Search results for "pedigrees"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
179	Lan Liu 0001, Xi Chen 0001, Jing Xiao, Tao Jiang 0001	Complexity and Approximation of the Minimum Recombination Haplotype Configuration Problem.	ISAAC	2005	DBLP DOI BibTeX RDF	L-reduction, positive result, negative result, bounded number, mates, complexity, approximation, children, SNP, recombinant, Haplotyping, pedigree
148	Jirí Srba	On Counting the Number of Consistent Genotype Assignments for Pedigrees.	FSTTCS	2005	DBLP DOI BibTeX RDF
95	Matti Pirinen, Dario Gasbarra	Finding Consistent Gene Transmission Patterns on Large and Complex Pedigrees.	IEEE ACM Trans. Comput. Biol. Bioinform.	2006	DBLP DOI BibTeX RDF	sorting and searching, consistent genotype configuration, constraint satisfaction, biology and genetics, Backtracking, heuristic methods, pedigree
77	Bonnie Kirkpatrick, Javier Rosa, Eran Halperin, Richard M. Karp	Haplotype Inference in Complex Pedigrees.	RECOMB	2009	DBLP DOI BibTeX RDF
77	Giuliano Antoniol, Michele Ceccarelli, Vincenzo Fabio Rollo, Wanda Longo, Teresa Nutile, Marina Ciullo, Enza Colonna, Antonietta Calabria, Maria Astore, Anna Lembo, Paola Toriello, M. Grazia Persico	Browsing Large Pedigrees to Study of the Isolated Populations in the "Parco Nazionale del Cilento e Vallo di Diano".	WIRN	2003	DBLP DOI BibTeX RDF
59	Jing Xiao, Tiancheng Lou, Tao Jiang 0001	An Efficient Algorithm for Haplotype Inference on Pedigrees with a Small Number of Recombinants (Extended Abstract).	ESA	2009	DBLP DOI BibTeX RDF	probabilistic model, computational biology, combinatorial algorithm, recombination, haplotype inference, pedigree
54	Martí Sánchez-Fibla, Simon de Givry, Thomas Schiex	Mendelian Error Detection in Complex Pedigrees Using Weighted Constraint Satisfaction Techniques.	Constraints An Int. J.	2008	DBLP DOI BibTeX RDF	Mendelian genotyping error detection, Complex pedigrees, Weighted constraint satisfaction, Genetics
54	Charles Garner, Michael V. Doran, Herbert E. Longenecker Jr.	An Investigation into the Application of a Graphical, Rule-Based System Utilizing Reversible Data Structures as a Possible Model for Human Pedigree Systems (Abstract).	ACM Conference on Computer Science	1990	DBLP DOI BibTeX RDF
49	Eric A. Wernert, Jagannathan Lakshmipathy	PViN: a scalable and flexible system for visualizing pedigree databases.	SAC	2005	DBLP DOI BibTeX RDF	hereditary diseases, tree drawing, information visualization, databases, pedigrees
41	Qiangfeng Zhang, Yun Xu, Guoliang Chen 0001, Haoyang Che	Maximum-Likelihood Estimation of Haplotype Frequencies in Trio Pedigrees.	IMSCCS (1)	2006	DBLP DOI BibTeX RDF
41	Qiangfeng Zhang, Francis Y. L. Chin, Hong Shen 0001	Minimum Parent-Offspring Recombination Haplotype Inference in Pedigrees.	Trans. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF
41	Francis Y. L. Chin, Qiangfeng Zhang, Hong Shen 0001	k-Recombination Haplotype Inference in Pedigrees.	International Conference on Computational Science (2)	2005	DBLP DOI BibTeX RDF
41	Jing Li 0002, Tao Jiang 0001	An exact solution for finding minimum recombinant haplotype configurations on pedigrees with missing data by integer linear programming.	RECOMB	2004	DBLP DOI BibTeX RDF	missing data imputation, pedigree analysis, integer linear programming, branch-and-bound algorithm, recombination, haplotyping
41	Koichiro Doi, Jing Li 0002, Tao Jiang 0001	Minimum Recombiant Haplotype Configuration on Tree Pedigrees.	WABI	2003	DBLP DOI BibTeX RDF
36	Alexander Ilic, Florian Michahelles, Elgar Fleisch	The Dual Ownership Model: Using Organizational Relationships for Access Control in Safety Supply Chains.	AINA Workshops (2)	2007	DBLP DOI BibTeX RDF
36	Mark Silberstein, Dan Geiger, Assaf Schuster	A Distributed System for Genetic Linkage Analysis.	GCCB	2006	DBLP DOI BibTeX RDF
36	Arturas Mazeika, Janis Petersons, Michael H. Böhlen	PPPA: Push and Pull Pedigree Analyzer for Large and Complex Pedigree Databases.	ADBIS	2006	DBLP DOI BibTeX RDF
36	Luca Aceto, Jens A. Hansen, Anna Ingólfsdóttir, Jacob Johnsen, John Knudsen	The Complexity of Checking Consistency of Pedigree Information and Related Problems.	ICTCS	2003	DBLP DOI BibTeX RDF
31	Brendan Elliott, Z. Meral Özsoyoglu	Annotation suggestion and search for personal multimedia objects on the web.	CIVR	2008	DBLP DOI BibTeX RDF	annotation suggestion, personal photos and video, search languages, semantic multimedia management, social networks, pedigrees
23	Fabrice Kwiatkowski, Laurent Serlet, Andrzej Stos	Oncogenetic pedigrees: Relation between design and ability to predict mutation.	Biosyst.	2023	DBLP DOI BibTeX RDF
23	Magnus D. Vigeland	QuickPed: an online tool for drawing pedigrees and analysing relatedness.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
23	Elchanan Mossel, David Vulakh	Efficient Reconstruction of Stochastic Pedigrees: Some Steps From Theory to Practice.	CoRR	2022	DBLP DOI BibTeX RDF
23	Xiayuan Huang, Nicholas P. Tatonetti, Katie Larow, Brooke Delgoffee, John Mayer, David Page, Scott J. Hebbring	E-Pedigrees: a large-scale automatic family pedigree prediction application.	Bioinform.	2021	DBLP DOI BibTeX RDF
23	Andrew Lazar, Mario Banuelos, Suzanne Sindi, Roummel F. Marcia	Novel structural variant genome detection in extended pedigrees through negative binomial optimization.	ACSCC	2021	DBLP DOI BibTeX RDF
23	Christina Nieuwoudt, Angela Brooks-Wilson, Jinko Graham	SimRVSequences: an R package to simulate genetic sequence data for pedigrees.	Bioinform.	2020	DBLP DOI BibTeX RDF
23	Younhun Kim, Elchanan Mossel, Govind Ramnarayan, Paxton Turner	Efficient Reconstruction of Stochastic Pedigrees.	CoRR	2020	DBLP BibTeX RDF
23	Christian X. Weichenberger, Johannes Rainer, Cristian Pattaro, Peter P. Pramstaller, Francisco S. Domingues	Comparative assessment of different familial aggregation methods in the context of large and unstructured pedigrees.	Bioinform.	2019	DBLP DOI BibTeX RDF
23	Thomas Sherman, Jack M. Fu, Robert B. Scharpf, Alexandre Bureau, Ingo Ruczinski	Detection of rare disease variants in extended pedigrees using RVS.	Bioinform.	2019	DBLP DOI BibTeX RDF
23	Qi-Lei Zou, Xiao-Ping You, Jian-Long Li, Wing Kam Fung, Ji-Yuan Zhou	A powerful parent-of-origin effects test for qualitative traits on X chromosome in general pedigrees.	BMC Bioinform.	2018	DBLP DOI BibTeX RDF
23	Christina Nieuwoudt, Samantha J. Jones, Angela Brooks-Wilson, Jinko Graham	Simulating pedigrees ascertained for multiple disease-affected relatives.	Source Code Biol. Medicine	2018	DBLP DOI BibTeX RDF
23	Sergii Ivakhno, Eric Roller, Camilla Colombo, Philip Tedder, Anthony J. Cox	Canvas SPW: calling de novo copy number variants in pedigrees.	Bioinform.	2018	DBLP DOI BibTeX RDF
23	Mario Banuelos, Suzanne Sindi, Roummel F. Marcia	Structural Variant Prediction in Extended Pedigrees Through Sparse Negative Binomial Genome Signal Recovery.	EMBC	2018	DBLP DOI BibTeX RDF
23	Dan He 0001, Zhanyong Wang, Laxmi Parida, Eleazar Eskin	IPED2: Inheritance Path Based Pedigree Reconstruction Algorithm for Complicated Pedigrees.	IEEE ACM Trans. Comput. Biol. Bioinform.	2017	DBLP DOI BibTeX RDF
23	Julia Niskanen, Elina Salmela, Hannes Lohi	AncesTrim - a tool for trimming complex pedigrees.	J. Open Source Softw.	2017	DBLP DOI BibTeX RDF
23	Verena Heinrich, Tom Kamphans, Stefan Mundlos, Peter N. Robinson, Peter M. Krawitz	A likelihood ratio-based method to predict exact pedigrees for complex families from next-generation sequencing data.	Bioinform.	2017	DBLP DOI BibTeX RDF
23	Mee Yee Chan, Wun-Tat Chan, Francis Y. L. Chin, Stanley P. Y. Fung, Ming-Yang Kao	Haplotype Inference on Pedigrees Without Recombinations.	Encyclopedia of Algorithms	2016	DBLP DOI BibTeX RDF
23	Monika Solanki, Christopher Brewster	OntoPedigree: Modelling pedigrees for traceability in supply chains.	Semantic Web	2016	DBLP DOI BibTeX RDF
23	Jeremy D. Edwards, A. M. Baldo, Lukas A. Mueller	Ricebase: a breeding and genetics platform for rice, integrating individual molecular markers, pedigrees and whole-genome-based data.	Database J. Biol. Databases Curation	2016	DBLP DOI BibTeX RDF
23	Andrey Ziyatdinov, Helena Brunel, Angel Martinez-Perez, Alfonso Buil, Alexandre Perera, José Manuel Soria	solarius: an R interface to SOLAR for variance component analysis in pedigrees.	Bioinform.	2016	DBLP DOI BibTeX RDF
23	Po-Ju Yao, Ren-Hua Chung	SeqSIMLA2_exact: simulate multiple disease sites in large pedigrees with given disease status for diseases with low prevalence.	Bioinform.	2016	DBLP DOI BibTeX RDF
23	Johannes Rainer, Daniel Taliun, Yuri D'Elia, Cristian Pattaro, Francisco S. Domingues, Christian X. Weichenberger	FamAgg: an R package to evaluate familial aggregation of traits in large pedigrees.	Bioinform.	2016	DBLP DOI BibTeX RDF
23	Bonnie Kirkpatrick	Haplotype Inference for Pedigrees with Few Recombinations.	CoRR	2016	DBLP BibTeX RDF
23	Bonnie Kirkpatrick	Haplotype Inference for Pedigrees with Few Recombinations.	ISBRA	2016	DBLP DOI BibTeX RDF
23	Paul D. Shaw	Visualizing genetic transmission patterns in plant pedigrees.		2016	RDF
23	Haitao Jiang, Guohui Lin, Weitian Tong, Daming Zhu, Binhai Zhu	Isomorphism and similarity for 2-generation pedigrees.	BMC Bioinform.	2015	DBLP DOI BibTeX RDF
23	Monika Solanki, Christopher Brewster	Enhancing Visibility in EPCIS Governing Agri-Food Supply Chains via Linked Pedigrees.	Int. J. Semantic Web Inf. Syst.	2014	DBLP DOI BibTeX RDF
23	Paul D. Shaw, Martin Graham 0001, Jessie B. Kennedy, Iain Milne, David F. Marshall	Helium: visualization of large scale plant pedigrees.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
23	Nathan Medina-Rodríguez, Ángelo Santana, Ana M. Wägner, José M. Quinteiro	alleHap: an efficient algorithm to reconstruct zero-recombinant haplotypes from parent-offspring pedigrees.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
23	Paul D. Shaw, Martin Graham 0001, Jessie B. Kennedy, Iain Milne, David F. Marshall	Helium: Visualization of Large Scale Plant Pedigrees.	CoRR	2014	DBLP BibTeX RDF
23	Dan He 0001, Zhanyong Wang, Laxmi Parida, Eleazar Eskin	IPED2: Inheritance Path based Pedigree Reconstruction Algorithm for Complicated Pedigrees.	CoRR	2014	DBLP BibTeX RDF
23	Dan He 0001, Eleazar Eskin	IPED2X: A robust pedigree reconstruction algorithm for complicated pedigrees.	J. Bioinform. Comput. Biol.	2014	DBLP DOI BibTeX RDF
23	John G. Cleary, Ross Braithwaite, Kurt Gaastra, Brian S. Hilbush, Stuart Inglis, Sean A. Irvine, Alan Jackson, Richard Littin, Sahar Nohzadeh-Malakshah, Mehul Rathod, David Ware, Len Trigg, Francisco M. de la Vega	Joint Variant and De Novo Mutation Identification on Pedigrees from High-Throughput Sequencing Data.	J. Comput. Biol.	2014	DBLP DOI BibTeX RDF
23	Brady Cannon, Minoti Hiremath, Cheryl Jorcyk, Alark Joshi	CoVE: A Colony Visualization System for Animal Pedigrees.	VINCI	2014	DBLP DOI BibTeX RDF
23	Monika Solanki, Christopher Brewster	EPCIS Event-Based Traceability in Pharmaceutical Supply Chains via Automated Generation of Linked Pedigrees.	ISWC (1)	2014	DBLP DOI BibTeX RDF
23	Dan He 0001, Zhanyong Wang, Laxmi Parida, Eleazar Eskin	IPED2: inheritance path based pedigree reconstruction algorithm for complicated pedigrees.	BCB	2014	DBLP DOI BibTeX RDF
23	Mark Silberstein, Omer Weissbrod, Lars Otten, Anna Tzemach, Andrei Anisenia, Oren Shtark, Dvir Tuberg, Eddie Galfrin, Irena Gannon, Adel Shalata, Zvi U. Borochowitz, Rina Dechter, Elizabeth Thompson, Dan Geiger	A system for exact and approximate genetic linkage analysis of SNP data in large pedigrees.	Bioinform.	2013	DBLP DOI BibTeX RDF
23	Mark Silberstein, Omer Weissbrod, Lars Otten, Anna Tzemach, Andrei Anisenia, Oren Shtark, Dvir Tuberg, Eddie Galfrin, Irena Gannon, Adel Shalata, Zvi U. Borochowitz, Rina Dechter, Elizabeth Thompson, Dan Geiger	A system for exact and approximate genetic linkage analysis of SNP data in large pedigrees.	Bioinform.	2013	DBLP DOI BibTeX RDF
23	Monika Solanki, Christopher Brewster	Consuming Linked data in Supply Chains: Enabling data visibility via Linked Pedigrees.	COLD	2013	DBLP BibTeX RDF
23	Yuri Pirola, Gianluca Della Vedova, Paola Bonizzoni, Alessandra Stella, Filippo Biscarini	Haplotype-based prediction of gene alleles using pedigrees and SNP genotypes.	BCB	2013	DBLP DOI BibTeX RDF
23	Yuri Pirola, Paola Bonizzoni, Tao Jiang 0001	An Efficient Algorithm for Haplotype Inference on Pedigrees with Recombinations and Mutations.	IEEE ACM Trans. Comput. Biol. Bioinform.	2012	DBLP DOI BibTeX RDF
23	Trevor Paterson, Martin Graham 0001, Jessie B. Kennedy, Andy Law	VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees.	BMC Bioinform.	2012	DBLP DOI BibTeX RDF
23	Jing Xiao, Tiancheng Lou, Tao Jiang 0001	An Efficient Algorithm for Haplotype Inference on Pedigrees with a Small Number of Recombinants.	Algorithmica	2012	DBLP DOI BibTeX RDF
23	Yin Zhang, Weili Han, Wei Wang, Chang Lei	Optimizing the storage of massive electronic pedigrees in HDFS.	IOT	2012	DBLP DOI BibTeX RDF
23	Bonnie Kirkpatrick	Non-identifiable Pedigrees and a Bayesian Solution.	ISBRA	2012	DBLP DOI BibTeX RDF
23	Bonnie Kirkpatrick	Haplotypes versus genotypes on pedigrees.	Algorithms Mol. Biol.	2011	DBLP DOI BibTeX RDF
23	Duong Dai Doan, Patricia A. Evans	An FPT haplotyping algorithm on pedigrees with a small number of sites.	Algorithms Mol. Biol.	2011	DBLP DOI BibTeX RDF
23	Yuri Pirola, Gianluca Della Vedova, Stefano Biffani, Alessandra Stella, Paola Bonizzoni	Haplotype Inference on Pedigrees with Recombinations, Errors, and Missing Genotypes via SAT solvers	CoRR	2011	DBLP BibTeX RDF
23	Xin Li, Jing Li 0002	Haplotype Reconstruction in Large Pedigrees with Untyped Individuals through IBD Inference.	J. Comput. Biol.	2011	DBLP DOI BibTeX RDF
23	Lars Otten, Rina Dechter	Finding Most Likely Haplotypes in General Pedigrees Through Parallel Search with Dynamic Load Balancing.	Pacific Symposium on Biocomputing	2011	DBLP BibTeX RDF
23	Xin Li, Jing Li 0002	Haplotype Reconstruction in Large Pedigrees with Many Untyped Individuals.	RECOMB	2011	DBLP DOI BibTeX RDF
23	Trevor Paterson, Martin Graham 0001, Jessie B. Kennedy, Andy Law	Evaluating the VIPER pedigree visualisation: Detecting inheritance inconsistencies in genotyped pedigrees.	BioVis	2011	DBLP DOI BibTeX RDF
23	Louis-Philippe Lemieux Perreault, Gregor U. Andelfinger, Géraldine Asselin, Marie-Pierre Dubé	Partitioning of copy-number genotypes in pedigrees.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
23	Xin Li, Xiaolin Yin, Jing Li 0002	Efficient identification of identical-by-descent status in pedigrees with many untyped individuals.	Bioinform.	2010	DBLP DOI BibTeX RDF
23	Eric Yi Liu, Qi Zhang 0025, Leonard McMillan, Fernando Pardo-Manuel de Villena, Wei Wang 0010	Efficient genome ancestry inference in complex pedigrees with inbreeding.	Bioinform.	2010	DBLP DOI BibTeX RDF
23	Rosemarie Plaetke, Federico Balbi	PedMerge: merging pedigrees to facilitate family-based genetic statistical analyses.	Bioinform.	2010	DBLP DOI BibTeX RDF
23	Duong Dai Doan, Patricia A. Evans, Joseph D. Horton	A Near-Linear Time Algorithm for Haplotype Determination on General Pedigrees.	J. Comput. Biol.	2010	DBLP DOI BibTeX RDF
23	Bonnie Kirkpatrick, Eran Halperin, Richard M. Karp	Haplotype Inference in Complex Pedigrees.	J. Comput. Biol.	2010	DBLP DOI BibTeX RDF
23	Lan Liu 0001, Tao Jiang 0001	A linear-time algorithm for reconstructing zero-recombinant haplotype configuration on pedigrees without mating loops.	J. Comb. Optim.	2010	DBLP DOI BibTeX RDF
23	YuZhong Zhao, Yun Xu, Xiaohui Yao, Ying Wang, Guoliang Chen 0001	Xor Perfect Phylogeny Haplotyping in Pedigrees.	ICIC (2)	2010	DBLP DOI BibTeX RDF
23	Duong Dai Doan, Patricia A. Evans	Fixed-Parameter Algorithm for General Pedigrees with a Single Pair of Sites.	ISBRA	2010	DBLP DOI BibTeX RDF
23	Duong Dai Doan, Patricia A. Evans	Fixed-Parameter Algorithm for Haplotype Inferences on General Pedigrees with Small Number of Sites.	WABI	2010	DBLP DOI BibTeX RDF
23	Bonnie Kirkpatrick	Haplotypes versus Genotypes on Pedigrees.	WABI	2010	DBLP DOI BibTeX RDF
23	Yuri Pirola, Paola Bonizzoni, Tao Jiang 0001	Haplotype Inference on Pedigrees with Recombinations and Mutations.	WABI	2010	DBLP DOI BibTeX RDF
23	Haitao Jiang, Yun Xu, YuZhong Zhao, Guoliang Chen 0001	A heuristic algorithm for minimum-recombinant haplotyping in pedigrees: Implementation and parallelization.	ICIS	2010	DBLP DOI BibTeX RDF
23	Markus Riester, Peter F. Stadler, Konstantin Klemm	FRANz: reconstruction of wild multi-generation pedigrees.	Bioinform.	2009	DBLP DOI BibTeX RDF
23	En Cheng, Brendan Elliott, Z. Meral Özsoyoglu	Efficient Computation of Kinship and Identity Coefficients on Large Pedigrees.	J. Bioinform. Comput. Biol.	2009	DBLP DOI BibTeX RDF
23	Xin Li, Jing Li 0002	An Almost Linear Time Algorithm for a General Haplotype Solution on Tree Pedigrees with no Recombination and its Extensions.	J. Bioinform. Comput. Biol.	2009	DBLP DOI BibTeX RDF
23	Brendan Elliott, En Cheng, Stephen Mayes, Z. Meral Özsoyoglu	Efficiently calculating inbreeding on large pedigrees databases.	Inf. Syst.	2009	DBLP DOI BibTeX RDF
23	Maciej Gierdziewicz	Parallel Algorithm for Sorting animal Pedigrees.	Comput. Sci.	2009	DBLP DOI BibTeX RDF
23	Mee Yee Chan, Wun-Tat Chan, Francis Y. L. Chin, Stanley P. Y. Fung, Ming-Yang Kao	Linear-Time Haplotype Inference on Pedigrees without Recombinations and Mating Loops.	SIAM J. Comput.	2009	DBLP DOI BibTeX RDF
23	Bhalchandra D. Thatte	Combinatorics of Pedigrees I: Counterexamples to a Reconstruction Question.	SIAM J. Discret. Math.	2008	DBLP DOI BibTeX RDF
23	Christian Fuchsberger, Mario Falchi, Lukas Forer, Peter P. Pramstaller	PedVizApi: a Java API for the interactive, visual analysis of extended pedigrees.	Bioinform.	2008	DBLP DOI BibTeX RDF
23	Markus Riester, Peter F. Stadler, Konstantin Klemm	FRANz: Fast Reconstruction of Wild Pedigrees.	German Conference on Bioinformatics	2008	DBLP BibTeX RDF
23	Nadezhda M. Belonogova, Tatiana I. Axenovich	Optimal peeling order for pedigrees with incomplete genotypic information.	Comput. Biol. Chem.	2007	DBLP DOI BibTeX RDF
23	Martí Sánchez-Fibla, Simon de Givry, Thomas Schiex	Mendelian error detection in complex pedigrees using weighted constraint satisfaction techniques.	CCIA	2007	DBLP BibTeX RDF
23	Cornelis A. Albers, Martijn A. R. Leisink, Hilbert J. Kappen	The Cluster Variation Method for Efficient Linkage Analysis on Extended Pedigrees.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
23	Qiangfeng Zhang, YuZhong Zhao, Guoliang Chen 0001, Yun Xu	Estimate haplotype frequencies in pedigrees.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
23	Kristina Allen-Brady, Jathine Wong, Nicola J. Camp	PedGenie: an analysis approach for genetic association testing in extended pedigrees and genealogies of arbitrary size.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
23	Bethany Man-Yee Chan, Joseph Wun-Tat Chan, Francis Y. L. Chin, Stanley P. Y. Fung, Ming-Yang Kao	Linear-Time Haplotype Inference on Pedigrees Without Recombinations.	WABI	2006	DBLP DOI BibTeX RDF
23	Kui Zhang, Fengzhu Sun, Hongyu Zhao 0003	HAPLORE: a program for haplotype reconstruction in general pedigrees without recombination.	Bioinform.	2005	DBLP DOI BibTeX RDF