Search results for "phylogenetic"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
122	Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente	Metrics for Phylogenetic Networks II: Nodal and Triplets Metrics.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	tree-child phylogenetic network, time consistency, partition distance, nodal distance, triplets distance, Phylogenetic network, temporal representation
98	Dan Gusfield, Satish Eddhu, Charles H. Langley	Efficient Reconstruction of Phylogenetic Networks with Constrained Recombination.	CSB	2003	DBLP DOI BibTeX RDF
88	Jesper Jansson 0001, Wing-Kin Sung	The Maximum Agreement of Two Nested Phylogenetic Networks.	ISAAC	2004	DBLP DOI BibTeX RDF
84	Tingting Zhou, Keith C. C. Chan, Yi Pan 0001, Zhenghua Wang	An Approach for Determining Evolutionary Distance in Network-Based Phylogenetic Analysis.	ISBRA	2008	DBLP DOI BibTeX RDF	network-based phylogenetic analysis, metabolic network comparison, evolutionary distance, Jaccard distance, phylogenetic conservation, topological importance
84	Fengrong Ren, Hiroshi Tanaka, Noria Fukuda, Takashi Gojobori	Molecular evolutionary phylogenetic trees based on minimum description length principle.	HICSS (5)	1995	DBLP DOI BibTeX RDF	molecular evolutionary phylogenetic trees, minimum complexity phylogenetic tree, branch lengths, logarithmic likelihood, mitochondrial DNA sequences, complexity, trees (mathematics), inference mechanisms, DNA, genetics, biology computing, inductive inference, minimum description length principle, tree topology
69	Nikolaos Alachiotis 0001, Euripides Sotiriades, Apostolos Dollas, Alexandros Stamatakis	Exploring FPGAs for accelerating the phylogenetic likelihood function.	IPDPS	2009	DBLP DOI BibTeX RDF
69	Xizhou Feng, Kirk W. Cameron, Duncan A. Buell	Biology - PBPI: a high performance implementation of Bayesian phylogenetic inference.	SC	2006	DBLP DOI BibTeX RDF
69	Bernard M. E. Moret, Luay Nakhleh, Tandy J. Warnow, C. Randal Linder, Anna Tholse, Anneke Padolina, Jerry Sun 0001, Ruth E. Timme	Phylogenetic Networks: Modeling, Reconstructibility, and Accuracy.	IEEE ACM Trans. Comput. Biol. Bioinform.	2004	DBLP DOI BibTeX RDF
67	Daniel H. Huson	Drawing Rooted Phylogenetic Networks.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	rooted phylogenetic networks, graph drawing
67	Nguyen Bao Nguyen, C. Thach Nguyen, Wing-Kin Sung	Fast algorithms for computing the tripartition-based distance between phylogenetic networks.	J. Comb. Optim.	2007	DBLP DOI BibTeX RDF	Tripartition-based distance, Algorithm, Phylogenetic network
67	Leon Poladian	A GA for maximum likelihood phylogenetic inference using neighbour-joining as a genotype to phenotype mapping.	GECCO	2005	DBLP DOI BibTeX RDF	genotype to phenotype mapping, neighbour joining, genetic algorithms, maximum likelihood, phylogenetic inference
67	Luay Nakhleh, Guohua Jin, Fengmei Zhao, John M. Mellor-Crummey	Reconstructing Phylogenetic Networks Using Maximum Parsimony.	CSB	2005	DBLP DOI BibTeX RDF	phylogenetic networks, maximum parsimony, horizontal gene transfer
67	John Bluis, Dong-Guk Shin	Nodal Distance Algorithm: Calculating a Phylogenetic Tree Comparison Metri.	BIBE	2003	DBLP DOI BibTeX RDF	algorithm, phylogenetic tree, tree comparison
67	Jijun Tang, Bernard M. E. Moret	Phylogenetic Reconstruction from Gene-Rearrangement Data with Unequal Gene Content.	WADS	2003	DBLP DOI BibTeX RDF	gene-order data, whole-genome data, Hannenhalli-Pevzner theory, inversion distance, reversal distance, experimental assessment, lower bounds, Computational biology, edit distance, gene duplications, phylogenetic reconstruction, signed permutations
64	Kun-Ming Yu, Jiayi Zhou, Chun-Yuan Lin, Chuan Yi Tang	An Efficient Parallel Algorithm for Ultrametric Tree Construction Based on 3PR.	ISPA Workshops	2006	DBLP DOI BibTeX RDF	minimum ultrametric tree, parallel branch-and-bound algorithm, 3-point relationship, 4-point relationship, phylogenetic tree
60	Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente	Metrics for Phylogenetic Networks I: Generalizations of the Robinson-Foulds Metric.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	Trees, Graph algorithms, Biology and genetics
60	John Hawkins, Timothy L. Bailey	The Statistical Power of Phylogenetic Motif Models.	RECOMB	2008	DBLP DOI BibTeX RDF
60	Thomas M. Keane, Andrew J. Page, Thomas J. Naughton, Simon A. A. Travers, James O. McInerney	Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines.	Algorithmica	2006	DBLP DOI BibTeX RDF
60	Daniel Barker, Mark Pagel	Predicting functional gene-links from phylogenetic-statistical analyses of whole genomes.	CSB Workshops	2005	DBLP DOI BibTeX RDF
60	Nicholas D. Pattengale, Bernard M. E. Moret	Phylogenetic Postprocessing.	CSB Workshops	2005	DBLP DOI BibTeX RDF
60	Zhi-Zhong Chen, Tatsuie Tsukiji	Computing Bounded-Degree Phylogenetic Roots of Disconnected Graphs.	WG	2004	DBLP DOI BibTeX RDF
60	Patricia Buendia, Giri Narasimhan	MinPD: Distance-Based Phylogenetic Analysis and Recombination Detection of Serially-Sampled HIV Quasispecies.	CSB	2004	DBLP DOI BibTeX RDF
60	Luay Nakhleh, Daniel P. Miranker, François Barbançon, William H. Piel, Michael J. Donoghue	Requirements of Phylogenetic Databases.	BIBE	2003	DBLP DOI BibTeX RDF
60	Zhi-Zhong Chen, Tao Jiang 0001, Guo-Hui Lin	Computing Phylogenetic Roots with Bounded Degrees and Errors.	WADS	2001	DBLP DOI BibTeX RDF
58	Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller	Parsimony Score of Phylogenetic Networks: Hardness Results and a Linear-Time Heuristic.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	hardness and approximation, phylogenetic networks, Maximum parsimony, horizontal gene transfer
58	Sergey Bereg, Yuanyi Zhang	Phylogenetic Networks Based on the Molecular Clock Hypothesis.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF	molecular clock hypothesis, least-squares fit, Phylogenetic Networks
58	Michael Ott 0001, Jaroslaw Zola, Alexandros Stamatakis, Srinivas Aluru	Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L.	SC	2007	DBLP DOI BibTeX RDF	IBM BlueGene/L, RAxML, maximum likelihood, phylogenetic inference
58	Leon Poladian, Lars S. Jermiin	Multi-objective evolutionary algorithms and phylogenetic inference with multiple data sets.	Soft Comput.	2006	DBLP DOI BibTeX RDF	Evolutionary algorithms, Phylogenetic inference, Multiobjective optimisation
58	Guillaume Blin, Cédric Chauve, Guillaume Fertin	Genes Order and Phylogenetic Reconstruction: Application to gamma-Proteobacteria.	Comparative Genomics	2005	DBLP DOI BibTeX RDF	conserved intervals, ?-Proteobacteria, gene families, breakpoints, common intervals, Phylogenetic reconstruction
50	Frederick A. Matsen IV	Fourier Transform Inequalities for Phylogenetic Trees.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	Impact of VLSI on system design, Backup/recovery
50	Philippe Gambette, Vincent Berry, Christophe Paul	The Structure of Level-k Phylogenetic Networks.	CPM	2009	DBLP DOI BibTeX RDF
50	Sen Zhang, Jason Tsong-Li Wang	Discovering Frequent Agreement Subtrees from Phylogenetic Data.	IEEE Trans. Knowl. Data Eng.	2008	DBLP DOI BibTeX RDF	Data mining, Bioinformatics (genome or protein) databases
50	Guilherme Palermo Coelho, Ana Estela Antunes da Silva, Fernando J. Von Zuben	Evolving Phylogenetic Trees: A Multiobjective Approach.	BSB	2007	DBLP DOI BibTeX RDF
50	Warren A. Hunt Jr., Serita M. Nelesen	Phylogenetic trees in ACL2.	ACL2	2006	DBLP DOI BibTeX RDF	ACL2, phylogenetics
50	Roger A. Craig, Li Liao	Protein classification using transductive learning on phylogenetic profiles.	SAC	2006	DBLP DOI BibTeX RDF
50	Nguyen Bao Nguyen, C. Thach Nguyen, Wing-Kin Sung	Fast Algorithms for Computing the Tripartition-Based Distance Between Phylogenetic Networks.	ISAAC	2005	DBLP DOI BibTeX RDF
50	Sergey Bereg, Yuanyi Zhang	Phylogenetic Networks Based on the Molecular Clock Hypothesis.	BIBE	2005	DBLP DOI BibTeX RDF
50	Osamu Maruyama, Akiko Matsuda, Satoru Kuhara	Reconstructing Phylogenetic Trees of Prokaryote Genomes by Randomly Sampling Oligopeptides.	International Conference on Computational Science (2)	2005	DBLP DOI BibTeX RDF
50	Gabriel Valiente	A Fast Algorithmic Technique for Comparing Large Phylogenetic Trees.	SPIRE	2005	DBLP DOI BibTeX RDF
50	Yaw-Ling Lin, Tsan-sheng Hsu	Efficient Algorithms for Descendent Subtrees Comparison of Phylogenetic Trees with Applications to Co-evolutionary Classifications in Bacterial Genome.	ISAAC	2003	DBLP DOI BibTeX RDF
50	Adam C. Siepel, David Haussler	Combining phylogenetic and hidden Markov models in biosequence analysis.	RECOMB	2003	DBLP DOI BibTeX RDF	context-sensitive substitution, maximum likelihood
50	Mathieu Blanchette, Samson Kwong, Martin Tompa	An Empirical Comparison of Tools for Phylogenetic Footprinting.	BIBE	2003	DBLP DOI BibTeX RDF
50	Frédéric Guinand, Gilles Parmentier, Denis Trystram	Construction of Phylogenetic Trees on Parallel Clusters.	PPAM	2001	DBLP DOI BibTeX RDF
48	Magnus Bordewich, Olivier Gascuel, Katharina T. Huber, Vincent Moulton	Consistency of Topological Moves Based on the Balanced Minimum Evolution Principle of Phylogenetic Inference.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	subtree prune and regraft (SPR), BSPR algorithm, Nearest Neighbor Interchange (NNI), BNNI algorithm, balanced minimum evolution principle (BME), tree-length, quartet-distance, Robinson Foulds distance, safety radius, topological move, consistency, phylogenetic tree
48	Iyad A. Kanj, Luay Nakhleh, Ge Xia	The Compatibility of Binary Characters on Phylogenetic Networks: Complexity and Parameterized Algorithms.	Algorithmica	2008	DBLP DOI BibTeX RDF	Parameterized algorithms and complexity, Linguistics, Phylogenetic networks
48	Zhi-Zhong Chen	Approximation Algorithms for Bounded Degree Phylogenetic Roots.	Algorithmica	2008	DBLP DOI BibTeX RDF	Phylogenetic roots, Approximation algorithms, Randomized algorithms, Graph algorithms, Computational biology, Phylogenies
48	Bin Ma 0002, Lei Xin, Kaizhong Zhang	A new quartet approach for reconstructing phylogenetic trees: quartet joining method.	J. Comb. Optim.	2008	DBLP DOI BibTeX RDF	Quartet based method, Phylogenetic reconstruction, Neighbor joining
48	Tingting Zhou, Keith C. C. Chan, Zhenghua Wang	TopEVM: Using Co-occurrence and Topology Patterns of Enzymes in Metabolic Networks to Construct Phylogenetic Trees.	PRIB	2008	DBLP DOI BibTeX RDF	TopEVM, co-occurrence pattern, topology pattern, degree centrality, evolutionary distance, document clustering, metabolic network, phylogenetic analysis
48	Xiuwei Zhang, Maryam Zaheri, Bernard M. E. Moret	Using Phylogenetic Relationships to Improve the Inference of Transcriptional Regulatory Networks.	BMEI (1)	2008	DBLP DOI BibTeX RDF	phylogenetic relationships, maximum likelihood, dynamic Bayesian networks, regulatory networks
48	Zhihua Du, Zhen Ji	A New Algorithm for Reconstruction of Phylogenetic Tree.	AIRS	2008	DBLP DOI BibTeX RDF	DCM, divide-and-conquer, Phylogenetic tree
48	Magnus Bordewich, Charles Semple	Computing the Hybridization Number of Two Phylogenetic Trees Is Fixed-Parameter Tractable.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF	Rooted phylogenetic tree, reticulate evolution, agreement forest, subtree prune and regraft, hybridization network
48	Wan Nazmee Wan Zainon, Paul R. Calder	Visualising phylogenetic trees.	AUIC	2006	DBLP BibTeX RDF	interactive visualisation, bioinformatics, phylogenetic trees
48	William S. Kennedy, Guohui Lin	5-th Phylogenetic Root Construction for Strictly Chordal Graphs.	ISAAC	2005	DBLP DOI BibTeX RDF	phylogeny reconstruction, phylogenetic root, Steiner root, chordal, strictly chordal, Computational biology
48	Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier	A fast program for maximum likelihood-based inference of large phylogenetic trees.	SAC	2004	DBLP DOI BibTeX RDF	parallel & distributed computing, maximum likelihood, phylogenetic inference
47	Ling Qin, Jianli Luo, Zhimin Chen, Jing Guo, Ling Chen 0005, Yi Pan 0001	Phelogenetic Tree Construction using Self adaptive Ant Colony Algorithm.	IMSCCS (1)	2006	DBLP DOI BibTeX RDF
45	Nicholas D. Pattengale, Masoud Alipour, Olaf R. P. Bininda-Emonds, Bernard M. E. Moret, Alexandros Stamatakis	How Many Bootstrap Replicates Are Necessary?	RECOMB	2009	DBLP DOI BibTeX RDF	Support Value, Bootstopping, Bootstrap, Maximum Likelihood, Stopping Criterion, Phylogenetic Inference
45	Pingping Sun, Yanan Ma, Yazhuo Wei, Zhiqiang Ma 0003, Linying Lu, Ying Cui, Ping Huang	Application of Improved K-mean Clustering in Predicting Protein-Protein Interactions.	BMEI (1)	2008	DBLP DOI BibTeX RDF	improved K-mean clustering, phylogenetic profile, protein-protein interactions
45	David Burstein, Igor Ulitsky, Tamir Tuller, Benny Chor	Information Theoretic Approaches to Whole Genome Phylogenies.	RECOMB	2005	DBLP DOI BibTeX RDF	Phylogenomics, whole genome and proteom phylogenetic, tree reconstruction, Kullback-Leibler relative entropy, divergence, distance matrix
45	Andreas W. M. Dress, Daniel H. Huson	Constructing Splits Graphs.	IEEE ACM Trans. Comput. Biol. Bioinform.	2004	DBLP DOI BibTeX RDF	splits graphs, graph drawing, Phylogenetic networks
41	Kenneth Sundberg, Mark J. Clement, Quinn Snell	Visualizing Phylogenetic Treespace Using Cartographic Projections.	WABI	2009	DBLP DOI BibTeX RDF
41	Andreas Spillner 0001, Binh T. Nguyen 0002, Vincent Moulton	Computing Phylogenetic Diversity for Split Systems.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	Biology and genetics, Life and Medical Sciences
41	Leo van Iersel, Steven Kelk	Constructing the Simplest Possible Phylogenetic Network from Triplets.	ISAAC	2008	DBLP DOI BibTeX RDF
41	Ilan Gronau, Shlomo Moran, Sagi Snir	Fast and reliable reconstruction of phylogenetic trees with very short edges.	SODA	2008	DBLP BibTeX RDF
41	Zhanshan (Sam) Ma, Axel W. Krings	Survival Analysis Modeling of Phylogenetic and Coalescent Trees.	BMEI (1)	2008	DBLP DOI BibTeX RDF
41	Stefan Grünewald, Andreas Spillner 0001, Kristoffer Forslund, Vincent Moulton	Constructing Phylogenetic Supernetworks from Quartets.	WABI	2008	DBLP DOI BibTeX RDF
41	Feng Yue, Meng Zhang 0006, Jijun Tang	A Heuristic for Phylogenetic Reconstruction Using Transposition.	BIBE	2007	DBLP DOI BibTeX RDF
41	Julia Chifman, Sonja Petrovic	Toric Ideals of Phylogenetic Invariants for the General Group-Based Model on Claw Trees K 1, n .	AB	2007	DBLP DOI BibTeX RDF
41	Monther Tarawneh, Bing Bing Zhou, Penghao Wang, Albert Y. Zomaya	Investigation of Relationships among Excavate Taxa Using a New Quartet-Based Phylogenetic Analysis Method.	AINA Workshops (1)	2007	DBLP DOI BibTeX RDF
41	Juan Diego Trujillo, Carlos Cotta	An Evolutionary Approach to the Inference of Phylogenetic Networks.	PPSN	2006	DBLP DOI BibTeX RDF
41	Jiawei Luo, Xizhen Zhang	A Novel Method for Constructing Phylogenetic Tree Based on 3D Graphical Representation.	CIMCA/IAWTIC	2006	DBLP DOI BibTeX RDF
41	Daniel H. Huson, Mike A. Steel, Jim Whitfield	Reducing Distortion in Phylogenetic Networks.	WABI	2006	DBLP DOI BibTeX RDF
41	Sun-Yuan Hsieh	Linear-Time Algorithms for Two Subtree-Comparison Problems on Phylogenetic Trees with Different Species.	FSTTCS	2006	DBLP DOI BibTeX RDF
41	Trinh N. D. Huynh, Jesper Jansson 0001, Nguyen Bao Nguyen, Wing-Kin Sung	Constructing a Smallest Refining Galled Phylogenetic Network.	RECOMB	2005	DBLP DOI BibTeX RDF
41	Dan Gusfield, Vikas Bansal 0001	A Fundamental Decomposition Theory for Phylogenetic Networks and Incompatible Characters.	RECOMB	2005	DBLP DOI BibTeX RDF
41	Usman Roshan, Dennis R. Livesay, David La	Improved Phylogenetic Motif Detection Using Parsimony.	BIBE	2005	DBLP DOI BibTeX RDF
41	Sergey Bereg, Kathryn Bean	Constructing Phylogenetic Networks from Trees.	BIBE	2005	DBLP DOI BibTeX RDF
41	M. A. H. Zahid, Ankush Mittal, Ramesh Chandra Joshi	A Classification Based Approach for Root Unknown Phylogenetic Networks Under Constrained Recombination.	ICDCIT	2005	DBLP DOI BibTeX RDF
41	Ho-Leung Chan, Jesper Jansson 0001, Tak Wah Lam, Siu-Ming Yiu	Reconstructing an Ultrametric Galled Phylogenetic Network from a Distance Matrix.	MFCS	2005	DBLP DOI BibTeX RDF
41	Robert S. Boyer, Warren A. Hunt Jr., Serita M. Nelesen	A Compressed Format for Collections of Phylogenetic Trees and Improved Consensus Performance.	WABI	2005	DBLP DOI BibTeX RDF
41	Isabelle Bichindaritz, Stephen Potter	Knowledge Based Phylogenetic Classification Mining.	ICDM	2004	DBLP DOI BibTeX RDF
41	Bing Bing Zhou, Michael Till, Albert Y. Zomaya, Lars S. Jermiin	Parallel Implementation of Maximum Likelihood Methods for Phylogenetic Analysis.	IPDPS	2004	DBLP DOI BibTeX RDF
41	Daichi Shigemizu, Osamu Maruyama	Searching for Regulatory Elements of Alternative Splicing Events Using Phylogenetic Footprinting.	WABI	2004	DBLP DOI BibTeX RDF
41	Jesper Jansson 0001, Wing-Kin Sung	Inferring a Level-1 Phylogenetic Network from a Dense Set of Rooted Triplets.	COCOON	2004	DBLP DOI BibTeX RDF
41	Tatsuie Tsukiji, Zhi-Zhong Chen	Computing Phylogenetic Roots with Bounded Degrees and Errors Is Hard.	COCOON	2004	DBLP DOI BibTeX RDF
41	Gerton Lunter, István Miklós, Alexei J. Drummond, Jens Ledet Jensen, Jotun Hein	Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model.	WABI	2003	DBLP DOI BibTeX RDF
41	Huiyuan Shan, Katherine G. Herbert, William H. Piel, Dennis E. Shasha, Jason Tsong-Li Wang	A Structure-Based Search Engine for Phylogenetic Databases.	SSDBM	2002	DBLP DOI BibTeX RDF
41	Craig A. Stewart, David Hart, Donald K. Berry, Gary J. Olsen, Eric A. Wernert, William Fischer 0002	Parallel implementation and performance of fastDNAml: a program for maximum likelihood phylogenetic inference.	SC	2001	DBLP DOI BibTeX RDF	scalability, bioinformatics, maximum likelihood, parallel applications, phylogenetics
41	Daniel H. Huson, Kelly Ann Smith, Tandy J. Warnow	Estimating Large Distances in Phylogenetic Reconstruction.	WAE	1999	DBLP BibTeX RDF
41	Mark J. Clement, Quinn Snell, Glenn Judd, Michael Whiting	High Performance Phylogenetic Inference.	HPDC	1999	DBLP DOI BibTeX RDF
41	Joaquín Dopazo, Huaichun Wang, José María Carazo	A New Type of Unsupervised Growing Neural Network for Biological Sequence Classification That Adopts the Topology of a Phylogenetic Tree.	IWANN	1997	DBLP DOI BibTeX RDF
39	Paul Grouchy, Jekanthan Thangavelautham, Gabriele M. T. D'Eleuterio	An island model for high-dimensional genomes using phylogenetic speciation and species barcoding.	GECCO	2009	DBLP DOI BibTeX RDF	phylogenetic species concept, species barcoding, genetic algorithms, island model, parallel evolutionary algorithms, speciation
39	Philippe Gambette, Daniel H. Huson	Improved Layout of Phylogenetic Networks.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	algorithms, graph drawing, phylogenetics, phylogenetic networks
39	Jakub Koperwas, Krzysztof Walczak 0002	Phylogenetic Trees Dissimilarity Measure Based on Strict Frequent Splits Set and Its Application for Clustering.	RSKT	2008	DBLP DOI BibTeX RDF	Leaf-labelled trees, Frequent subsplits, Clustering, Phylogenetic trees
39	Waldo Cancino Ticona, Alexandre C. B. Delbem	A Multi-objective Evolutionary Approach for Phylogenetic Inference.	EMO	2007	DBLP DOI BibTeX RDF	Genetic Algorithms, Multi-Objective Optimization, Phylogenetic Inference
39	Nicholas Eriksson	Toric ideals of homogeneous phylogenetic models.	ISSAC	2004	DBLP DOI BibTeX RDF	Gröbner bases, parametric inference, phylogenetic invariants, toric ideals
39	Mathieu Blanchette	Algorithms for phylogenetic footprinting.	RECOMB	2001	DBLP DOI BibTeX RDF	phylogenetic footprinting, regulatory elements, algorithm, phylogeny, motif finding
38	Stefan Grünewald, Vincent Moulton	Maximum Parsimony for Tree Mixtures.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	Applications, Biology and genetics
38	Jie Zheng 0002, Igor B. Rogozin, Eugene V. Koonin, Teresa M. Przytycka	A Rigorous Analysis of the Pattern of Intron Conservation Supports the Coelomata Clade of Animals.	RECOMB-CG	2007	DBLP DOI BibTeX RDF
38	Xizhou Feng, Kirk W. Cameron, Carlos P. Sosa, Brian E. Smith	Building the Tree of Life on Terascale Systems.	IPDPS	2007	DBLP DOI BibTeX RDF
38	Sen Zhang, Katherine G. Herbert, Jason T. L. Wang, William H. Piel, David R. B. Stockwell	PhyloMiner: A Tool for Evolutionary Data Analysis.	SSDBM	2006	DBLP DOI BibTeX RDF