI BibTeX RDF
25	Guangan Hu, Manuel Llinás, Jingguang Li, Peter Rainer Preiser, Zbynek Bozdech	Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
25	Chun-Chi Liu, Chin-Chung Lin, Ker-Chau Li, Wen-Shyen E. Chen, Jiun-Ching Chen, Ming-Te Yang, Pan-Chyr Yang, Pei-Chun Chang, Jeremy J. W. Chen	Genome-wide identification of specific oligonucleotides using artificial neural network and computational genomic analysis.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
25	Wei Li 0036, Jason S. Carroll, Myles Brown, Xiaole Shirley Liu	xMAN: extreme MApping of oligoNucleotides.	BIOCOMP	2007	DBLP BibTeX RDF
25	Xiaochen Bo, Shaoke Lou, Daochun Sun, Wenjie Shu, Jing Yang, Shengqi Wang	Selection of antisense oligonucleotides based on multiple predicted target mRNA structures.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
25	Xiaochen Bo, Shaoke Lou, Daochun Sun, Jing Yang, Shengqi Wang	AOBase: a database for antisense oligonucleotides selection and design.	Nucleic Acids Res.	2006	DBLP DOI BibTeX RDF
25	Eric K. Nordberg	YODA: selecting signature oligonucleotides.	Bioinform.	2005	DBLP DOI BibTeX RDF
25	Heikki Hyyrö, Martti Juhola, Mauno Vihinen	On exact string matching of unique oligonucleotides.	Comput. Biol. Medicine	2005	DBLP DOI BibTeX RDF
25	Olga V. Matveeva, Brian T. Foley, Vladimir A. Nemtsov, Raymond F. Gesteland, Senya Matsufuji, John F. Atkins, Aleksey Y. Ogurtsov, Svetlana A. Shabalina	Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome.	BMC Bioinform.	2004	DBLP DOI BibTeX RDF
25	Pål Sætrom	Predicting the efficacy of short oligonucleotides in antisense and RNAi experiments with boosted genetic programming.	Bioinform.	2004	DBLP DOI BibTeX RDF
25	Henrik Hornshøj, Henrik Stengaard, Frank Panitz, Christian Bendixen	SEPON, a Selection and Evaluation Pipeline for OligoNucleotides based on ESTs with a non-target Tm algorithm for reducing cross-hybridization in microarray gene expression experiments.	Bioinform.	2004	DBLP DOI BibTeX RDF
25	Sven Rahmann, Christine Gräfe	Mean and variance of the Gibbs free energy of oligonucleotides in the nearest neighbor model under varying conditions.	Bioinform.	2004	DBLP DOI BibTeX RDF
25	J. Zillies, C. Coester	A New Delivery System for Double Stranded siRNA Oligonucleotides Based on Gelatin Nanoparticles.	ICMENS	2004	DBLP DOI BibTeX RDF
25	Henrik Bjørn Nielsen, Rasmus Wernersson, Steen Knudsen	Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays.	Nucleic Acids Res.	2003	DBLP DOI BibTeX RDF
25	Liaofu Luo, Li-Ching Hsieh, Fengmin Ji, Mengwen Jia, H. C. Lee	Search for Evolution-Related-Oligonucleotides and Conservative Words in rRNA Sequences.	CSB	2003	DBLP DOI BibTeX RDF
25	Hao Chen 0007, Burt M. Sharp	Oliz, a suite of Perl scripts that assist in the design of microarrays using 50mer oligonucleotides from the 3' untranslated region.	BMC Bioinform.	2002	DBLP DOI BibTeX RDF
25	Kenji Onodera, Ulrich Melcher	VirOligo: a database of virus-specific oligonucleotides.	Nucleic Acids Res.	2002	DBLP DOI BibTeX RDF
25	Zhengdong Zhang, Richard C. Willson, George E. Fox	Identification of characteristic oligonucleotides in the bacterial 16S ribosomal RNA sequence dataset.	Bioinform.	2002	DBLP DOI BibTeX RDF
25	Lars Kaderali, Alexander Schliep	Selecting signature oligonucleotides to identify organisms using DNA arrays.	Bioinform.	2002	DBLP DOI BibTeX RDF
25	Rosel Kretschmer-Kazemi Far, Wolfgang Nedbal, Georg Sczakiel	Concepts to automate the theoretical design of effective antisense oligonucleotides.	Bioinform.	2001	DBLP DOI BibTeX RDF
25	Jeff Elhai	Determination of Bias in the Relative Abundance of Oligonucleotides in DNA Sequences.	J. Comput. Biol.	2001	DBLP DOI BibTeX RDF
25	Heikki Hyyrö, Mauno Vihinen, Martti Juhola	On Approximate String Matching of Unique Oligonucleotides.	MedInfo	2001	DBLP DOI BibTeX RDF
25	Heikki Hyyrö	On Using Two-Phase Filtering in Indexed Approximate String Matching with Application to Searching Unique Oligonucleotides.	SPIRE	2001	DBLP DOI BibTeX RDF
25	Alain Denise, Mireille Régnier, Mathias Vandenbogaert	Assessing the Statistical Significance of Overrepresented Oligonucleotides.	WABI	2001	DBLP DOI BibTeX RDF
25	Amy M. Diegelman, Eric T. Kool	Generation of circular RNAs and trans-cleaving catalytic RNAs by rolling transcription of circular DNA oligonucleotides encoding hairpin ribozymes.	Nucleic Acids Res.	1998	DBLP DOI BibTeX RDF
25	Irina Afonina, Maris Zivarts, Igor Kutyavin, Eugeny Lukhtanov, Howard Gamper, Rich B. Meyer	Efficient priming of PCR with short oligonucleotides conjugated to a minor groove binder.	Nucleic Acids Res.	1997	DBLP DOI BibTeX RDF
25	Chin-Yi Huang, Guixia Bi, Paul S. Miller	Triplex formation by oligonucleotides containing novel deoxycytidine derivatives [published erratum appears in Nucleic Acids Res 1997 Sep 15;25(18): following 3750].	Nucleic Acids Res.	1996	DBLP DOI BibTeX RDF
25	Alexander E. Kel, M. Philipenko, Vladimir N. Babenko, Nikolay A. Kolchanov	Genetic Algorithm for Selection of Oligonucleotides for Identification by Hybridisation of Genomic DNA Fragments Possessing Gene Potential.	German Conference on Bioinformatics	1996	DBLP BibTeX RDF
25	Frank Seela, Yaoming Chen	Oligonucleotides containing fluorescent 2'-deoxyisoinosine: solid-phase synthesis and duplex stability.	Nucleic Acids Res.	1995	DBLP DOI BibTeX RDF
25	Suzanne M. Cutts, Don R. Phillips	Use of oligonucleotides to define the site of interstrand cross-links induced by Adriamycin.	Nucleic Acids Res.	1995	DBLP DOI BibTeX RDF
25	Mahmoud Ghomi, Jean-Marc Victor, Charles Henriet	Monte Carlo Simulations on Short Single-Stranded Oligonucleotides. I. Application to RNA Trimers.	J. Comput. Chem.	1994	DBLP DOI BibTeX RDF
25	Osmar Norberto de Souza, Julia M. Goodfellow	Molecular dynamics simulations of oligonucleotides in solution: Visualisation of intrinsic curvature.	J. Comput. Aided Mol. Des.	1994	DBLP DOI BibTeX RDF
25	Marek Kwiatkowski, Martina Samiotaki, Urpo Lamminmäki, Veli-Matti Mukkala, Ulf Landegren	Solid-phase synthesis of chelate-labelled oligonucleotides: application in triple-color ligase-mediated gene analysis.	Nucleic Acids Res.	1994	DBLP DOI BibTeX RDF
25	Hui-Hsien Chou, James A. Reggia, Rafael Navarro-Gonzalez, Jayoung Wu	An Extended Cellular Space Method for Simulating Autocatalytic Oligonucleotides.	Comput. Chem.	1994	DBLP DOI BibTeX RDF
25	Paolo Romano 0001, Ottavia Aresu, Barbara Parodi, Maria Assunta Manniello, Maria Giuseppina Campi, Giovanna Angelini, Massimo Romani, Beatrice Iannotta, Gabriella Rondanina, Tiziana Ruzzon, Leonardo Santi	Molecular Probe Data Base: a database on synthetic oligonucleotides.	Nucleic Acids Res.	1993	DBLP DOI BibTeX RDF
25	Calum MacKellar, Duncan Graham, David W. Will, Stephen Burgess, Tom Brown	Synthesis and physical properties of anti-HIV antisense oligonucleotides bearing terminal lipophilic groups.	Nucleic Acids Res.	1992	DBLP DOI BibTeX RDF
25	Sergei M. Gryaznov, Robert L. Letsinger	Synthesis and properties of oligonucleotides containing aminodeoxythymidine units.	Nucleic Acids Res.	1992	DBLP DOI BibTeX RDF
25	Barry Milavetz	Preparation of nested deletions in single-strand DNA using oligonucleotides containing partially random base sequences.	Nucleic Acids Res.	1992	DBLP DOI BibTeX RDF
25	Andreas Ultsch, Christoph Maria Schuster, Heinrich Betz, William Wisden	In situ hybridization with oligonucleotides: a simplified method to detect Drosophila transcripts.	Nucleic Acids Res.	1991	DBLP DOI BibTeX RDF
25	A. David Adams, C. R. Petrie, Rich B. Meyer Jr.	Preparation and hybridization properties of oligonucleotides containing 1-alpha-D-arabinofuranosylthymine.	Nucleic Acids Res.	1991	DBLP DOI BibTeX RDF
25	D. Nizetic, R. Drmanac, Hans Lehrach	An improved bacterial colony lysis procedure enables direct DNA hybridisation using short (10, 11 bases) oligonucleotides to cosmids.	Nucleic Acids Res.	1991	DBLP DOI BibTeX RDF
25	Hitoshi Ueda, Susumu Hirose	Defining the sequence recognized with BmFTZ-F1, a sequence specific DNA binding factor in the silkworm, Bombyx mori, as revealed by direct sequencing of bound oligonucleotides and gel mobility shift competition analysis.	Nucleic Acids Res.	1991	DBLP DOI BibTeX RDF
25	K. Lucas, M. Busch, S. Mossinger, J. A. Thompson	An improved microcomputer program for finding gene- or gene family-specific oligonucleotides suitable as primers for polymerase chain reactions or as probes.	Comput. Appl. Biosci.	1991	DBLP DOI BibTeX RDF
25	Takeshi Sakata, Hidekazu Hiroaki, Yasushi Oda, Toshiki Tanaka, Morio Ikehara, Seiichi Uesugi	Studies on the structure and stabilizing factor of the CUUCGG hairpin RNA using chemically synthesized oligonucleotides.	Nucleic Acids Res.	1990	DBLP DOI BibTeX RDF
25	Prescilla E. Gonzaga, Linda Harris, Geoffrey P. Margison, Thomas P. Brent	Evidence that covalent complex formation between BCNU-treated oligonucleotides and E. coli alkyltransferases requires the O6- alkylguanine function.	Nucleic Acids Res.	1990	DBLP DOI BibTeX RDF
25	Stefano Volinia, Roberto Gambari, F. Bernardi, Italo Barrai	The frequency of oligonucleotides in mammalian genic regions.	Comput. Appl. Biosci.	1989	DBLP DOI BibTeX RDF
25	J. C. Edman, M. E. Evans-Holm, J. E. Marich, J. L. Ruth	Rapid DNA fingerprinting using alkaline phosphatase-conjugated oligonucleotides.	Nucleic Acids Res.	1988	DBLP DOI BibTeX RDF
25	Soumitra S. Ghosh, Gary F. Musso	Covalent attachment of oligonucleotides to solid supports.	Nucleic Acids Res.	1987	DBLP DOI BibTeX RDF
25	Andrzej K. Konopka, G. W. Smythers	DISTAN--a program which detects significant distances between short oligonucleotides.	Comput. Appl. Biosci.	1987	DBLP DOI BibTeX RDF
25	Ronald Frank, Wiebke Heikens, Gudrun Heisterberg-Moutsis, Helmut Blöcker	A new general approach for the simultaneous chemical synthesis of large numbers of oligonucleotides: segmental solid supports.	Nucleic Acids Res.	1983	DBLP DOI BibTeX RDF
25	V. L. Drutsa, V. F. Zarytova, D. G. Knorre, A. V. Lebedev, N. I. Sokolova, Z. A. Shabarova	Investigation of activation of phosphate groups in mono- and oligonucleotides with mesitoyl chloride.	Nucleic Acids Res.	1978	DBLP DOI BibTeX RDF
25	Amy K. Falvey, Gary B. Weiss, Leslie J. Krueger, Judith A. Kantor, W. French Anderson	Transcription of single base oligonucleotides by ribonucleic acid- directed deoxyribonucleic acid polymerase.	Nucleic Acids Res.	1976	DBLP DOI BibTeX RDF
17	M. Leigh Fanning, Joanne Macdonald, Darko Stefanovic	Advancing the Deoxyribozyme-Based Logic Gate Design Process.	DNA	2009	DBLP DOI BibTeX RDF
17	Lenwood S. Heath, Amrita Pati	Genomic Signatures in De Bruijn Chains.	WABI	2007	DBLP DOI BibTeX RDF
17	Ann-Ping Tsou, Yi-Ming Sun, Chia-Lin Liu, Hsien-Da Huang, Jorng-Tzong Horng, Meng-Feng Tsai, Baw-Jhiune Liu	Biological Data Warehousing System for Identifying Transcriptional Regulatory Sites From Gene Expressions of Microarray Data.	IEEE Trans. Inf. Technol. Biomed.	2006	DBLP DOI BibTeX RDF
17	Ulrich Bockelmann	Detecting DNA by field effect transistor arrays.	VLSI-SoC	2006	DBLP DOI BibTeX RDF
17	Kiranchand V. Bobba, Andrew Neel, Vinhthuy T. Phan, Max H. Garzon	"Reasoning" and "Talking" DNA: Can DNA Understand English?	DNA	2006	DBLP DOI BibTeX RDF	Semantic analysis and information retrieval, DNA chips and microarrays, sensitivy analysis, data classification and discrimination, question answering
17	Max H. Garzon, Vinhthuy T. Phan, Sujoy Roy, Andrew Neel	In Search of Optimal Codes for DNA Computing.	DNA	2006	DBLP DOI BibTeX RDF	Word design, encoding data on DNA, fault-tolerant DNA computing, maximal code sets, complex DNA self-assembly, shuffle codes, Gibbs energy
17	Zuwairie Ibrahim, Yusei Tsuboi, Osamu Ono, Marzuki Khalid	Hybrid Concentration-Controlled Direct-Proportional Length-Based DNA Computing for Numerical Optimization of the Shortest Path Problem.	BioADIT	2006	DBLP DOI BibTeX RDF
17	Doron Lipson, Yonatan Aumann, Amir Ben-Dor, Nathan Linial, Zohar Yakhini	Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis.	RECOMB	2005	DBLP DOI BibTeX RDF
17	Max H. Garzon, Vinhthuy T. Phan, Kiran C. Bobba, Raghuver Kontham	Sensitivity and Capacity of Microarray Encodings.	DNA	2005	DBLP DOI BibTeX RDF	h-distance, DNA chips, genomic analysis, classification and discrimination, data mining, fault-tolerant computing, microarrays, Data representation, Gibbs energy
17	Keiichiro Takahashi, Satsuki Yaegashi, Hiroyuki Asanuma, Masami Hagiya	Photo- and Thermoregulation of DNA Nanomachines.	DNA	2005	DBLP DOI BibTeX RDF
17	Shibin Qiu, Terran Lane	String Kernels of Imperfect Matches for Off-target Detection in RNA Interference.	International Conference on Computational Science (2)	2005	DBLP DOI BibTeX RDF
17	Zhijin Wu, Rafael A. Irizarry	Stochastic models inspired by hybridization theory for short oligonucleotide arrays.	RECOMB	2004	DBLP DOI BibTeX RDF	affymetrix probe-level data, background adjustment, stochastic models, microarrays, physical models
17	WeiPing Chen, Dongying Wu, Wei Zha, Paul Russell	Identification of Highly Significant Sequence Patterns in siRNAs for the Optimal Design of siRNA.	CBMS	2004	DBLP DOI BibTeX RDF
17	Vinhthuy T. Phan, Max H. Garzon	The Capacity of DNA for Information Encoding.	DNA	2004	DBLP DOI BibTeX RDF	Information storage capacity of DNA, h-distance, codeword design, shuffle codes, abiotic data on DNA chips, Gibbs energy
17	Hsiao Ping Lee, Tzu Fang Sheu, Yin-Te Tsai, Ching Hua Shih, Chuan Yi Tang	A Efficient Algorithm for Unique Signature Discovery on Whole-Genome EST Databases.	CSB	2004	DBLP DOI BibTeX RDF
17	Tadanori Mayumi	From the Pharmacokinetics to the Intracellular Dynamic Phase - Direct Introduction of Nanoparticles into Cytoplasm of Living Cells.	ICMENS	2004	DBLP DOI BibTeX RDF
17	Stanislav Angelov, Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim, Li-San Wang	Genome Identification and Classification by Short Oligo Arrays.	WABI	2004	DBLP DOI BibTeX RDF
17	Maryam S. Nuser, Russell J. Deaton	Simulations of DNA Computing with In Vitro Selection.	Genet. Program. Evolvable Mach.	2003	DBLP DOI BibTeX RDF	DNA word design, in vitro selection, simulation, DNA computing