Search results for "pathogenicity"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
49	Juan J. Diaz-Montana, Owen J. L. Rackham, Norberto Díaz-Díaz, Enrico Petretto	Web-based Gene Pathogenicity Analysis (WGPA): a web platform to interpret gene pathogenicity from personal genome data.	Bioinform.	2016	DBLP DOI BibTeX RDF
36	Arvind K. Bansal, Christopher Woolverton	Applying Automatically Derived Gene-Groups to Automatically Predict and Refine Metabolic Pathways.	IEEE Trans. Knowl. Data Eng.	2003	DBLP DOI BibTeX RDF	enzymes, gene-groups, microbes, operons, orthologs, pathogenicity, Automation, homologs, drug-discovery, pathway, metabolic pathway, bacteria
28	Paul Dan Cristea, Rodica Tuduce, Jan Cornelis 0001	Inserts in prokaryotegenomes.	BIBE	2008	DBLP DOI BibTeX RDF
28	Xudong Huang	Metallobiochemistry of Alzheimer's Disease and Its Theranostic Agent Development.	BIBE	2007	DBLP DOI BibTeX RDF
28	Iuri Fanti, Mattia C. F. Prosperi, Giovanni Ulivi, Alessandro Micarelli	HIV-1 Coreceptor Usage Prediction via Indexed Local Kernel Smoothing Methods and Grid-Based Multiple Statistical Validation.	CBMS	2007	DBLP DOI BibTeX RDF
24	Hao Zhang 0064, Jiao Jiao, Tianheng Zhao, Enshuang Zhao, Lanhui Li, Guihua Li, Borui Zhang, Qing-Ming Qin	GERWR: Identifying the Key Pathogenicity- Associated sRNAs of Magnaporthe Oryzae Infection in Rice Based on Graph Embedding and Random Walk With Restart.	IEEE ACM Trans. Comput. Biol. Bioinform.	2024	DBLP DOI BibTeX RDF
24	Ke Bai, Lu Yang, Jian Xue, Lin Zhao, Fanchang Hao	Pathogenicity classification of missense mutations based on deep generative model.	Comput. Biol. Medicine	2024	DBLP DOI BibTeX RDF
24	Zheng Wang 0069, Guihu Zhao, Bin Li, Zhenghuan Fang, Qian Chen, Xiaomeng Wang, Tengfei Luo, Yijing Wang 0003, Qiao Zhou, Kuokuo Li, Lu Xia, Yi Zhang, Xun Zhou, Hongxu Pan, Yuwen Zhao, Yige Wang, Lin Wang, Jifeng Guo, Beisha Tang, Kun Xia, Jinchen Li	Performance Comparison of Computational Methods for the Prediction of the Function and Pathogenicity of Non-coding Variants.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
24	Shi-Yuan Tong, Ke Fan, Zai-Wei Zhou, Lin-Yun Liu, Shu-Qing Zhang, Yinghui Fu, Guang-Zhong Wang, Ying Zhu 0012, Yong-Chun Yu	mvPPT: A Highly Efficient and Sensitive Pathogenicity Prediction Tool for Missense Variants.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
24	Enas M. F. El Houby	Correction to: Machine learning techniques for pathogenicity prediction of non-synonymous single nucleotide polymorphisms in human body.	J. Ambient Intell. Humaniz. Comput.	2023	DBLP DOI BibTeX RDF
24	Enas M. F. El Houby	Machine learning techniques for pathogenicity prediction of non-synonymous single nucleotide polymorphisms in human body.	J. Ambient Intell. Humaniz. Comput.	2023	DBLP DOI BibTeX RDF
24	Tzu-Hsuan Wu, Peng-Chan Lin, Hsin-Hung Chou, Meng-Ru Shen, Sun-Yuan Hsieh	Pathogenicity Prediction of Single Amino Acid Variants With Machine Learning Model Based on Protein Structural Energies.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
24	Lijun Quan, Xiaomin Chu, Xiaoyu Sun 0006, Tingfang Wu, Qiang Lyu	How Deepbics Quantifies Intensities of Transcription Factor-DNA Binding and Facilitates Prediction of Single Nucleotide Variant Pathogenicity With a Deep Learning Model Trained On ChIP-Seq Data Sets.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
24	Yuya Hatano, Tomohiko Ishihara, Osamu Onodera	Accuracy of a machine learning method based on structural and locational information from AlphaFold2 for predicting the pathogenicity of TARDBP and FUS gene variants in ALS.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
24	Xiao Fan, Hongbing Pan, Alan Tian, Wendy K. Chung, Yufeng Shen	SHINE: protein language model-based pathogenicity prediction for short inframe insertion and deletion variants.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
24	Boshen Wang, Xue Lei, Wei Tian 0003, Alan Perez-Rathke, Yan-Yuan Tseng, Jie Liang 0002	Structure-based pathogenicity relationship identifier for predicting effects of single missense variants and discovery of higher-order cancer susceptibility clusters of mutations.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
24	Axel Schmidt 0007, Sebastian Röner, Karola Mai, Hannah Klinkhammer, Martin Kircher, Kerstin U. Ludwig	Predicting the pathogenicity of missense variants using features derived from AlphaFold2.	Bioinform.	2023	DBLP DOI BibTeX RDF
24	Huixin Zhan, Zijun Zhang	ProPath: Disease-Specific Protein Language Model for Variant Pathogenicity.	CoRR	2023	DBLP DOI BibTeX RDF
24	Samuel J. Aronson, Kalotina Machini, Pranav Sriraman, Jiyeon Shin, Emma R. Henricks, Charlotte Mailly, Angie J. Nottage, Michael Oates, Matthew S. Lebo	Using GPT-4 Prompts to Determine Whether Articles Contain Functional Evidence Supporting or Refuting Variant Pathogenicity.	CoRR	2023	DBLP DOI BibTeX RDF
24	Ke Li, James M. McCaw, Pengxing Cao	Enhanced viral infectivity and reduced interferon production are associated with high pathogenicity for influenza viruses.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
24	Yijia Chen, Yiwen Chen, Shanling Nie, Hai Yang 0002	PMMVar: Leveraging Multi-level Protein Structures for Enhanced Coding Variant Pathogenicity Prediction.	BIBM	2023	DBLP DOI BibTeX RDF
24	Alam Ahmad Hidayat, Joko Pebrianto Trinugroho, Rudi Nirwantono, Digdo Sudigyo, Bens Pardamean	Utilizing Semi-supervised Method in Predicting BRCA1 Pathogenicity Variants.	ICCSCI	2023	DBLP DOI BibTeX RDF
24	Philipp Rentzsch	Using machine learning to predict pathogenicity of genomic variants throughout the human genome.		2023	RDF
24	Shaked Naor-Hoffmann, Dina Svetlitsky, Neta Sal-Man, Yaron Orenstein, Michal Ziv-Ukelson	Predicting the pathogenicity of bacterial genomes using widely spread protein families.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
24	Yaning Yang, Xiaoqi Wang, Deshan Zhou, Dong-Qing Wei, Shaoliang Peng	SVPath: an accurate pipeline for predicting the pathogenicity of human exon structural variants.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
24	Mingyan Fang, Zheng Su, Hassan Abolhassani, Yuval Itan, Xin Jin, Lennart Hammarström	VIPPID: a gene-specific single nucleotide variant pathogenicity prediction tool for primary immunodeficiency diseases.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
24	Barbara Poszewiecka, Victor Murcia Pienkowski, Karol Nowosad, Jérôme D. Robin, Krzysztof Gogolewski, Anna Gambin	`TADeus2`: a web server facilitating the clinical diagnosis by pathogenicity assessment of structural variations disarranging 3D chromatin structure.	Nucleic Acids Res.	2022	DBLP DOI BibTeX RDF
24	Liangpeng Nie, Lijun Quan, Tingfang Wu, Ruji He, Qiang Lyu	TransPPMP: predicting pathogenicity of frameshift and non-sense mutations by a Transformer based on protein features.	Bioinform.	2022	DBLP DOI BibTeX RDF
24	Reza Alibakhshi, Mohsen Kazeminia, Keivan Moradi	The pathogenicity classification of PAH gene variants in the Iranian population.	Comput. Biol. Chem.	2022	DBLP DOI BibTeX RDF
24	Metin Yazar, Pemra Ozbek	Assessment of 13 in silico pathogenicity methods on cancer-related variants.	Comput. Biol. Medicine	2022	DBLP DOI BibTeX RDF
24	Ke Bai 0006, Zhendong Liu, Xinrong Lv, Dongyan Li, Xi Chen, Xiaofeng Li, Junxue Zhou	Pathogenicity predicting algorithm of single amino acid variants.	CIS	2022	DBLP DOI BibTeX RDF
24	Dareen Alyousfi, Diana Baralle, Andrew Collins 0001	Essentiality-specific pathogenicity prioritization gene score to improve filtering of disease sequence data.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
24	Dhong-Gun Won, Dong-Wook Kim, Junwoo Woo, Kyoungyeul Lee	3Cnet: pathogenicity prediction of human variants using multitask learning with evolutionary constraints.	Bioinform.	2021	DBLP DOI BibTeX RDF
24	Bas Vroling, Stephan Heijl	White paper: The Helix Pathogenicity Prediction Platform.	CoRR	2021	DBLP BibTeX RDF
24	Alessandro F. Gualtieri, Mauro Leoncini, Lorenzo Rinaldi, Alessandro Zoboli, Dario Di Giuseppe	WebFPTI: A tool to predict the toxicity/pathogenicity of mineral fibres including asbestos.	Earth Sci. Informatics	2021	DBLP DOI BibTeX RDF
24	Xuyang Zhen, Guan Ning Lin	PPSNV: A Novel Predictor for Pathogenicity of Nonsynonymous SNV based on Ensemble Learning.	ICBBS	2021	DBLP DOI BibTeX RDF
24	Luca Ponzoni, Daniel A. Peñaherrera, Zoltán N. Oltvai, Ivet Bahar	Rhapsody: predicting the pathogenicity of human missense variants.	Bioinform.	2020	DBLP DOI BibTeX RDF
24	Luying Pan	The Molecular Dynamics Study on the PATHOGENICITy of Cystatin C Mutant.	ICBBE	2020	DBLP DOI BibTeX RDF
24	Naeem Rehmat, Hammad Farooq, Sanjay Kumar, Sibt ul Hussain, Hammad Naveed	Predicting the pathogenicity of protein coding mutations using Natural Language Processing.	EMBC	2020	DBLP DOI BibTeX RDF
24	Enrico Mossotto, J. J. Ashton, L. O'Gorman, Reuben J. Pengelly, R. M. Beattie, Ben D. MacArthur, Sarah Ennis	GenePy - a score for estimating gene pathogenicity in individuals using next-generation sequencing data.	BMC Bioinform.	2019	DBLP DOI BibTeX RDF
24	Ning Tang, Thomas D. Sandahl, Peter Ott, Kasper P. Kepp	Computing the Pathogenicity of Wilson's Disease ATP7B Mutations: Implications for Disease Prevalence.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
24	Ning Tang, Budheswar Dehury, Kasper P. Kepp	Computing the Pathogenicity of Alzheimer's Disease Presenilin 1 Mutations.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
24	Roberto Preste, Ornella Vitale, Rosanna Clima, Giuseppe Gasparre, Marcella Attimonelli	HmtVar: a new resource for human mitochondrial variations and pathogenicity data.	Nucleic Acids Res.	2019	DBLP DOI BibTeX RDF
24	Eran Barash, Neta Sal-Man, Sivan Sabato, Michal Ziv-Ukelson	BacPaCS - Bacterial Pathogenicity Classification via Sparse-SVM.	Bioinform.	2019	DBLP DOI BibTeX RDF
24	Kymberleigh A. Pagel, Danny Antaki, Aojie Lian, Matthew E. Mort, David N. Cooper, Jonathan Sebat, Lilia M. Iakoucheva, Sean D. Mooney, Predrag Radivojac	Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome.	PLoS Comput. Biol.	2019	DBLP DOI BibTeX RDF
24	Abhishek Niroula, Mauno Vihinen	How good are pathogenicity predictors in detecting benign variants?	PLoS Comput. Biol.	2019	DBLP DOI BibTeX RDF
24	Akshay Chadha, Rozita Dara 0001, Zvonimir Poljak	Convolutional Classification of Pathogenicity in H5 Avian Influenza Strains.	ICMLA	2019	DBLP DOI BibTeX RDF
24	Juan M. R. Albano, Nahuel Mussini, Roxana Toriano, Julio C. Facelli, Marta B. Ferraro, Mónica Pickholz	Calcium interactions with Cx26 hemmichannel: Spatial association between MD simulations biding sites and variant pathogenicity.	Comput. Biol. Chem.	2018	DBLP DOI BibTeX RDF
24	Diana F. Rojas-Rengifo, María Camila Alvarez-Silva, Cindy P. Ulloa-Guerrero, Vanessa Lucía Nuñez-Velez, María del Pilar Delgado, Sonia Milena Aguilera, Harold Castro, Carlos Alberto Jaramillo, Andrés Fernando González Barrios	Intramolecular energies of the cytotoxic protein CagA of Helicobacter pylori as a possible descriptor of strains' pathogenicity level.	Comput. Biol. Chem.	2018	DBLP DOI BibTeX RDF
24	Krzysztof Bartoszek, Marta Majchrzak, Sebastian Sakowski, Anna B. Kubiak-Szeligowska, Ingemar Kaj, Pawel Parniewski	Predicting pathogenicity behavior in Escherichia coli population through a state dependent model and TRS profiling.	PLoS Comput. Biol.	2018	DBLP DOI BibTeX RDF
24	Shuang Li, K. Joeri van der Velde, Morris A. Swertz	Machine Learning for Multi-Omics Data Integration and Variant Pathogenicity Estimation.	eScience	2018	DBLP DOI BibTeX RDF
24	R. Michael Sivley	Constraint on Rare Protein-Coding Variation: Pathogenicity Prediction and Phenotypic Discovery.		2018	RDF
24	Parul Mehrotra, Kanury Rao, Samrat Chatterjee	A mathematical model predicting host mitochondrial pyruvate transporter activity to be a critical regulator of Mycobacterium tuberculosis pathogenicity.	Biosyst.	2017	DBLP DOI BibTeX RDF
24	Sanjay Sonney, Jeremy Leipzig, Marie T. Lott, Shiping Zhang, Vincent Procaccio, Douglas C. Wallace, Neal Sondheimer	Predicting the pathogenicity of novel variants in mitochondrial tRNA with MitoTIP.	PLoS Comput. Biol.	2017	DBLP DOI BibTeX RDF
24	Jacob Shujui Hsu, Johnny S. H. Kwan, Zhicheng Pan, Maria-Mercè Garcia-Barcelo, Pak Chung Sham, Miao-Xin Li	Inheritance-mode specific pathogenicity prioritization (ISPP) for human protein coding genes.	Bioinform.	2016	DBLP DOI BibTeX RDF
24	Seema Patel	In silico analysis of Hepatitis C virus (HCV) polyprotein domains and their comparison with other pathogens and allergens to gain insight on pathogenicity mechanisms.	Comput. Biol. Chem.	2016	DBLP DOI BibTeX RDF
24	Arjun K. Manrai, Brice L. Wang, Chirag J. Patel, Isaac S. Kohane	Reproducible and Shareable Quantifications of Pathogenicity.	PSB	2016	DBLP BibTeX RDF
24	Arnon Benshahar, Vered Chalifa-Caspi, Danny Hermelin, Michal Ziv-Ukelson	A Biclique Approach to Reference Anchored Gene Blocks and Its Applications to Pathogenicity Islands.	WABI	2016	DBLP DOI BibTeX RDF
24	Sabine C. Mueller, Christina Backes, Jan Haas, Hugo A. Katus, Benjamin Meder, Eckart Meese, Andreas Keller	Pathogenicity prediction of non-synonymous single nucleotide variants in dilated cardiomyopathy.	Briefings Bioinform.	2015	DBLP DOI BibTeX RDF
24	Nadine Castelhano Santos, Maria Olívia Pereira, Anália Lourenço	Pathogenicity phenomena in three model systems: from network mining to emerging system-level properties.	Briefings Bioinform.	2015	DBLP DOI BibTeX RDF
24	Sung Ho Yoon, Young-Kyu Park, Jihyun F. Kim	PAIDB v2.0: exploration and analysis of pathogenicity and resistance islands.	Nucleic Acids Res.	2015	DBLP DOI BibTeX RDF
24	Daniel Quang, Yifei Chen, Xiaohui Xie	DANN: a deep learning approach for annotating the pathogenicity of genetic variants.	Bioinform.	2015	DBLP DOI BibTeX RDF
24	Mansuck Kim, Huan Zhang, Charles Woloshuk, Won-Bo Shim, Byung-Jun Yoon	Computational identification of key functional genes associated with fusarium verticillioides pathogenicity.	BCB	2015	DBLP DOI BibTeX RDF
24	Yi Zhang, Shili Jia, Haiyun Huang	The prediction of pathogenicity of the influenza virus based on HA protein sequences.	ICMLC	2014	DBLP DOI BibTeX RDF
24	Mansuck Kim, Huan Zhang, Charles Woloshuk, Won-Bo Shim, Byung-Jun Yoon	Computational identification of functional network modules associated with the pathogenicity of Fusarium verticillioides.	BCB	2014	DBLP DOI BibTeX RDF
24	Richard Röttger, Prabhav Kalaghatgi, Peng Sun 0008, Siomar de Castro Soares, Vasco Ariston de Carvalho Azevedo, Tobias Wittkop, Jan Baumbach	Density parameter estimation for finding clusters of homologous proteins - tracing actinobacterial pathogenicity lifestyles.	Bioinform.	2013	DBLP DOI BibTeX RDF
24	David K. Crockett, Elaine Lyon, Marc S. Williams, Scott P. Narus, Julio C. Facelli, Joyce A. Mitchell	Utility of gene-specific algorithms for predicting pathogenicity of uncertain gene variants.	J. Am. Medical Informatics Assoc.	2012	DBLP DOI BibTeX RDF
24	Oleg N. Reva, Oliver Bezuidt	Visualization of Distribution of Pathogenicity Genomic Islands between Pathogenic, Nosocomial and Environmental Bacteria.	IV	2012	DBLP DOI BibTeX RDF
24	Ruiguang Ge, Weiran Shan	Bacterial Phosphoproteomic Analysis Reveals the Correlation Between Protein Phosphorylation and Bacterial Pathogenicity.	Genom. Proteom. Bioinform.	2011	DBLP DOI BibTeX RDF
24	Stewart T. Chang, Nicolas Tchitchek, Debashis Ghosh, Arndt Benecke, Michael G. Katze	A chemokine gene expression signature derived from meta-analysis predicts the pathogenicity of viral respiratory infections.	BMC Syst. Biol.	2011	DBLP DOI BibTeX RDF
24	Li-Ping Xie, Sheng-feng Weng, Shao-Shi He, Shu-wei Tian	Bioinformatics analysis of CagM protein in Helicobacter pylori Cag pathogenicity island.	FSKD	2011	DBLP DOI BibTeX RDF
24	Su Yean Ong, Fui Ling Ng, Siti Suriawati Badai, Anton Yuryev, Maqsudul Alam	Analysis and construction of pathogenicity island regulatory pathways in Salmonella enterica serovar Typhi.	J. Integr. Bioinform.	2010	DBLP DOI BibTeX RDF
24	Jamal Alhiyafi, Cavitha Sabesan, Shiyong Lu, Jeffrey L. Ram	Association analysis between Intragenomic Gene Conversions and pathogenicity in genomes of Escherichia coli and Shigella spp.: a scientific workflow approach.	Int. J. Funct. Informatics Pers. Medicine	2009	DBLP DOI BibTeX RDF
24	Sachin Pundhir, Hemant Vijayvargiya, Anil Kumar	PredictBias: A Server for the Identification of Genomic and Pathogenicity Islands in Prokaryotes.	Silico Biol.	2008	DBLP BibTeX RDF
24	Sung Ho Yoon, Young-Kyu Park, Soohyun Lee, Doil Choi, Tae Kwang Oh, Cheol-Goo Hur, Jihyun F. Kim	Towards pathogenomics: a web-based resource for pathogenicity islands.	Nucleic Acids Res.	2007	DBLP DOI BibTeX RDF
24	F. Collyn, Lionel Guy, M. Marceau, M. Simonet, Claude-Alain H. Roten	Describing ancient horizontal gene transfers at the nucleotide and gene levels by comparative pathogenicity island genometrics.	Bioinform.	2006	DBLP DOI BibTeX RDF
24	Georgios S. Vernikos, Julian Parkhill	Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands.	Bioinform.	2006	DBLP DOI BibTeX RDF
24	Sung Ho Yoon, Cheol-Goo Hur, Ho-Young Kang, Yeoun Hee Kim, Tae Kwang Oh, Jihyun F. Kim	A computational approach for identifying pathogenicity islands in prokaryotic genomes.	BMC Bioinform.	2005	DBLP DOI BibTeX RDF
24	Pietro Liò, Marina Vannucci	Finding pathogenicity islands and gene transfer events in genome data.	Bioinform.	2000	DBLP DOI BibTeX RDF