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GrowBag graphs for keyword ? (Num. hits/coverage)
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Results
Found 113 publication records. Showing 113 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
104 | Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad |
Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution. ![Search on Bibsonomy](Pics/bibsonomy.png) |
RECOMB ![In: Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004, San Diego, California, USA, March 27-31, 2004, pp. 326-335, 2004, ACM, 1-58113-755-9. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
gene tree, orthology, algorithms, bayesian analysis, reconciliation |
45 | Pavol Jancura, Jaap Heringa, Elena Marchiori |
Dividing Protein Interaction Networks by Growing Orthologous Articulations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PRIB ![In: Pattern Recognition in Bioinformatics, Third IAPR International Conference, PRIB 2008, Melbourne, Australia, October 15-17, 2008. Proceedings, pp. 187-200, 2008, Springer, 978-3-540-88434-7. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
Protein network dividing, modular network alignment |
23 | Jing Chen, Haoyu Wu, Ning Wang |
KEGG orthology prediction of bacterial proteins using natural language processing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 25(1), pp. 146, December 2024. The full citation details ...](Pics/full.jpeg) |
2024 |
DBLP DOI BibTeX RDF |
|
23 | Youngjune Park, Nils P. Muttray, Anne-Christin Hauschild |
Species-agnostic transfer learning for cross-species transcriptomics data integration without gene orthology. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 25(2), January 2024. The full citation details ...](Pics/full.jpeg) |
2024 |
DBLP DOI BibTeX RDF |
|
23 | Wend Yam Donald Davy Ouedraogo, Aïda Ouangraoua |
Orthology and Paralogy Relationships at Transcript Level. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Biol. ![In: J. Comput. Biol. 31(4), pp. 277-293, 2024. The full citation details ...](Pics/full.jpeg) |
2024 |
DBLP DOI BibTeX RDF |
|
23 | Diego P. Rubert, Marília D. V. Braga |
Efficient gene orthology inference via large-scale rearrangements. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Algorithms Mol. Biol. ![In: Algorithms Mol. Biol. 18(1), pp. 14, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
23 | David Schaller 0001, Tom Hartmann, Manuel Lafond, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth |
Relative timing information and orthology in evolutionary scenarios. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Algorithms Mol. Biol. ![In: Algorithms Mol. Biol. 18(1), pp. 16, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
23 | Mustafa Siddiqui, Gavin C. Conant |
POInTbrowse: orthology prediction and synteny exploration for paleopolyploid genomes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 24(1), pp. 174, December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
23 | Tarcisio Mendes de Farias, Tatsuya Kushida, Ana Claudia Sima, Christophe Dessimoz, Hirokazu Chiba, Frédéric B. Bastian, Hiroshi Masuya |
Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource and disease datasets. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SWAT4HCLS ![In: 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), Basel, Switzerland, February 13-16, 2023., pp. 177-178, 2023, CEUR-WS.org. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP BibTeX RDF |
|
23 | Yannis Nevers, Tamsin E. M. Jones, Dushyanth Jyothi, Bethan Yates, Meritxell Ferret, Laura Portell-Silva, Laia Codó, Salvatore Cosentino, Marina Marcet-Houben, Anna Vlasova, Laetitia Poidevin, Arnaud Kress, Mark Hickman, Emma Persson, Ivana Pilizota, Cristina Guijarro-Clarke, Adrian M. Altenhoff, Elspeth A. Bruford, Christophe Dessimoz, Ingo Ebersberger, David M. Emms, Toni Gabaldón, Natasha M. Glover, Yanhui Hu, Wataru Iwasaki 0001, Odile Lecompte, Benjamin Linard, María J. Martín, David S. Roos, Erik Sonhammer, Paul D. Thomas, David Thybert, Klaas Vandepoele, Salvador Capella-Gutiérrez, Asier Gonzalez-Uriarte, Javier Garrayo-Ventas, Dmitry Repchevsky, Vicky Sundesha, Erik L. L. Sonnhammer |
The Quest for Orthologs orthology benchmark service in 2022. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 50(W1), pp. 623-632, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
23 | Alina Nicheperovich, Adrian M. Altenhoff, Christophe Dessimoz, Sina Majidian |
OMAMO: orthology-based alternative model organism selection. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(10), pp. 2965-2966, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
23 | Emma Persson, Erik L. L. Sonnhammer |
InParanoid-DIAMOND: faster orthology analysis with the InParanoid algorithm. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(10), pp. 2918-2919, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
23 | David Schaller 0001, Tom Hartmann, Manuel Lafond, Nicolas Wieseke, Marc Hellmuth, Peter F. Stadler |
Relative Timing Information and Orthology in Evolutionary Scenarios. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2212.02201, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
23 | Diego P. Rubert, Marília D. V. Braga |
Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: 22nd International Workshop on Algorithms in Bioinformatics, WABI 2022, September 5-7, 2022, Potsdam, Germany., pp. 24:1-24:22, 2022, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 978-3-95977-243-3. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
23 | Eva S. Deutekom, Berend Snel, Teunis J. P. van Dam |
Benchmarking orthology methods using phylogenetic patterns defined at the base of Eukaryotes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 22(3), 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
23 | Bethan Yates, Kristian A. Gray, Tamsin E. M. Jones, Elspeth A. Bruford |
Updates to HCOP: the HGNC comparison of orthology predictions tool. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 22(6), 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
23 | Saoirse Foley, Carolyn Ku, Brad Arshinoff, Vaneet Lotay, Kamran Karimi, Peter D. Vize, Veronica F. Hinman |
Integration of 1: 1 orthology maps and updated datasets into Echinobase. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Database J. Biol. Databases Curation ![In: Database J. Biol. Databases Curation 2021, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
23 | Adrian M. Altenhoff, Clément-Marie Train, Kimberly J. Gilbert, Ishita Mediratta, Tarcisio Mendes de Farias, David Moi, Yannis Nevers, Hale-Seda Radoykova, Victor Rossier, Alex Warwick Vesztrocy, Natasha M. Glover, Christophe Dessimoz |
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 49(Database-Issue), pp. D373-D379, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
23 | Georgios N. Dimitrakopoulos, Maria I. Klapa, Nicholas K. Moschonas |
PICKLE 3.0: enriching the human meta-database with the mouse protein interactome extended via mouse-human orthology. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(1), pp. 145-146, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
23 | Marc Hellmuth, Mira Michel, Nikolai N. Nøjgaard, David Schaller 0001, Peter F. Stadler |
Combining Orthology and Xenology Data in a Common Phylogenetic Tree. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2107.01893, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP BibTeX RDF |
|
23 | Anjan Kumar Payra, Banani Saha, Anupam Ghosh |
Ortho_Sim_Loc: Essential protein prediction using orthology and priority-based similarity approach. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Comput. Biol. Chem. ![In: Comput. Biol. Chem. 92, pp. 107503, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
23 | Alitzel López Sánchez, Manuel Lafond |
Colorful orthology clustering in bounded-degree similarity graphs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Bioinform. Comput. Biol. ![In: J. Bioinform. Comput. Biol. 19(6), pp. 2140010:1-2140010:15, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
23 | Diego P. Rubert, Daniel Doerr, Marília D. V. Braga |
The potential of family-free rearrangements towards gene orthology inference. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Bioinform. Comput. Biol. ![In: J. Bioinform. Comput. Biol. 19(6), pp. 2140014:1-2140014:15, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
23 | Marc Hellmuth, Mira Michel, Nikolai N. Nøjgaard, David Schaller 0001, Peter F. Stadler |
Combining Orthology and Xenology Data in a Common Phylogenetic Tree. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BSB ![In: Advances in Bioinformatics and Computational Biology - 14th Brazilian Symposium on Bioinformatics, BSB 2021, Virtual Event, November 22-26, 2021, Proceedings, pp. 53-64, 2021, Springer, 978-3-030-91813-2. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
23 | Gaoshi Li, Min Li 0007, Jianxin Wang 0001, Yaohang Li, Yi Pan 0001 |
United Neighborhood Closeness Centrality and Orthology for Predicting Essential Proteins. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE ACM Trans. Comput. Biol. Bioinform. ![In: IEEE ACM Trans. Comput. Biol. Bioinform. 17(4), pp. 1451-1458, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
|
23 | Uciel Chorostecki, Manuel Molina, Leszek P. Pryszcz, Toni Gabaldón |
MetaPhOrs 2.0: integrative, phylogeny-based inference of orthology and paralogy across the tree of life. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 48(Webserver-Issue), pp. W553-W557, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
|
23 | David Schaller 0001, Manuela Geiß, Peter F. Stadler, Marc Hellmuth |
Complete Characterization of Incorrect Orthology Assignments in Best Match Graphs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2006.02249, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP BibTeX RDF |
|
23 | Safa Jammali, Jean-David Aguilar, Esaie Kuitche, Aïda Ouangraoua |
SplicedFamAlign: CDS-to-gene spliced alignment and identification of transcript orthology groups. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 20-S(3), pp. 37-52, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
|
23 | Emma Persson, Mateusz Kaduk, Sofia K. Forslund, Erik L. L. Sonnhammer |
Domainoid: domain-oriented orthology inference. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 20(1), pp. 523:1-523:12, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
|
23 | Ikuo Uchiyama, Motohiro Mihara, Hiroyo Nishide, Hirokazu Chiba, Masaki Kato |
MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 47(Database-Issue), pp. D382-D389, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
|
23 | Jaime Huerta-Cepas, Damian Szklarczyk, Davide Heller, Ana Hernández-Plaza, Sofia K. Forslund, Helen Cook, Daniel R. Mende, Ivica Letunic, Thomas Rattei, Lars Juhl Jensen, Christian von Mering, Peer Bork |
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 47(Database-Issue), pp. D309-D314, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
|
23 | Salvatore Cosentino, Wataru Iwasaki 0001 |
SonicParanoid: fast, accurate and easy orthology inference. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 35(1), pp. 149-151, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
|
23 | Manuela Geiß |
From Best Match Graphs to Gene Trees: A new perspective on graph-based orthology inference ![Search on Bibsonomy](Pics/bibsonomy.png) |
|
2019 |
RDF |
|
23 | Katharina T. Huber, Guillaume E. Scholz |
Beyond Representing Orthology Relations by Trees. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Algorithmica ![In: Algorithmica 80(1), pp. 73-103, 2018. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
|
23 | Adrian M. Altenhoff, Natasha M. Glover, Clément-Marie Train, Klara Kaleb, Alex Warwick Vesztrocy, David Dylus, Tarcisio M. Farias, Karina Zile, Charles Stevenson, Jiao Long, Henning Redestig, Gaston H. Gonnet, Christophe Dessimoz |
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 46(Database-Issue), pp. D477-D485, 2018. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
|
23 | Riccardo Dondi, Manuel Lafond, Nadia El-Mabrouk |
Approximating the correction of weighted and unweighted orthology and paralogy relations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Algorithms Mol. Biol. ![In: Algorithms Mol. Biol. 12(1), pp. 4:1-4:15, 2017. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
23 | Kai Battenberg, Ernest K. Lee, Joanna C. Chiu, Alison M. Berry, Daniel Potter |
OrthoReD: a rapid and accurate orthology prediction tool with low computational requirement. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 18(1), pp. 310, 2017. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
23 | Mateusz Kaduk, Erik L. L. Sonnhammer |
Improved orthology inference with Hieranoid 2. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 33(8), pp. 1154-1159, 2017. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
23 | Mark Jones 0001, Manuel Lafond, Céline Scornavacca |
Consistency of orthology and paralogy constraints in the presence of gene transfers. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/1705.01240, 2017. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP BibTeX RDF |
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23 | Nikolai Nøjgaard, Nadia El-Mabrouk, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth |
Partial Orthology, Paralogy and Xenology Relations - Satisfiability in terms of Di-Cographs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/1711.00504, 2017. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP BibTeX RDF |
|
23 | Christine Kehyayan, Gregory Butler |
SynAPhy and SynAVal: Mining a Synteny-Similarity Graph to Resolve Orthology of Proteins in Fungal Genomes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBE ![In: 17th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2017, Washington, DC, USA, October 23-25, 2017, pp. 346-351, 2017, IEEE Computer Society, 978-1-5386-1324-5. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
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23 | Tarcisio M. Farias, Hirokazu Chiba, Jesualdo Tomás Fernández-Breis |
Leveraging Logical Rules for Efficacious Representation of Large Orthology Datasets. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SWAT4LS ![In: Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), Rome, Italy, December 4-7, 2017., 2017, CEUR-WS.org. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP BibTeX RDF |
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23 | Riccardo Dondi, Giancarlo Mauri, Italo Zoppis |
Orthology Correction for Gene Tree Reconstruction: Theoretical and Experimental Results. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICCS ![In: International Conference on Computational Science, ICCS 2017, 12-14 June 2017, Zurich, Switzerland, pp. 1115-1124, 2017, Elsevier. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
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23 | Jesualdo Tomás Fernández-Breis, Hirokazu Chiba, María Del Carmen Legaz-García, Ikuo Uchiyama |
The Orthology Ontology: development and applications. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Biomed. Semant. ![In: J. Biomed. Semant. 7, pp. 34, 2016. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
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23 | Manuel Lafond, Riccardo Dondi, Nadia El-Mabrouk |
The link between orthology relations and gene trees: a correction perspective. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Algorithms Mol. Biol. ![In: Algorithms Mol. Biol. 11, pp. 4, 2016. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
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23 | Gaoshi Li, Min Li 0007, Jianxin Wang 0001, Jingli Wu, Fang-Xiang Wu, Yi Pan 0001 |
Predicting essential proteins based on subcellular localization, orthology and PPI networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 17(S-8), pp. 279, 2016. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
|
23 | Mark Jones, Christophe Paul, Céline Scornavacca |
On the consistency of orthology relationships. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 17(S-14), pp. 251-262, 2016. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
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23 | Jaime Huerta-Cepas, Damian Szklarczyk, Kristoffer Forslund, Helen Cook, Davide Heller, Mathias C. Walter, Thomas Rattei, Daniel R. Mende, Shinichi Sunagawa, Michael Kuhn 0004, Lars Juhl Jensen, Christian von Mering, Peer Bork |
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 44(Database-Issue), pp. 286-293, 2016. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
|
23 | Katharina T. Huber, Guillaume E. Scholz |
Beyond representing orthology relations by trees. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/1603.04632, 2016. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP BibTeX RDF |
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23 | Riccardo Dondi, Nadia El-Mabrouk, Manuel Lafond |
Correction of Weighted Orthology and Paralogy Relations - Complexity and Algorithmic Results. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: Algorithms in Bioinformatics - 16th International Workshop, WABI 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings, pp. 121-136, 2016, Springer, 978-3-319-43680-7. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
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23 | Tristan Bitard-Feildel, Carsten Kemena, Jenny M. Greenwood, Erich Bornberg-Bauer |
Domain similarity based orthology detection. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 16, pp. 154:1-154:11, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
23 | Erik L. L. Sonnhammer, Gabriel Östlund |
InParanoid 8: orthology analysis between 273 proteomes, mostly eukaryotic. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 43(Database-Issue), pp. 234-239, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
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23 | Adrian M. Altenhoff, Nives Skunca, Natasha M. Glover, Clément-Marie Train, Anna Sueki, Ivana Pilizota, Kevin Gori, Bartlomiej Tomiczek, Steven Müller, Henning Redestig, Gaston H. Gonnet, Christophe Dessimoz |
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 43(Database-Issue), pp. 240-249, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
23 | Jesualdo Tomás Fernández-Breis, María Del Carmen Legaz-García, Hirokazu Chiba, Ikuo Uchiyama |
Towards the Semantic Standardization of Orthology Content. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SWAT4LS ![In: Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, Cambridge UK, December 7-10, 2015., pp. 74-83, 2015, CEUR-WS.org. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP BibTeX RDF |
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23 | Manuel Lafond, Nadia El-Mabrouk |
Orthology Relation and Gene Tree Correction: Complexity Results. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: Algorithms in Bioinformatics - 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings, pp. 66-79, 2015, Springer, 978-3-662-48220-9. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
23 | Ikram Ullah 0004 |
Probabilistic Models for Species Tree Inference and Orthology Analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
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2015 |
RDF |
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23 | Mary Qu Yang, Laura Elnitski |
Orthology-driven mapping of bidirectional promoters in human and mouse genomes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 15(S-17), pp. S1, 2014. The full citation details ...](Pics/full.jpeg) |
2014 |
DBLP DOI BibTeX RDF |
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23 | Ines Wagner, Michael Volkmer, Malvika Sharan, Jose M. Villaveces, Felix Oswald, Vineeth Surendranath, Bianca Habermann |
morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 15, pp. 263, 2014. The full citation details ...](Pics/full.jpeg) |
2014 |
DBLP DOI BibTeX RDF |
|
23 | Fabian Schreiber, Mateus Patricio, Matthieu Muffato, Miguel Pignatelli, Alex Bateman |
TreeFam v9: a new website, more species and orthology-on-the-fly. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 42(Database-Issue), pp. 922-925, 2014. The full citation details ...](Pics/full.jpeg) |
2014 |
DBLP DOI BibTeX RDF |
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23 | Sean Powell, Kristoffer Forslund, Damian Szklarczyk, Kalliopi Trachana, Alexander Roth 0001, Jaime Huerta-Cepas, Toni Gabaldón, Thomas Rattei, Christopher J. Creevey, Michael Kuhn 0004, Lars Juhl Jensen, Christian von Mering, Peer Bork |
eggNOG v4.0: nested orthology inference across 3686 organisms. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 42(Database-Issue), pp. 231-239, 2014. The full citation details ...](Pics/full.jpeg) |
2014 |
DBLP DOI BibTeX RDF |
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23 | Ole Kristian Ekseth, Martin Kuiper, Vladimir Mironov |
orthAgogue: an agile tool for the rapid prediction of orthology relations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 30(5), pp. 734-736, 2014. The full citation details ...](Pics/full.jpeg) |
2014 |
DBLP DOI BibTeX RDF |
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23 | Manuel Lafond, Magali Semeria, Krister M. Swenson, Eric Tannier, Nadia El-Mabrouk |
Gene tree correction guided by orthology. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 14(S-15), pp. S5, 2013. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP DOI BibTeX RDF |
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23 | Matthew D. Whiteside, Geoffrey L. Winsor, Matthew R. Laird, Fiona S. L. Brinkman |
OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 41(Database-Issue), pp. 366-376, 2013. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP DOI BibTeX RDF |
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23 | Darren S. Curtis, Aaron R. Phillips, Stephen J. Callister, Sean Conlan, Lee Ann McCue |
SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 29(20), pp. 2641-2642, 2013. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP DOI BibTeX RDF |
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23 | Steffen Priebe, Uwe Menzel |
Assignment of Orthologous Genes by Utilization of Multiple Databases - The Orthology Package in R. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIOINFORMATICS ![In: BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11 - 14 February, 2013., pp. 105-110, 2013, SciTePress, 978-989-8565-35-8. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP BibTeX RDF |
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23 | Gloria C.-L. Fu, Wen-Chang Lin |
Identification of gene-oriented exon orthology between human and mouse. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Genom. ![In: BMC Genom. 13(S-1), pp. S10, 2012. The full citation details ...](Pics/full.jpeg) |
2012 |
DBLP DOI BibTeX RDF |
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23 | Chenggang Yu, Valmik Desai, Li Cheng, Jaques Reifman |
QuartetS-DB: a large-scale orthology database for prokaryotes and eukaryotes inferred by evolutionary evidence. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 13, pp. 143, 2012. The full citation details ...](Pics/full.jpeg) |
2012 |
DBLP DOI BibTeX RDF |
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23 | Pavol Jancura, Eleftheria Mavridou, Enrique Carrillo-de Santa Pau, Elena Marchiori |
A methodology for detecting the orthology signal in a PPI network at a functional complex level. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 13(S-10), pp. S18, 2012. The full citation details ...](Pics/full.jpeg) |
2012 |
DBLP DOI BibTeX RDF |
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23 | Wei Peng 0004, Jianxin Wang 0001, Weiping Wang 0003, Qing Liu, Fang-Xiang Wu, Yi Pan 0001 |
Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Syst. Biol. ![In: BMC Syst. Biol. 6, pp. 87, 2012. The full citation details ...](Pics/full.jpeg) |
2012 |
DBLP DOI BibTeX RDF |
|
23 | Adrian M. Altenhoff |
Orthology inference: Methods, benchmarking and applications. ![Search on Bibsonomy](Pics/bibsonomy.png) |
|
2012 |
RDF |
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23 | Benjamin Linard, Julie Dawn Thompson, Olivier Poch, Odile Lecompte |
OrthoInspector: comprehensive orthology analysis and visual exploration. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 12, pp. 11, 2011. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
|
23 | Colin N. Dewey |
Positional orthology: putting genomic evolutionary relationships into context. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 12(5), pp. 401-412, 2011. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
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23 | David M. Kristensen, Yuri I. Wolf, Arcady R. Mushegian, Eugene V. Koonin |
Computational methods for Gene Orthology inference. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 12(5), pp. 379-391, 2011. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
|
23 | Christophe Dessimoz |
Editorial: Orthology and applications. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 12(5), pp. 375-376, 2011. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
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23 | Eugene V. Koonin |
Obituary: Walter Fitch and the orthology paradigm. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 12(5), pp. 377-378, 2011. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
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23 | Thomas Schmitt 0003, David N. Messina, Fabian Schreiber, Erik L. L. Sonnhammer |
Letter to the Editor: SeqXML and OrthoXML: standards for sequence and orthology information. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 12(5), pp. 485-488, 2011. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
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23 | Jaime Huerta-Cepas, Salvador Capella-Gutiérrez, Leszek P. Pryszcz, Ivan Denisov, Diego Kormes, Marina Marcet-Houben, Toni Gabaldón |
PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 39(Database-Issue), pp. 556-560, 2011. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
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23 | Adrian M. Altenhoff, Adrian Schneider, Gaston H. Gonnet, Christophe Dessimoz |
OMA 2011: orthology inference among 1000 complete genomes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 39(Database-Issue), pp. 289-294, 2011. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
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23 | Pavol Jancura, Eleftheria Mavridou, Beatriz Pontes, Elena Marchiori |
Describing the Orthology Signal in a PPI Network at a Functional, Complex Level. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISBRA ![In: Bioinformatics Research and Applications - 7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011. Proceedings, pp. 209-226, 2011, Springer, 978-3-642-21259-8. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
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23 | Sabine Thuß |
Greedy phylogeny-based orthology assignment and its application to the evolutionary analysis of metabolic coupling. ![Search on Bibsonomy](Pics/bibsonomy.png) |
|
2011 |
RDF |
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23 | Fadi Towfic, Susan VanderPlas, Casey A. Oliver, Oliver Couture, Christopher K. Tuggle, M. Heather West Greenlee, Vasant G. Honavar |
Detection of gene orthology from gene co-expression and protein interaction networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 11(S-3), pp. 7, 2010. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
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23 | Adnan S. Syed, Matteo D'Antonio, Francesca D. Ciccarelli |
Network of Cancer Genes: a web resource to analyze duplicability, orthology and network properties of cancer genes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 38(Database-Issue), pp. 670-675, 2010. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
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23 | Gabriel Östlund, Thomas Schmitt 0003, Kristoffer Forslund, Tina Köstler, David N. Messina, Sanjit Roopra, Oliver Frings, Erik L. L. Sonnhammer |
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 38(Database-Issue), pp. 196-203, 2010. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
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23 | Gang Fang, Nitin Bhardwaj, Rebecca Robilotto, Mark B. Gerstein |
Getting Started in Gene Orthology and Functional Analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PLoS Comput. Biol. ![In: PLoS Comput. Biol. 6(3), 2010. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
|
23 | José Antonio Miñarro-Giménez, Marisa Madrid, Jesualdo Tomás Fernández-Breis |
OGO: an ontological approach for integrating knowledge about orthology. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 10(S-10), pp. 13, 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
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23 | Alexander C. J. Roth, Gaston H. Gonnet, Christophe Dessimoz |
Algorithm of OMA for large-scale orthology inference. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 10, 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
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23 | Ruchira S. Datta, Christopher Meacham, Bushra Samad, Christoph Neyer, Kimmen Sjölander |
Berkeley PHOG: PhyloFacts orthology group prediction web server. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 37(Web-Server-Issue), pp. 84-89, 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
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23 | Arnold Kuzniar, Ke Lin, Ying He, Harm Nijveen, Sándor Pongor, Jack A. M. Leunissen |
ProGMap: an integrated annotation resource for protein orthology. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 37(Web-Server-Issue), pp. 428-434, 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
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23 | Mohammed Monzoorul Haque, Tarini Shankar Ghosh, Dinakar Komanduri, Sharmila S. Mande |
SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 25(14), pp. 1722-1730, 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
23 | José Antonio Miñarro-Giménez, Marisa Madrid, Jesualdo Tomás Fernández-Breis |
Semantic integration and exploitation of orthology information and genetic disorders. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SWAT4LS ![In: Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, Amsterdam, The Netherlands, November 20, 2009, 2009, CEUR-WS.org. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP BibTeX RDF |
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23 | Fadi Towfic, M. Heather West Greenlee, Vasant G. Honavar |
Detection of Gene Orthology Based on Protein-Protein Interaction Networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBM ![In: 2009 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2009, Washington, DC, USA, November 1-4, 2009, Proceedings, pp. 48-53, 2009, IEEE Computer Society, 978-0-7695-3885-3. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
23 | Alexander C. J. Roth, Gaston H. Gonnet, Christophe Dessimoz |
Algorithm of OMA for large-scale orthology inference. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 9, 2008. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
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23 | José M. G. Izarzugaza, David de Juan, Carles Pons, Florencio Pazos, Alfonso Valencia |
Enhancing the prediction of protein pairings between interacting families using orthology information. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 9, 2008. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
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23 | Rohit Singh 0001, Jinbo Xu, Bonnie Berger |
Global alignment of multiple protein interaction networks with application to functional orthology detection. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Proc. Natl. Acad. Sci. USA ![In: Proc. Natl. Acad. Sci. USA 105(35), pp. 12763-12768, 2008. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
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23 | René T. J. M. van der Heijden, Berend Snel, Vera van Noort, Martijn A. Huynen |
Orthology prediction at scalable resolution by phylogenetic tree analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 8, 2007. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
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23 | Tina A. Eyre, Mathew W. Wright, Michael J. Lush, Elspeth A. Bruford |
HCOP: a searchable database of human orthology predictions. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 8(1), pp. 2-5, 2007. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
23 | Bas E. Dutilh, Vera van Noort, René T. J. M. van der Heijden, T. Boekhout, Berend Snel, Martijn A. Huynen |
Assessment of phylogenomic and orthology approaches for phylogenetic inference. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 23(7), pp. 815-824, 2007. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
23 | Meena K. Sakharkar, Kishore R. Sakharkar |
Targetability and Orthology of Human Disease Genes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIOCOMP ![In: International Conference on Bioinformatics & Computational Biology, BIOCOMP 2007, Volume I, June 25-28, 2007, Las Vegas Nevada, USA, pp. 181-187, 2007, CSREA Press, 1-60132-040-X. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP BibTeX RDF |
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23 | Mary Qu Yang, Laura Elnitski |
Orthology and Multiple Class Prediction of Functional Elements in the Human Genome. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIOCOMP ![In: International Conference on Bioinformatics & Computational Biology, BIOCOMP 2007, Volume I, June 25-28, 2007, Las Vegas Nevada, USA, pp. 218-228, 2007, CSREA Press, 1-60132-040-X. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP BibTeX RDF |
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23 | Leo Goodstadt, Chris P. Ponting |
Phylogenetic Reconstruction of Orthology, Paralogy, and Conserved Synteny for Dog and Human. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PLoS Comput. Biol. ![In: PLoS Comput. Biol. 2(9), 2006. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
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