Search results for "orthologs"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
71	Adrian M. Altenhoff, Javier Garrayo-Ventas, Salvatore Cosentino, David Emms, Natasha M. Glover, Ana Hernández-Plaza, Yannis Nevers, Vicky Sundesha, Damian Szklarczyk, José María Fernández 0001, Laia Codó, The Quest for Orthologs Consortium, Josep Lluis Gelpí, Jaime Huerta-Cepas, Wataru Iwasaki 0001, Steven Kelly 0003, Odile Lecompte, Matthieu Muffato, Maria Jesus Martin, Salvador Capella-Gutiérrez, Paul D. Thomas, Erik L. L. Sonnhammer, Christophe Dessimoz	The Quest for Orthologs benchmark service and consensus calls in 2020.	Nucleic Acids Res.	2020	DBLP DOI BibTeX RDF
71	Kristoffer Forslund, Cécile Pereira, Salvador Capella-Gutiérrez, Alan W. Sousa da Silva, Adrian M. Altenhoff, Jaime Huerta-Cepas, Matthieu Muffato, Mateus Patricio, Klaas Vandepoele, Ingo Ebersberger, Judith A. Blake, Jesualdo Tomás Fernández-Breis, The Quest for Orthologs Consortium, Brigitte Boeckmann, Toni Gabaldón, Erik L. L. Sonnhammer, Christophe Dessimoz, Suzanna Lewis	Gearing up to handle the mosaic nature of life in the quest for orthologs.	Bioinform.	2018	DBLP DOI BibTeX RDF
71	Erik L. L. Sonnhammer, Toni Gabaldón, Alan W. Sousa da Silva, Maria Jesus Martin, Marc Robinson-Rechavi, Brigitte Boeckmann, Paul D. Thomas, Christophe Dessimoz, The Quest for Orthologs Consortium	Big data and other challenges in the quest for orthologs.	Bioinform.	2014	DBLP DOI BibTeX RDF
63	Rogier J. P. van Berlo, Lodewyk F. A. Wessels, S. D. C. Martes, Marcel J. T. Reinders	Identifying Orthologs: Cycle Splitting on the Breakpoint Graph.	CSB Workshops	2005	DBLP DOI BibTeX RDF
58	Tao Jiang 0001	A Combinatorial Approach to Genome-Wide Ortholog Assignment: Beyond Sequence Similarity Search.	CPM	2007	DBLP DOI BibTeX RDF
58	Xin Chen 0037, Jie Zheng 0002, Zheng Fu, Peng Nan, Yang Zhong, Stefano Lonardi, Tao Jiang 0001	Assignment of Orthologous Genes via Genome Rearrangement.	IEEE ACM Trans. Comput. Biol. Bioinform.	2005	DBLP DOI BibTeX RDF	Ortholog, paralog, reversal, comparative genomics, genome rearrangement, gene duplication
55	Arvind K. Bansal, Christopher Woolverton	Applying Automatically Derived Gene-Groups to Automatically Predict and Refine Metabolic Pathways.	IEEE Trans. Knowl. Data Eng.	2003	DBLP DOI BibTeX RDF	enzymes, gene-groups, microbes, operons, orthologs, pathogenicity, Automation, homologs, drug-discovery, pathway, metabolic pathway, bacteria
44	Kazuhiro Seki, Yoshihiro Kino, Kuniaki Uehara	Gene Functional Annotation with Dynamic Hierarchical Classification Guided by Orthologs.	Discovery Science	2009	DBLP DOI BibTeX RDF	Information retrieval, String matching, Gene ontology
44	Christophe Dessimoz, Gina Cannarozzi, Manuel Gil, Daniel Margadant, Alexander C. J. Roth, Adrian Schneider, Gaston H. Gonnet	OMA, A Comprehensive, Automated Project for the Identification of Orthologs from Complete Genome Data: Introduction and First Achievements.	Comparative Genomics	2005	DBLP DOI BibTeX RDF
38	Petra dos Santos Barros, Nina da Mota Soares-Cavalcanti, Gabriela S. Vieira-Mello, Ana Carolina Wanderley-Nogueira, Tercílio Calsa-Junior, Ana Maria Benko-Iseppon	In Silico Evaluation of Osmoprotectants in Eucalyptus Transcriptome.	CIBB	2008	DBLP DOI BibTeX RDF	Salinity and Drought Stress, Osmolytes, Crop Evolution, Data Mining
38	Deng Pan, Liqing Zhang 0002	A Holistic View of Evolutionary Rates in Paralogous and Orthologous Genes.	ICIC (2)	2008	DBLP DOI BibTeX RDF
38	Zheng Fu, Xin Chen 0037, Vladimir Vacic, Peng Nan, Yang Zhong, Tao Jiang 0001	A Parsimony Approach to Genome-Wide Ortholog Assignment.	RECOMB	2006	DBLP DOI BibTeX RDF
38	Zhenhua Guo, John W. Stiller	Comparative Genomics of Cyclin-Dependent Kinases Suggest Co-Evolution of the RNAP II C-Terminal Domain and CTD-Directed CDKs.	CSB	2004	DBLP DOI BibTeX RDF
38	Arvind K. Bansal, Peer Bork	Applying Logic Programming to Derive Novel Functional Information of Genomes.	PADL	1999	DBLP DOI BibTeX RDF
24	Dmitry Kuznetsov, Fredrik Tegenfeldt, Mosè Manni, Mathieu Seppey, Matthew Berkeley, Evgenia V. Kriventseva, Evgeny M. Zdobnov	OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
24	Jianwen Fang	Predicting thermostability difference between cellular protein orthologs.	Bioinform.	2023	DBLP DOI BibTeX RDF
24	Yannis Nevers, Tamsin E. M. Jones, Dushyanth Jyothi, Bethan Yates, Meritxell Ferret, Laura Portell-Silva, Laia Codó, Salvatore Cosentino, Marina Marcet-Houben, Anna Vlasova, Laetitia Poidevin, Arnaud Kress, Mark Hickman, Emma Persson, Ivana Pilizota, Cristina Guijarro-Clarke, Adrian M. Altenhoff, Elspeth A. Bruford, Christophe Dessimoz, Ingo Ebersberger, David M. Emms, Toni Gabaldón, Natasha M. Glover, Yanhui Hu, Wataru Iwasaki 0001, Odile Lecompte, Benjamin Linard, María J. Martín, David S. Roos, Erik Sonhammer, Paul D. Thomas, David Thybert, Klaas Vandepoele, Salvador Capella-Gutiérrez, Asier Gonzalez-Uriarte, Javier Garrayo-Ventas, Dmitry Repchevsky, Vicky Sundesha, Erik L. L. Sonnhammer	The Quest for Orthologs orthology benchmark service in 2022.	Nucleic Acids Res.	2022	DBLP DOI BibTeX RDF
24	Rafael Oliveira 0009, Saul de Castro Leite, Fernanda Nascimento Almeida	Phylogeny Trees as a Tool to Compare Inference Algorithms of Orthologs.	BSB	2022	DBLP DOI BibTeX RDF
24	Liang-Chin Huang, Rahil Taujale, Nathan Gravel, Aarya Venkat, Wayland Yeung, Dominic P. Byrne, Patrick A. Eyers, Natarajan Kannan	KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases.	BMC Bioinform.	2021	DBLP DOI BibTeX RDF
24	Evgeny M. Zdobnov, Dmitry Kuznetsov, Fredrik Tegenfeldt, Mosè Manni, Matthew Berkeley, Evgenia V. Kriventseva	OrthoDB in 2020: evolutionary and functional annotations of orthologs.	Nucleic Acids Res.	2021	DBLP DOI BibTeX RDF
24		Corrigendum to: HALPER facilitates the identification of regulatory element orthologs across species.	Bioinform.	2021	DBLP DOI BibTeX RDF
24	Kun Gao, Jonathan Miller 0002	Primary orthologs from local sequence context.	BMC Bioinform.	2020	DBLP DOI BibTeX RDF
24	Mariana Reyes-Prieto, Carlos Vargas-Chávez, Mercè Llabrés, Pere Palmer, Amparo Latorre, Andrés Moya	An update on the Symbiotic Genomes Database (SymGenDB): a collection of metadata, genomic, genetic and protein sequences, orthologs and metabolic networks of symbiotic organisms.	Database J. Biol. Databases Curation	2020	DBLP DOI BibTeX RDF
24	Xiaoyu Zhang, Irene M. Kaplow, Morgan Wirthlin, Tae Yoon Park, Andreas R. Pfenning	HALPER facilitates the identification of regulatory element orthologs across species.	Bioinform.	2020	DBLP DOI BibTeX RDF
24	Moses Stamboulian, Rafael F. Guerrero, Matthew W. Hahn, Predrag Radivojac	The ortholog conjecture revisited: the value of orthologs and paralogs in function prediction.	Bioinform.	2020	DBLP DOI BibTeX RDF
24	Yaoran Chen, Yuanyuan Zhu, Ming Zhong 0002, Rong Peng, Juan Liu 0007	GPPIAL: A New Global PPI Network Aligner Based on Orthologs.	BIBM	2020	DBLP DOI BibTeX RDF
24	Evgenia V. Kriventseva, Dmitry Kuznetsov, Fredrik Tegenfeldt, Mosè Manni, Renata Dias, Felipe A. Simão, Evgeny M. Zdobnov	OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs.	Nucleic Acids Res.	2019	DBLP DOI BibTeX RDF
24	Edgar Wingender, Torsten Schoeps, Martin Haubrock, Mathias Krull, Jürgen Dönitz	TFClass: expanding the classification of human transcription factors to their mammalian orthologs.	Nucleic Acids Res.	2018	DBLP DOI BibTeX RDF
24	Manuel Lafond, Mona Meghdari Miardan, David Sankoff	Accurate prediction of orthologs in the presence of divergence after duplication.	Bioinform.	2018	DBLP DOI BibTeX RDF
24	Corinne E. Sexton, Hayden Z. Smith, Peter D. Newell, Angela E. Douglas, John M. Chaston	MAGNAMWAR: an R package for genome-wide association studies of bacterial orthologs.	Bioinform.	2018	DBLP DOI BibTeX RDF
24	Guillaume Fertin, Falk Hüffner, Christian Komusiewicz, Manuel Sorge	Matching algorithms for assigning orthologs after genome duplication events.	Comput. Biol. Chem.	2018	DBLP DOI BibTeX RDF
24	Soheil Jahangiri-Tazehkand, Limsoon Wong, Changiz Eslahchi	OrthoGNC: A Software for Accurate Identification of Orthologs Based on Gene Neighborhood Conservation.	Genom. Proteom. Bioinform.	2017	DBLP DOI BibTeX RDF
24	Mateusz Kaduk, Christian Riegler, Oliver Lemp, Erik L. L. Sonnhammer	HieranoiDB: a database of orthologs inferred by Hieranoid.	Nucleic Acids Res.	2017	DBLP DOI BibTeX RDF
24	Evgeny M. Zdobnov, Fredrik Tegenfeldt, Dmitry Kuznetsov, Robert M. Waterhouse, Felipe A. Simão, Panagiotis Ioannidis 0001, Mathieu Seppey, Alexis Loetscher, Evgenia V. Kriventseva	OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs.	Nucleic Acids Res.	2017	DBLP DOI BibTeX RDF
24	Andrzej Zielezinski, Michal Dziubek, Jan Sliski, Wojciech M. Karlowski	ORCAN - a web-based meta-server for real-time detection and functional annotation of orthologs.	Bioinform.	2017	DBLP DOI BibTeX RDF
24	Yasuo Tabei, Yoshihiro Yamanishi, Masaaki Kotera	Simultaneous prediction of enzyme orthologs from chemical transformation patterns for de novo metabolic pathway reconstruction.	Bioinform.	2016	DBLP DOI BibTeX RDF
24	Marc Hellmuth, Nicolas Wieseke	Construction of Gene and Species Trees from Sequence Data incl. Orthologs, Paralogs, and Xenologs.	CoRR	2016	DBLP BibTeX RDF
24	Nadezda Kryuchkova-Mostacci, Marc Robinson-Rechavi	Tissue-Specificity of Gene Expression Diverges Slowly between Orthologs, and Rapidly between Paralogs.	PLoS Comput. Biol.	2016	DBLP DOI BibTeX RDF
24	Wenhua Lv, Jiajia Zheng, Meiwei Luan, Miao Shi, Hongjie Zhu, Mingming Zhang, Hongchao Lv, Zhenwei Shang, Lian Duan, Ruijie Zhang, Yongshuai Jiang	Comparing the evolutionary conservation between human essential genes, human orthologs of mouse essential genes and human housekeeping genes.	Briefings Bioinform.	2015	DBLP DOI BibTeX RDF
24	Edgar Wingender, Torsten Schoeps, Martin Haubrock, Jürgen Dönitz	TFClass: a classification of human transcription factors and their rodent orthologs.	Nucleic Acids Res.	2015	DBLP DOI BibTeX RDF
24	Evgenia V. Kriventseva, Fredrik Tegenfeldt, Tom J. Petty, Robert M. Waterhouse, Felipe A. Simão, Igor A. Pozdnyakov, Panagiotis Ioannidis 0001, Evgeny M. Zdobnov	OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software.	Nucleic Acids Res.	2015	DBLP DOI BibTeX RDF
24	Felipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis 0001, Evgenia V. Kriventseva, Evgeny M. Zdobnov	BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.	Bioinform.	2015	DBLP DOI BibTeX RDF
24	Jialu Hu	Algorithms to Identify Functional Orthologs And Functional Modules from High- Throughput Data (Algorithmen zur Identifizierung von Funktions-Orthologen und Funktionsmodulen von Hochdurchsatz-Daten)		2015	RDF
24	Ines Wagner, Michael Volkmer, Malvika Sharan, Jose M. Villaveces, Felix Oswald, Vineeth Surendranath, Bianca Habermann	morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
24	Robert M. Waterhouse, Fredrik Tegenfeldt, Jia Li, Evgeny M. Zdobnov, Evgenia V. Kriventseva	OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs.	Nucleic Acids Res.	2013	DBLP DOI BibTeX RDF
24	Nives Skunca, Matko Bosnjak, Anita Krisko, Pance Panov, Saso Dzeroski, Tomislav Smuc, Fran Supek	Phyletic Profiling with Cliques of Orthologs Is Enhanced by Signatures of Paralogy Relationships.	PLoS Comput. Biol.	2013	DBLP DOI BibTeX RDF
24	Arno Meiler, Claudia Klinger, Michael Kaufmann 0002	ANCAC: amino acid, nucleotide, and codon analysis of COGs - a tool for sequence bias analysis in microbial orthologs.	BMC Bioinform.	2012	DBLP DOI BibTeX RDF
24	Christophe Dessimoz, Toni Gabaldón, David S. Roos, Erik L. L. Sonnhammer, Javier Herrero	Toward community standards in the quest for orthologs.	Bioinform.	2012	DBLP DOI BibTeX RDF
24	Paul D. Thomas, Valerie Wood, Christopher J. Mungall, Suzanna E. Lewis, Judith A. Blake	On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report.	PLoS Comput. Biol.	2012	DBLP DOI BibTeX RDF
24	Adrian M. Altenhoff, Romain A. Studer, Marc Robinson-Rechavi, Christophe Dessimoz	Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs.	PLoS Comput. Biol.	2012	DBLP DOI BibTeX RDF
24	Jeong Eun Min, Matthew D. Whiteside, Fiona S. L. Brinkman, Brad McNeney, Jinko Graham	A statistical approach to high-throughput screening of predicted orthologs.	Comput. Stat. Data Anal.	2011	DBLP DOI BibTeX RDF
24	Marcus Lechner, Sven Findeiß, Lydia Steiner, Manja Marz, Peter F. Stadler, Sonja J. Prohaska	Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
24	Kristoffer Forslund, Isabella Pekkari, Erik L. L. Sonnhammer	Domain architecture conservation in orthologs.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
24	Walid H. Gharib, Marc Robinson-Rechavi	When orthologs diverge between human and mouse.	Briefings Bioinform.	2011	DBLP DOI BibTeX RDF
24	Kristoffer Forslund, Fabian Schreiber, Nattaphon Thanintorn, Erik L. L. Sonnhammer	OrthoDisease: tracking disease gene orthologs across 100 species.	Briefings Bioinform.	2011	DBLP DOI BibTeX RDF
24	Robert M. Waterhouse, Evgeny M. Zdobnov, Fredrik Tegenfeldt, Jia Li, Evgenia V. Kriventseva	OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011.	Nucleic Acids Res.	2011	DBLP DOI BibTeX RDF
24	Yanqi Hao, Anna Merkoulovitch, James Vlasblom, Shuye Pu, Andrei L. Turinsky, Denitza Roudeva, Brian Turner, Jack Greenblatt, Shoshana J. Wodak	OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms.	Bioinform.	2011	DBLP DOI BibTeX RDF
24	Kangseok Kim, Wonil Kim, Sunshin Kim	ReMark: an automatic program for clustering orthologs flexibly combining a Recursive and a Markov clustering algorithms.	Bioinform.	2011	DBLP DOI BibTeX RDF
24	Jike Cui, Todd F. DeLuca, Jae-Yoon Jung, Dennis P. Wall	Detecting biological network organization and functional gene orthologs.	Bioinform.	2011	DBLP DOI BibTeX RDF
24	Christopher J. Creevey, Jean Muller, Tobias Doerks, Julie Dawn Thompson, Detlev Arendt, Peer Bork	Identifying Single Copy Orthologs in Metazoa.	PLoS Comput. Biol.	2011	DBLP DOI BibTeX RDF
24	José Antonio Miñarro-Giménez, Mikel Egaña Aranguren, Rodrigo Martínez-Béjar, Jesualdo Tomás Fernández-Breis, Marisa Madrid	Semantic integration of information about orthologs and diseases: The OGO system.	J. Biomed. Informatics	2011	DBLP DOI BibTeX RDF
24	David Sankoff	OMG! Orthologs for Multiple Genomes - Competing Formulations - (Keynote Talk).	ISBRA	2011	DBLP DOI BibTeX RDF
24	Chunfang Zheng, Krister M. Swenson, Eric Lyons 0002, David Sankoff	OMG! Orthologs in Multiple Genomes - Competing Graph-Theoretical Formulations.	WABI	2011	DBLP DOI BibTeX RDF
24	Huaiyu Mi, Qing Dong, Anushya Muruganujan, Pascale Gaudet, Suzanna Lewis, Paul D. Thomas	PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium.	Nucleic Acids Res.	2010	DBLP DOI BibTeX RDF
24	Khalid Mahmood 0001, Arun Siddharth Konagurthu, Jiangning Song, Ashley M. Buckle, Geoffrey I. Webb, James C. Whisstock	EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes.	Bioinform.	2010	DBLP DOI BibTeX RDF
24	Adrian M. Altenhoff, Christophe Dessimoz	Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods.	PLoS Comput. Biol.	2009	DBLP DOI BibTeX RDF
24	Oliver Keller, Florian Odronitz, Mario Stanke, Martin Kollmar, Stephan Waack	Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
24	Evgenia V. Kriventseva, Nazim Rahman, Octavio Espinosa, Evgeni M. Zdobnov	OrthoDB: the hierarchical catalog of eukaryotic orthologs.	Nucleic Acids Res.	2008	DBLP DOI BibTeX RDF
24	Gabriel Moreno-Hagelsieb, Kristen Latimer	Choosing BLAST options for better detection of orthologs as reciprocal best hits.	Bioinform.	2008	DBLP DOI BibTeX RDF
24	Zheng Fu, Tao Jiang 0001	Clustering of Main orthologs for Multiple genomes.	J. Bioinform. Comput. Biol.	2008	DBLP DOI BibTeX RDF
24	Alexander E. Ivliev, Marina G. Sergeeva	Orthofocus: Program for Identification of orthologs in Multiple genomes in Family-Focused Studies.	J. Bioinform. Comput. Biol.	2008	DBLP DOI BibTeX RDF
24	Jens Lichtenberg, Paul Morris, Klaus Ecker, Lonnie R. Welch	Discovery of Regulatory Elements in Oomycete Orthologs.	BIOCOMP	2008	DBLP BibTeX RDF
24	Nir Yosef, Roded Sharan, William Stafford Noble	Improved network-based identification of protein orthologs.	ECCB	2008	DBLP DOI BibTeX RDF
24	Anil G. Jegga, Jing Chen 0021, Sivakumar Gowrisankar, Mrunal A. Deshmukh, Ranga Chandra Gudivada, Sue Kong, Vivek Kaimal, Bruce J. Aronow	GenomeTrafac: a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs.	Nucleic Acids Res.	2007	DBLP DOI BibTeX RDF
24	Christopher J. Penkett, James A. Morris, Valerie Wood, Jürg Bähler	YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms.	Nucleic Acids Res.	2006	DBLP DOI BibTeX RDF
24	Todd F. DeLuca, I-Hsien Wu, Jian Pu, Thomas Monaghan, Leonid Peshkin, Saurav Singh, Dennis P. Wall	Roundup: a multi-genome repository of orthologs and evolutionary distances.	Bioinform.	2006	DBLP DOI BibTeX RDF
24	Andrey Alexeyenko, Ivica Tamas, Gang Liu, Erik L. L. Sonnhammer	Automatic clustering of orthologs and inparalogs shared by multiple proteomes.	ISMB (Supplement of Bioinformatics)	2006	DBLP DOI BibTeX RDF
24	Kevin P. O'Brien, Maido Remm, Erik L. L. Sonnhammer	Inparanoid: a comprehensive database of eukaryotic orthologs.	Nucleic Acids Res.	2005	DBLP DOI BibTeX RDF
24	Jean-François Dufayard, Laurent Duret, Simon Penel, Manolo Gouy, François Rechenmann, Guy Perrière	Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.	Bioinform.	2005	DBLP DOI BibTeX RDF
24	Hatice Gulcin Ozer, Jingchun Chen, Fa Zhang 0001, Bo Yuan	Clustering of eukaryotic orthologs based on sequence and Domain Similarities using the Markov Graph-Flow Algorithm.	Advances in Bioinformatics and Its Applications	2005	DBLP DOI BibTeX RDF
24	Steven B. Cannon, Nevin D. Young	OrthoParaMap: Distinguishing orthologs from paralogs by integrating comparative genome data and gene phylogenies.	BMC Bioinform.	2003	DBLP DOI BibTeX RDF
24	Dennis P. Wall, H. B. Fraser, A. E. Hirsh	Detecting putative orthologs.	Bioinform.	2003	DBLP DOI BibTeX RDF
24	Christian M. Zmasek, Sean R. Eddy	RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs.	BMC Bioinform.	2002	DBLP DOI BibTeX RDF
24	Yan P. Yuan, Oliver Eulenstein, Martin Vingron, Peer Bork	Towards detection of sequence orthologs.	German Conference on Bioinformatics	1997	DBLP BibTeX RDF
19	Chih-Hao Hsu, Yu Zhang 0002, Ross C. Hardison, Webb Miller	Whole-Genome Analysis of Gene Conversion Events.	RECOMB-CG	2009	DBLP DOI BibTeX RDF
19	Valeria Fionda, Luigi Palopoli 0001, Simona Panni, Simona E. Rombo	Extracting similar sub-graphs across PPI networks.	ISCIS	2009	DBLP DOI BibTeX RDF
19	Corban G. Rivera, T. M. Murali 0001	Identifying Evolutionarily Conserved Protein Interaction Modules Using GraphHopper.	BICoB	2009	DBLP DOI BibTeX RDF
19	Chunfang Zheng, Qian Zhu 0002, David Sankoff	Parts of the Problem of Polyploids in Rearrangement Phylogeny.	RECOMB-CG	2007	DBLP DOI BibTeX RDF
19	Rohit Singh 0001, Jinbo Xu, Bonnie Berger	Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology.	RECOMB	2007	DBLP DOI BibTeX RDF
19	Todd J. Taylor, Iosif I. Vaisman	Discrimination and Classification of Thermophilic and Mesophilic Proteins.	ISVD	2007	DBLP DOI BibTeX RDF
19	Akshay Vashist, Casimir A. Kulikowski, Ilya B. Muchnik	Protein Function Annotation Based on Ortholog Clusters Extracted from Incomplete Genomes Using Combinatorial Optimization.	RECOMB	2006	DBLP DOI BibTeX RDF
19	Krister M. Swenson, Nicholas D. Pattengale, Bernard M. E. Moret	A Framework for Orthology Assignment from Gene Rearrangement Data.	Comparative Genomics	2005	DBLP DOI BibTeX RDF
19	Mehmet M. Dalkilic, Arijit Sengupta	Design and evaluation of CATPA: curation and alignment tool for protein analysis.	SAC	2005	DBLP DOI BibTeX RDF	genomic information retrieval, bioinformatics, alignment, genomics, database modeling
19	Andreas Krämer, Daniel R. Richards, James O. Bowlby, Ramon M. Felciano	Functional Modularity in a Large-Scale Mammalian Molecular Interaction Network.	CSB Workshops	2005	DBLP DOI BibTeX RDF
19	Hong Liu, Li Li, Asher Zilberstein, Chang S. Hahn	Segmental Duplications Containing Tandem Repeated Genes Encoding Putative Deubiquitinating Enzymes.	CSB	2004	DBLP DOI BibTeX RDF	segmental duplication, deubiquitinating enzyme
19	Ming Ouyang, John Case, Joan Burnside	Divide and Conquer Machine Learning for a Genomics Analogy Problem (Progress Report).	Discovery Science	2001	DBLP DOI BibTeX RDF