Search results for "operons"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
121	Dongsheng Che, Guojun Li, Shane T. Jensen, Jun S. Liu, Ying Xu 0001	PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes.	ISBRA	2008	DBLP DOI BibTeX RDF
101	Shuqin Wang, Yan Wang 0028, Wei Du 0002, Fangxun Sun, Xiumei Wang, Yanchun Liang 0001, Chunguang Zhou	A Multi-gene-Feature-Based Genetic Algorithm for Prediction of Operon.	ICANNGA (1)	2007	DBLP DOI BibTeX RDF
81	PhuongAn Dam, Victor Olman, Ying Xu 0001	Improving Operon Prediction in E. coli.	CSB Workshops	2005	DBLP DOI BibTeX RDF
59	Shujiro Okuda, Toshiaki Katayama, Shuichi Kawashima, Susumu Goto, Minoru Kanehisa	ODB: a database of operons accumulating known operons across multiple genomes.	Nucleic Acids Res.	2006	DBLP DOI BibTeX RDF
56	Arvind K. Bansal, Christopher Woolverton	Applying Automatically Derived Gene-Groups to Automatically Predict and Refine Metabolic Pathways.	IEEE Trans. Knowl. Data Eng.	2003	DBLP DOI BibTeX RDF	enzymes, gene-groups, microbes, operons, orthologs, pathogenicity, Automation, homologs, drug-discovery, pathway, metabolic pathway, bacteria
40	Matheus B. S. Barros, Simone L. Martins, Alexandre Plastino 0001	Operon Prediction in Bacterial Genomes.	BSB	2008	DBLP DOI BibTeX RDF
40	Wei Du 0002, Yan Wang 0028, Shuqin Wang, Xiumei Wang, Fangxun Sun, Chen Zhang, Chunguang Zhou, Chengquan Hu, Yanchun Liang 0001	Operon Prediction Using Neural Network Based on Multiple Information of Log-Likelihoods.	ISNN (1)	2007	DBLP DOI BibTeX RDF
40	Natalia Khuri, Nikhila S. Rao	Operon Prediction in Cyanobacteria using Comparative Genomics.	CSB Workshops	2005	DBLP DOI BibTeX RDF
40	Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu 0001	Accurate Prediction of Orthologous Gene Groups in Microbes.	CSB	2005	DBLP DOI BibTeX RDF
40	Fenglou Mao, Zhengchang Su, Victor Olman, David Chuang, Ying Xu 0001	Pathway Mapping with Operon Information: An Integer-Programming Method.	CSB	2004	DBLP DOI BibTeX RDF
40	Takashi Gojobori, T. Daniel Andrews, Takeshi Itoh	Evolutionary features of genomes as disclosed by comparative analysis of complete genome sequences (abstract only).	RECOMB	2000	DBLP DOI BibTeX RDF
29	Bowen Yang, Minal Khatri, Jinfang Zheng, Jitender S. Deogun, Yanbin Yin	Genome mining for anti-CRISPR operons using machine learning.	Bioinform.	2023	DBLP DOI BibTeX RDF
29	Ahmad Al-Omari, James Griffith, Ashley Scruse, Robert W. Robinson, Heinz-Bernd Schüttler, Jonathan P. Arnold	Ensemble Methods for Identifying RNA Operons and Regulons in the Clock Network of Neurospora Crassa.	IEEE Access	2022	DBLP DOI BibTeX RDF
29	Marius A. Wenzel, Berndt Müller, Jonathan Pettitt	SLIDR and SLOPPR: flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data.	BMC Bioinform.	2021	DBLP DOI BibTeX RDF
29	Le Huang, Bowen Yang, Haidong Yi, Amina Asif, Jiawei Wang 0002, Trevor Lithgow, Han Zhang 0017, Fayyaz ul Amir Afsar Minhas, Yanbin Yin	AcrDB: a database of anti-CRISPR operons in prokaryotes and viruses.	Nucleic Acids Res.	2021	DBLP DOI BibTeX RDF
29	Haidong Yi, Le Huang, Bowen Yang, Javi Gomez, Han Zhang 0017, Yanbin Yin	AcrFinder: genome mining anti-CRISPR operons in prokaryotes and their viruses.	Nucleic Acids Res.	2020	DBLP DOI BibTeX RDF
29	Cedoljub Bundalovic-Torma, Gregory B. Whitfield, Lindsey S. Marmont, P. Lynne Howell, John Parkinson	A systematic pipeline for classifying bacterial operons reveals the evolutionary landscape of biofilm machineries.	PLoS Comput. Biol.	2020	DBLP DOI BibTeX RDF
29	Huy N. Nguyen, Ashish Jain, Oliver Eulenstein, Iddo Friedberg	Tracing the ancestry of operons in bacteria.	Bioinform.	2019	DBLP DOI BibTeX RDF
29	Xizeng Mao, Qin Ma 0003, Bingqiang Liu, Xin Chen, Hanyuan Zhang, Ying Xu 0001	Revisiting operons: an analysis of the landscape of transcriptional units in E. coli.	BMC Bioinform.	2015	DBLP DOI BibTeX RDF
29	Xizeng Mao, Qin Ma 0003, Chuan Zhou 0009, Xin Chen, Hanyuan Zhang, Jincai Yang, Fenglou Mao, Wei Lai, Ying Xu 0001	DOOR 2.0: presenting operons and their functions through dynamic and integrated views.	Nucleic Acids Res.	2014	DBLP DOI BibTeX RDF
29	Li-Yeh Chuang, Jui-Hung Tsai, Cheng-Hong Yang 0001	PPO: Predictor for Prokaryotic Operons.	Bioinform.	2010	DBLP DOI BibTeX RDF
29	Fenglou Mao, PhuongAn Dam, Jacky Chou, Victor Olman, Ying Xu 0001	DOOR: a database for prokaryotic operons.	Nucleic Acids Res.	2009	DBLP DOI BibTeX RDF
29	Mihaela Pertea, Kunmi Ayanbule, Megan Smedinghoff, Steven L. Salzberg	OperonDB: a comprehensive database of predicted operons in microbial genomes.	Nucleic Acids Res.	2009	DBLP DOI BibTeX RDF
29	Ilya Plyusnin, Liisa Holm, Matti Kankainen	LOCP - locating pilus operons in Gram-positive bacteria.	Bioinform.	2009	DBLP DOI BibTeX RDF
29	Morgan N. Price, Adam P. Arkin, Eric J. Alm	OpWise: Operons aid the identification of differentially expressed genes in bacterial microarray experiments.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
29	Sarita Ranjan, Ranjit Kumar Gundu, Akash Ranjan	MycoperonDB: a database of computationally identified operons and transcriptional units in Mycobacteria.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
29	Sailu Yellaboina, Jayashree Seshadri, M. Senthil Kumar, Akash Ranjan	PredictRegulon: a web server for the prediction of the regulatory protein binding sites and operons in prokaryote genomes.	Nucleic Acids Res.	2004	DBLP DOI BibTeX RDF
29	Anne-Sophie Carpentier, Alessandra Riva, Pierre Tisseur, Gilles Didier, Alain Hénaut	The operons, a criterion to compare the reliability of transcriptome analysis tools: ICA is more reliable than ANOVA, PLS and PCA.	Comput. Biol. Chem.	2004	DBLP DOI BibTeX RDF
29	Yuhong Wang, John P. Rose, Bi-Cheng Wang, Dawei Lin	Reconstruction of Ancient Operons From Complete Microbial Genome Sequences.	CSB	2003	DBLP DOI BibTeX RDF
29	Carlos Azevedo, Alexandre Plastino 0001, Ana Tereza Ribeiro de Vasconcelos	Procsimo: uma Ferramenta de Procura de Similaridade entre Operons.	WOB	2003	DBLP BibTeX RDF
29	Brian Tjaden, David R. Haynor, Sergey Stolyar, Carsten Rosenow, Eugene Kolker	Identifying operons and untranslated regions of transcripts using Escherichia coli RNA expression analysis.	ISMB	2002	DBLP BibTeX RDF
29	Gabriel Moreno-Hagelsieb, Julio Collado-Vides	A powerful non-homology method for the prediction of operons in prokaryotes.	ISMB	2002	DBLP BibTeX RDF
29	Günter Theißen, Jürgen Eberle, Martin Zacharias, Luise Tobias, Rolf Wagner	The tL structure within the leader region of Escherichia coli ribosomal RNA operons has post-transcriptional functions.	Nucleic Acids Res.	1990	DBLP DOI BibTeX RDF
29	R. Gafny, H. C. Hyman, S. Razin, G. Glaser	Promoters of Mycoplasma capricolum ribosomal RNA operons: identical activities but different regulation in homologous and heterologous cells.	Nucleic Acids Res.	1988	DBLP DOI BibTeX RDF
29	Steven R. Rodermel, P. Orlin, L. Bogorad	The transcription termination region between two convergently- transcribed photoregulated operons in the maize plastid chromosome contains rps14, trnR (UCU) and a putative trnfM pseudogene.	Nucleic Acids Res.	1987	DBLP DOI BibTeX RDF
20	Kazuhiro Ohkura, Toshiyuki Yasuda, Yuichi Kawamatsu, Yoshiyuki Matsumura, Kanji Ueda	MBEANN: Mutation-Based Evolving Artificial Neural Networks.	ECAL	2007	DBLP DOI BibTeX RDF
20	Jizhen Zhao, Dongsheng Che, Liming Cai	Comparative Pathway Prediction Via Unified Graph Modeling of Genomic Structure Information.	ISBRA	2007	DBLP DOI BibTeX RDF	Pathway prediction, protein-DNA interaction, operon, independent set, clique, tree decomposition
20	Juan Carlos Fernandez, Edgar E. Vallejo, Enrique Morett	Fuzzy C-means for inferring functional coupling of proteins from their phylogenetic profiles.	CIBCB	2006	DBLP DOI BibTeX RDF
20	Xiu-Feng Wan, Dong Xu	Intrinsic Terminator Prediction and Its Application in Synechococcus sp. WH8102.	J. Comput. Sci. Technol.	2005	DBLP DOI BibTeX RDF	rho-independent terminator, RNA local secondary structure, Synechococcus, Rnall, intrinsic terminator, transcription termination
20	Sun Kim, Jeong-Hyeon Choi, Jiong Yang	Gene Teams with Relaxed Proximity Constraint.	CSB	2005	DBLP DOI BibTeX RDF
20	Victor Olman, Hanchuan Peng, Zhengchang Su, Ying Xu 0001	Mapping of Microbial Pathways through Constrained Mapping of Orthologous Genes.	CSB	2004	DBLP DOI BibTeX RDF
20	Shoko Miyake, Yukako Tohsato, Yoichi Takenaka, Hideo Matsuda	Clustering Method for Comparative Analysis between Genomes and Pathways.	DASFAA	2003	DBLP DOI BibTeX RDF
20	Arvind K. Bansal, Peer Bork	Applying Logic Programming to Derive Novel Functional Information of Genomes.	PADL	1999	DBLP DOI BibTeX RDF