Search results for "profile-HMM"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
82	Lifang Liu 0001, Hongwei Huo, Bao-Shu Wang	A Novel Optimization of Profile HMM by a Hybrid Genetic Algorithm.	IWANN	2005	DBLP DOI BibTeX RDF
53	Yanni Sun, Jeremy Buhler	Designing Patterns and Profiles for Faster HMM Search.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	bioinformatics databases, sequence similarity search, hidden Markov models, Biology and genetics
52	Zhijian Zhou, Daoliang Li, Li Li, Zetian Fu	Construction and Application Based on Compressing Depiction in Profile Hidden Markov Model.	CCTA	2007	DBLP DOI BibTeX RDF	Bioinformatics, Multiple sequence alignment, Profile HMM
50	Wei-bang Chen, Chengcui Zhang, Xin Chen 0001	Biological Sequence Clustering and Classification with a Hybrid Method and Dynamic Programming.	AINA Workshops (1)	2007	DBLP DOI BibTeX RDF	hybrid clustering, hiearchical clustering, classification, dynamic programming, prediction, k-means, partition clustering, Sequence clustering, profile HMM
29	Jeffrey Huang, Shijun Li	Mining p53 Binding Sites Using Profile Hidden Markov Model.	ITCC (1)	2005	DBLP DOI BibTeX RDF
26	Driss Choujaa, Naranker Dulay	Routine classification through sequence alignment.	ACM Multimedia	2009	DBLP DOI BibTeX RDF	human behaviour analysis, mobile phone, sequence alignment, profile-HMM
26	Mihaela Pertea, Steven Salzberg	Using Protein Domains to Improve the Accuracy of Ab Initio Gene Finding.	WABI	2007	DBLP DOI BibTeX RDF	Pfam, GHMM, ab intio gene finding, protein domain, profile HMM
24	Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt	High Performance Database Searching with HMMer on FPGAs.	IPDPS	2007	DBLP DOI BibTeX RDF
19	Semidán Robaina-Estévez, José M. González	Pynteny: a Python package to perform synteny-aware, profile HMM-based searches in sequence databases.	J. Open Source Softw.	2023	DBLP DOI BibTeX RDF
19	Frédéric Lemoine 0002, Luc Blassel, Jakub Voznica, Olivier Gascuel	COVID-Align: accurate online alignment of hCoV-19 genomes using a profile HMM.	Bioinform.	2021	DBLP DOI BibTeX RDF
19	Takuya Aramaki, Romain Blanc-Mathieu, Hisashi Endo, Koichi Ohkubo, Minoru Kanehisa, Susumu Goto, Hiroyuki Ogata	KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold.	Bioinform.	2020	DBLP DOI BibTeX RDF
19	Xiaolei Liu 0001, Zhongliu Zhuo, Xiaojiang Du, Xiaosong Zhang 0001, Qingxin Zhu, Mohsen Guizani	Adversarial attacks against profile HMM website fingerprinting detection model.	Cogn. Syst. Res.	2019	DBLP DOI BibTeX RDF
19	Alexander Shlemov, Anton I. Korobeynikov	PathRacer: Racing Profile HMM Paths on Assembly Graph.	AlCoB	2019	DBLP DOI BibTeX RDF
19	David M. Curran, John S. Gilleard, James Wasmuth	Figmop: a profile HMM to identify genes and bypass troublesome gene models in draft genomes.	Bioinform.	2014	DBLP DOI BibTeX RDF
19	Yuan Zhang, Yanni Sun	MetaDomain: A Profile HMM-Based Protein Domain Classification Tool for Short Sequences.	Pacific Symposium on Biocomputing	2012	DBLP BibTeX RDF
19	Sean R. Eddy	Accelerated Profile HMM Searches.	PLoS Comput. Biol.	2011	DBLP DOI BibTeX RDF
19	Jan Grau, Daniel Arend, Ivo Grosse, Artemis G. Hatzigeorgiou, Jens Keilwagen, Manolis Maragkakis, Claus Weinholdt, Stefan Posch	Predicting miRNA targets utilizing an Extended Profile HMM.	GCB	2010	DBLP BibTeX RDF
19	Khaled Benkrid, Panagiotis Velentzas, Server Kasap	A High Performance Reconfigurable Core for Motif Searching Using Profile HMM.	AHS	2008	DBLP DOI BibTeX RDF
19	Yanni Sun, Jeremy Buhler	Designing patterns for profile HMM search.	Bioinform.	2007	DBLP DOI BibTeX RDF
19	Arpith C. Jacob, Joseph M. Lancaster, Jeremy D. Buhler, Roger D. Chamberlain	Preliminary results in accelerating profile HMM search on FPGAs.	IPDPS	2007	DBLP DOI BibTeX RDF
19	Maria Stepanova, Feng Lin 0002, Valerie C.-L. Lin	A Profile HMM for Recognition of Hormone Response Elements.	PRIB	2006	DBLP DOI BibTeX RDF
19	Markus Wistrand, Erik L. L. Sonnhammer	Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER.	BMC Bioinform.	2005	DBLP DOI BibTeX RDF
19	Thomas Plötz, Gernot A. Fink	Feature Extraction for Improved Profile HMM based Biological Sequence Analysis.	ICPR (2)	2004	DBLP DOI BibTeX RDF
15	Anton Bezuglov, Juan E. Vargas	Simulated Annealing Algorithm with Biased Neighborhood Distribution for Training Profile Models.	ISMIS	2006	DBLP DOI BibTeX RDF
11	Taisuke Sato, Yoshitaka Kameya, Kenichi Kurihara	Variational Bayes via propositionalized probability computation in PRISM.	Ann. Math. Artif. Intell.	2008	DBLP DOI BibTeX RDF	Mathematics Subject Classifications (2000) 68T37, 62F15
11	Heinz Stockinger, Marco Pagni, Lorenzo Cerutti, Laurent Falquet	Grid Approach to Embarrassingly Parallel CPU-Intensive Bioinformatics Problems.	e-Science	2006	DBLP DOI BibTeX RDF