Search results for "prion"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
106	Mohd Shahir Shamsir, Zeti-Azura Mohamed-Hussein, Johan Sharif	Unravelling Prion Diseases Using Molecular Dynamics Simulations.	Asia International Conference on Modelling and Simulation	2008	DBLP DOI BibTeX RDF	prion, Creutzfeldt–Jakob, spongiform encephalopathy, molecular dynamics simulation
93	Igor B. Kuznetsov, Shelly Rackovsky	Identification of Non-Random Patterns in Structural and Mutational Data: the Case of Prion Protein.	CSB	2003	DBLP DOI BibTeX RDF
50	Paul Lemarre, Laurent Pujo-Menjouet, Suzanne S. Sindi	A unifying model for the propagation of prion proteins in yeast brings insight into the [PSI+] prion.	PLoS Comput. Biol.	2020	DBLP DOI BibTeX RDF
50	Nils Gehlenborg, Daehee Hwang, Inyoul Y. Lee, Hyuntae Yoo, David Baxter, Brianne Petritis, Rose Pitstick, Bruz Marzolf, Stephen J. DeArmond, George Carlson, Leroy Hood	The Prion Disease Database: a comprehensive transcriptome resource for systems biology research in prion diseases.	Database J. Biol. Databases Curation	2009	DBLP DOI BibTeX RDF
48	Tetsu Narumi, Yousuke Ohno, Noriaki Okimoto, Takahiro Koishi, Atsushi Suenaga, Noriyuki Futatsugi, Ryoko Yanai, Ryutaro Himeno, Shigenori Fujikawa, Makoto Taiji, Mitsuru Ikei	Gordon Bell finalists II - A 55 TFLOPS simulation of amyloid-forming peptides from yeast prion Sup35 with the special-purpose computer system MDGRAPE-3.	SC	2006	DBLP DOI BibTeX RDF
25	Zhangyang Chen, Xingqing Xiao, Li Yang, Cheng Lian, Shouhong Xu, Honglai Liu	Prion-like Aggregation of the Heptapeptide GNNQQNY into Amyloid Nanofiber Is Governed by Configuration Entropy.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
25	Luca Mollica, Gabriele Giachin	Recognition Mechanisms between a Nanobody and Disordered Epitopes of the Human Prion Protein: An Integrative Molecular Dynamics Study.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
25	Michael Bordonaro	Hypothesis: functional age and onset of autosomal dominant genetic prion disease.	Theory Biosci.	2023	DBLP DOI BibTeX RDF
25	Paola F. Antonietti, Francesca Bonizzoni, Mattia Corti, Agnese Dall'Olio	Discontinuous Galerkin for the heterodimer model of prion dynamics in Parkinson's disease.	CoRR	2023	DBLP DOI BibTeX RDF
25	Chisho Takeoka, Toshimasa Yamazaki, Yoshiyuki Kuroiwa, Kimihiro Fujino, Toshiaki Hirai, Hidehiro Mizusawa	Functional Connectivity and Small-World Networks in Prion Disease.	IEICE Trans. Inf. Syst.	2023	DBLP DOI BibTeX RDF
25	Mostafa Adimy, Louis Babin, Laurent Pujo-Menjouet	Neuron Scale Modeling of Prion Production with the Unfolded Protein Response.	SIAM J. Appl. Dyn. Syst.	2022	DBLP DOI BibTeX RDF
25	Huixia Li, Hongyong Zhao	Mathematical model of Alzheimer's disease with prion proteins interactions and treatment.	Appl. Math. Comput.	2022	DBLP DOI BibTeX RDF
25	Fabian Santiago, Suzanne Sindi	A structured model and likelihood approach to estimate yeast prion propagon replication rates and their asymmetric transmission.	PLoS Comput. Biol.	2022	DBLP DOI BibTeX RDF
25	Kui Xia, Xinpeng Li, Jingjing Xue, Damao Xun, Rongri Tan	The Effect of Ethanol on Mutant Human Prion Protein using Molecular Dynamics Simulations.	BIC	2022	DBLP DOI BibTeX RDF
25	Anastasiya Piven, Kseniya Piven, Jan Treur	An Adaptive Network Model for Aggregation and Prion-Like Propagation of α-synuclein in Parkinson's Disease.	BICA*AI	2022	DBLP DOI BibTeX RDF
25	Juan R. Coca, Hasier Eraña, Joaquín Castilla	Biosemiotics comprehension of PrP code and prion disease.	Biosyst.	2021	DBLP DOI BibTeX RDF
25	Rafat Alam, G. M. Sayedur Rahman, Nahid Hasan, Abu Sayeed Chowdhury	A De-Novo drug design and ADMET study to design small molecule stabilisers targeting mutant (V210I) human prion protein against familial Creutzfeldt-Jakob disease (fCJD).	Int. J. Comput. Biol. Drug Des.	2020	DBLP DOI BibTeX RDF
25	Luca Terruzzi, Giovanni Spagnolli, Alberto Boldrini, Jesús R. Requena, Emiliano Biasini, Pietro Faccioli	All-atom simulation of the HET-s prion replication.	PLoS Comput. Biol.	2020	DBLP DOI BibTeX RDF
25	Ye Wang	The Molecular Dynamics Study on the stability of Elk Prion Protein.	ICBBE	2020	DBLP DOI BibTeX RDF
25	Valentin Iglesias, Oscar Conchillo-Solé, Cristina Batlle, Salvador Ventura	AMYCO: evaluation of mutational impact on prion-like proteins aggregation propensity.	BMC Bioinform.	2019	DBLP DOI BibTeX RDF
25	Shuangyan Zhou, Yongchang Zhu, Xiaojun Yao, Huanxiang Liu	Carbon Nanoparticles Inhibit the Aggregation of Prion Protein as Revealed by Experiments and Atomistic Simulations.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
25	Gabriele Orlando, Daniele Raimondi, Francesco Tabaro, Francesco Codicè, Yves Moreau, Wim F. Vranken	Computational identification of prion-like RNA-binding proteins that form liquid phase-separated condensates.	Bioinform.	2019	DBLP DOI BibTeX RDF
25	Helen Nathalia Thompson, Claudia Elizabeth Thompson, Rafael A. Caceres, Laurent Emmanuel Dardenne, Paulo A. Netz, Hubert Stassen	Prion protein conversion triggered by acidic condition: a molecular dynamics study through different force fields.	J. Comput. Chem.	2018	DBLP DOI BibTeX RDF
25	Liane S. Canas, Benjamin C. Yvernault, Carole H. Sudre, Enrico De Vita, M. Jorge Cardoso, John S. Thornton, Frederik Barkhof, Sébastien Ourselin, Simon Mead, Marc Modat	Imaging biomarkers for the diagnosis of Prion disease.	Medical Imaging: Image Processing	2018	DBLP DOI BibTeX RDF
25	Lanlan Li, Wei Wei, Wen-Juan Jia 0002, Yongchang Zhu, Yan Zhang, Jiang-Huai Chen, Jiaqi Tian, Huanxiang Liu, Yong-Xing He, Xiaojun Yao	Discovery of small molecules binding to the normal conformation of prion by combining virtual screening and multiple biological activity evaluation methods.	J. Comput. Aided Mol. Des.	2017	DBLP DOI BibTeX RDF
25	William L. Miller, W. David Walter	CWDPRNP: a tool for cervid prion sequence analysis in program R.	Bioinform.	2017	DBLP DOI BibTeX RDF
25	Fayyaz ul Amir Afsar Minhas, Eric D. Ross, Asa Ben-Hur	Amino acid composition predicts prion activity.	PLoS Comput. Biol.	2017	DBLP DOI BibTeX RDF
25	Monique Chyba, Jean-Michel Coron, Yuriy Mileyko, Human Rezaei	Optimization of prion assemblies fragmentation.	CDC	2016	DBLP DOI BibTeX RDF
25	Rafael Zambrano, Oscar Conchillo-Solé, Valentin Iglesias, Ricard Illa, Frederic Rousseau 0001, Joost Schymkowitz, Raimon Sabate, Xavier Daura, Salvador Ventura	PrionW: a server to identify proteins containing glutamine/asparagine rich prion-like domains and their amyloid cores.	Nucleic Acids Res.	2015	DBLP DOI BibTeX RDF
25	Wiktor Jurkowski	Role of D278N mutation for stability of prion dimer and tetramer structure.	Bio Algorithms Med Syst.	2015	DBLP DOI BibTeX RDF
25	Raimon Sabate, Frederic Rousseau 0001, Joost Schymkowitz, Salvador Ventura	What Makes a Protein Sequence a Prion?	PLoS Comput. Biol.	2015	DBLP DOI BibTeX RDF
25	Peter Olofsson, Suzanne S. Sindi	A Crump-Mode-Jagers Branching Process Model of Prion Loss in Yeast.	J. Appl. Probab.	2014	DBLP DOI BibTeX RDF
25	Alex Lancaster, Andrew Nutter-Upham, Susan Lindquist, Oliver D. King	PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition.	Bioinform.	2014	DBLP DOI BibTeX RDF
25	Erwan Hingant, Pascaline Fontes, Maria Teresa Alvarez-Martinez, Jacques-Damien Arnaud, Jean-Pierre Liautard, Laurent Pujo-Menjouet	A Micellar On-Pathway Intermediate Step Explains the Kinetics of Prion Amyloid Formation.	PLoS Comput. Biol.	2014	DBLP DOI BibTeX RDF
25	Antoine Perasso, Ulrich Razafison	Asymptotic Behavior and Numerical Simulations for an Infection Load-Structured Epidemiological Model: Application to the Transmission of Prion Pathologies.	SIAM J. Appl. Math.	2014	DBLP DOI BibTeX RDF
25	Linan Xu, Naushaba Hasin, Manli Shen, Jianwei He, Youlin Xue, Xiaohong Zhou, Sarah Perrett, Youtao Song, Gary W. Jones	Using Steered Molecular Dynamics to Predict and Assess Hsp70 Substrate-Binding Domain Mutants that Alter Prion Propagation.	PLoS Comput. Biol.	2013	DBLP DOI BibTeX RDF
25	Julian Garrec, Ivano Tavernelli, Ursula Rothlisberger	Two Misfolding Routes for the Prion Protein around pH 4.5.	PLoS Comput. Biol.	2013	DBLP DOI BibTeX RDF
25	Tiziana Sonati, Regina R. Reimann, Jeppe Falsig, Pravas Kumar Baral, Tracy O'Connor, Simone Hornemann, Sine Yaganoglu, Bei Li, Uli S. Herrmann, Barbara Wieland, Mridula Swayampakula, Muhammad Hafizur Rahman, Dipankar Das, Nat Kav, Roland Riek, Pawel P. Liberski, Michael N. G. James, Adriano Aguzzi	The toxicity of antiprion antibodies is mediated by the flexible tail of the prion protein.	Nat.	2013	DBLP DOI BibTeX RDF
25	Jessica Nasica-Labouze, Normand Mousseau	Kinetics of Amyloid Aggregation: A Study of the GNNQQNY Prion Sequence.	PLoS Comput. Biol.	2012	DBLP DOI BibTeX RDF
25	Deena M. A. Gendoo, Paul M. Harrison	The Landscape of the Prion Protein's Structural Response to Mutation Revealed by Principal Component Analysis of Multiple NMR Ensembles.	PLoS Comput. Biol.	2012	DBLP DOI BibTeX RDF
25	Isaac Crespo, Kirsten Roomp, Wiktor Jurkowski, Hiroaki Kitano, Antonio del Sol	Gene regulatory network analysis supports inflammation as a key neurodegeneration process in prion disease.	BMC Syst. Biol.	2012	DBLP DOI BibTeX RDF
25	Francis Odeh, Trygve B. Leergaard, Jana Boy, Thorsten Schmidt, Olaf Riess, Jan G. Bjaalie	Atlas of transgenic Tet-Off Ca2+/calmodulin-dependent protein kinase II and prion protein promoter activity in the mouse brain.	NeuroImage	2011	DBLP DOI BibTeX RDF
25	Mattia Zampieri, Giuseppe Legname, Daniel Segrè, Claudio Altafini	A system-level approach for deciphering the transcriptional response to prion infection.	Bioinform.	2011	DBLP DOI BibTeX RDF
25	Jiapu Zhang, David Yang Gao, John Yearwood	A novel canonical dual computational approach for prion AGAAAAGA amyloid fibril molecular modeling	CoRR	2011	DBLP BibTeX RDF
25	Pierre Gabriel	The shape of the polymerization rate in the prion equation.	Math. Comput. Model.	2011	DBLP DOI BibTeX RDF
25	Jessica Nasica-Labouze, Massimiliano Meli, Philippe Derreumaux, Giorgio Colombo 0001, Normand Mousseau	A Multiscale Approach to Characterize the Early Aggregation Steps of the Amyloid-Forming Peptide GNNQQNY from the Yeast Prion Sup-35.	PLoS Comput. Biol.	2011	DBLP DOI BibTeX RDF
25	Henryk Faas, Walker S. Jackson, Andrew W. Borkowski, Xinhe Wang, Jiyan Ma, Susan Lindquist, Alan Jasanoff	Context-dependent perturbation of neural systems in transgenic mice expressing a cytosolic prion protein.	NeuroImage	2010	DBLP DOI BibTeX RDF
25	Jiapu Zhang	Effective hybrid evolutionary computational algorithms for global optimization and applied to construct prion AGAAAAGA fibril models	CoRR	2010	DBLP BibTeX RDF
25	Wen-Quan Zou, Jue Yuan	Prion protein and human cognition.	IEEE ICCI	2010	DBLP DOI BibTeX RDF
25	Luciana Morogan	Prion neural system: Modeling the binding affinities between neurons of a network.	CISIM	2010	DBLP DOI BibTeX RDF
25	Takeshi Ishikawa, Takakazu Ishikura, Kazuo Kuwata	Theoretical study of the prion protein based on the fragment molecular orbital method.	J. Comput. Chem.	2009	DBLP DOI BibTeX RDF
25	Reema Taneja, Kennon C. Shelton, Ajit Sadana	Fractal binding and dissociation kinetics of prion proteins on biosensor surfaces.	Appl. Math. Comput.	2009	DBLP DOI BibTeX RDF
25	Mattia Zampieri, Giuseppe Legname, Claudio Altafini	Investigating the Conformational Stability of Prion Strains through a Kinetic Replication Model.	PLoS Comput. Biol.	2009	DBLP DOI BibTeX RDF
25	Feng Cui, Kriti Mukhopadhyay, Won-Bin Young, Robert L. Jernigan, Zhijun Wu	Refinement of under-determined loops of Human Prion Protein by database-derived distance constraints.	Int. J. Data Min. Bioinform.	2009	DBLP DOI BibTeX RDF
25	Mattia Zampieri, Giuseppe Legname, Claudio Altafini	Prion kinetic replication models and strain-dependent stability (to denaturation).	ECC	2009	DBLP DOI BibTeX RDF
25	Jernej Zidar, Elizabeta T. Pirc, Milan Hodoscek, Peter Bukovec	Copper(II) Ion Binding to Cellular Prion Protein.	J. Chem. Inf. Model.	2008	DBLP DOI BibTeX RDF
25	Mukesh Doble	Mathematical Analysis of EEG Signals of Patients with Prion Dsease.	BIOCOMP	2008	DBLP BibTeX RDF
25	Elías Sanz-Casado, Carlos Suárez-Balseiro, Isabel Iribarren-Maestro, M. Ramírez-de Santa Pau, J. de Pedro-Cuesta	Bibliometric mapping of scientific research on prion diseases, 1973-2002.	Inf. Process. Manag.	2007	DBLP DOI BibTeX RDF
25	Meredith L. Greer, Pauline van den Driessche, Lin Wang 0018, Glenn F. Webb	Effects of General Incidence and Polymer Joining on Nucleated Polymerization in a Model of Prion Proliferation.	SIAM J. Appl. Math.	2007	DBLP DOI BibTeX RDF
25	Jan Ziegler, Stephan Schwarzinger	Genetic algorithms as a tool for helix design - computational and experimental studies on prion protein helix 1.	J. Comput. Aided Mol. Des.	2006	DBLP DOI BibTeX RDF
25	Jana Boy, Trygve B. Leergaard, Thorsten Schmidt, Francis Odeh, Ulrike Bichelmeier, Silke Nuber, Carsten Holzmann, Andreas Wree, Stanley B. Prusiner, Hermann Bujard, Olaf Riess, Jan G. Bjaalie	Expression mapping of tetracycline-responsive prion protein promoter: Digital atlasing for generating cell-specific disease models.	NeuroImage	2006	DBLP DOI BibTeX RDF
25	Marvin Carmack	Chirality of the Disulfide in the Prion Proteins.	J. Chem. Inf. Model.	2004	DBLP DOI BibTeX RDF
25	Emmanuelle Cotto	Caractérisation moléculaire de la protéine prion de poisson-zèbre et expression génique au cours du développement.		2004	RDF
25	Masakazu Sekijima, Chie Motono, Satoshi Yamasaki, Kiyotoshi Kaneko, Yutaka Akiyama	Molecular Dynamics Simulation of Prion Protein by Large Scale Cluster Computing.	ISHPC	2003	DBLP DOI BibTeX RDF
25	Dan Rujescu, Eva M. Meisenzahl, Ina Giegling, Andre Kirner, Gerda Leinsinger, Ulrich Hegerl, Klaus Hahn, Hans-Jürgen Möller	Methionine Homozygosity at Codon 129 in the Prion Protein Is Associated with White Matter Reduction and Enlargement of CSF Compartments in Healthy Volunteers and Schizophrenic Patients.	NeuroImage	2002	DBLP DOI BibTeX RDF
23	Lee Hood	Systems medicine, transformational technologies and the emergence of predictive, personalized, preventive and participatory (P4) medicine.	SC	2009	DBLP DOI BibTeX RDF
23	Marius George Linguraru, Nicholas Ayache, Éric Bardinet, Miguel Ángel González Ballester, Damien Galanaud, Stéphane Haïk, Baptiste Faucheux, J.-J. Hauw, Patrick Cozzone, Didier Dormont, Jean-Philippe Brandel	Differentiation of sCJD and vCJD forms by automated analysis of basal ganglia intensity distribution in multisequence MRI of the brain-definition and evaluation of new MRI-based ratios.	IEEE Trans. Medical Imaging	2006	DBLP DOI BibTeX RDF
23	Fedja Hadzic, Tharam S. Dillon, Amandeep S. Sidhu, Elizabeth Chang 0001, Henry Tan	Mining Substructures in Protein Data.	ICDM Workshops	2006	DBLP DOI BibTeX RDF
23	Susan Lindquist, Ernest Fraenkel, Tiago Outeiro, Aaron Gitler, Julie Su, Anil Cashikar, Smitha Jagadish	Yeast Cells as a Discovery Platform for Neurodegenerative Disease.	RECOMB	2005	DBLP DOI BibTeX RDF
23	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001	Ontological Foundation for Protein Data Models.	OTM Workshops	2005	DBLP DOI BibTeX RDF
23	G. Sampath, James TenEyck	Non-occurring and rare quads in PDB and translated introns from XPro with possible applications in nanostructure design.	CSB Workshops	2005	DBLP DOI BibTeX RDF
23	Michela Taufer, Thomas Stricker, Gerard Roos, Peter Güntert	On the Migration of the Scientific Code Dyana from SMPs to Clusters of PCs and on to the Grid.	CCGRID	2002	DBLP DOI BibTeX RDF	performance evaluation and modeling, computation-intensive applications, widely distributed supercomputing, migration of scientific codes, software engineering, grid architectures