Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
101 | Rune B. Lyngsø |
Complexity of Pseudoknot Prediction in Simple Models. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICALP ![In: Automata, Languages and Programming: 31st International Colloquium, ICALP 2004, Turku, Finland, July 12-16, 2004. Proceedings, pp. 919-931, 2004, Springer, 3-540-22849-7. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
|
82 | Sahar Al Seesi, Sanguthevar Rajasekaran, Reda A. Ammar |
RNA Pseudoknot Folding through Inference and Identification Using TAGRNA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BICoB ![In: Bioinformatics and Computational Biology, First International Conference, BICoB 2009, New Orleans, LA, USA, April 8-10, 2009. Proceedings, pp. 90-101, 2009, Springer, 978-3-642-00726-2. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
82 | Sahar Al Seesi, Sanguthevar Rajasekaran, Reda A. Ammar |
Pseudoknot Identification through Learning TAGRNA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PRIB ![In: Pattern Recognition in Bioinformatics, Third IAPR International Conference, PRIB 2008, Melbourne, Australia, October 15-17, 2008. Proceedings, pp. 132-143, 2008, Springer, 978-3-540-88434-7. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
82 | Chunmei Liu, Yinglei Song, Russell L. Malmberg, Liming Cai |
Profiling and Searching for RNA Pseudoknot Structures in Genomes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Trans. Comp. Sys. Biology ![In: Transactions on Computational Systems Biology II, pp. 37-47, 2005, Springer, 3-540-29401-5. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
|
82 | Chunmei Liu, Yinglei Song, Russell L. Malmberg, Liming Cai |
Profiling and Searching for RNA Pseudoknot Structures in Genomes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
International Conference on Computational Science (2) ![In: Computational Science - ICCS 2005, 5th International Conference, Atlanta, GA, USA, May 22-25, 2005, Proceedings, Part II, pp. 968-975, 2005, Springer, 3-540-26043-9. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
|
82 | Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara |
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CSB ![In: 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2004, Stanford, CA, USA, August 16-19, 2004, pp. 290-299, 2004, IEEE Computer Society, 0-7695-2194-0. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
|
76 | Xiaolu Huang, Hesham H. Ali |
Reducing Folding Scenario Candidates in Pseudoknots Detection Using PLMM_DPSS Algorithm Integrated With Energy Filters. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBE ![In: Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2007, October 14-17, 2007, Harvard Medical School, Boston, MA, USA, pp. 1299-1303, 2007, IEEE Computer Society, 978-1-4244-1509-0. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
76 | Yujin Lee, Wootaek Kim, Kyungsook Han |
New Representation and Algorithm for Drawing RNA Structure with Pseudoknots. ![Search on Bibsonomy](Pics/bibsonomy.png) |
DaWaK ![In: Data Warehousing and Knowledge Discovery, 4th International Conference, DaWaK 2002, Aix-en-Provence, France, September 4-6, 2002, Proceedings, pp. 191-201, 2002, Springer, 3-540-44123-9. The full citation details ...](Pics/full.jpeg) |
2002 |
DBLP DOI BibTeX RDF |
|
67 | Hosna Jabbari, Anne Condon, Ana Pop, Cristina Pop 0004, Yinglei Zhao |
HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: Algorithms in Bioinformatics, 7th International Workshop, WABI 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings, pp. 323-334, 2007, Springer, 978-3-540-74125-1. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
Secondary Structure Prediction, Folding Pathways, Hierarchical Folding, RNA, Pseudoknot |
48 | Chunmei Liu, Yinglei Song, Louis W. Shapiro |
RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: Algorithms in Bioinformatics, 7th International Workshop, WABI 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings, pp. 310-322, 2007, Springer, 978-3-540-74125-1. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
path decomposition, maximum weighted independent set, free energy, pseudoknot, RNA secondary structure prediction |
44 | Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu |
Structural Alignment of RNA with Complex Pseudoknot Structure. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: Algorithms in Bioinformatics, 9th International Workshop, WABI 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings, pp. 403-414, 2009, Springer, 978-3-642-04240-9. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
pseudoknots, Structural alignment, non-coding RNA |
44 | Patricia A. Evans |
Finding Common RNA Pseudoknot Structures in Polynomial Time. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CPM ![In: Combinatorial Pattern Matching, 17th Annual Symposium, CPM 2006, Barcelona, Spain, July 5-7, 2006, Proceedings, pp. 223-232, 2006, Springer, 3-540-35455-7. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
44 | Xuezheng Fu, Hao Wang, William L. Harrison, Robert W. Harrison |
RNA Pseudoknot Prediction Using Term Rewriting. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBE ![In: Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 19-21 October 2005, Minneapolis, MN, USA, pp. 169-176, 2005, IEEE Computer Society, 0-7695-2476-1. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
|
44 | Dongkyu Lee, Kyungsook Han |
A Genetic Algorithm for Predicting RNA Pseudoknot Structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
International Conference on Computational Science ![In: Computational Science - ICCS 2003, International Conference, Melbourne, Australia and St. Petersburg, Russia, June 2-4, 2003. Proceedings, Part III, pp. 130-139, 2003, Springer, 3-540-40196-2. The full citation details ...](Pics/full.jpeg) |
2003 |
DBLP DOI BibTeX RDF |
|
44 | Wootaek Kim, Yujin Lee, Kyungsook Han |
Visualization of RNA Pseudoknot Structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
VECPAR ![In: High Performance Computing for Computational Science - VECPAR 2002, 5th International Conference, Porto, Portugal, June 26-28, 2002, Selected Papers and Invited Talks, pp. 181-196, 2002, Springer, 3-540-00852-7. The full citation details ...](Pics/full.jpeg) |
2002 |
DBLP DOI BibTeX RDF |
|
38 | Qingfeng Chen, Yi-Ping Phoebe Chen |
Discovery of Structural and Functional Features in RNA Pseudoknots. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE Trans. Knowl. Data Eng. ![In: IEEE Trans. Knowl. Data Eng. 21(7), pp. 974-984, 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
38 | Mathias Möhl, Sebastian Will, Rolf Backofen |
Lifting Prediction to Alignment of RNA Pseudoknots. ![Search on Bibsonomy](Pics/bibsonomy.png) |
RECOMB ![In: Research in Computational Molecular Biology, 13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings, pp. 285-301, 2009, Springer, 978-3-642-02007-0. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
38 | Wenduo Zhou, David K. Lowenthal |
A Parallel, Out-of-Core Algorithm for RNA Secondary Structure Prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICPP ![In: 2006 International Conference on Parallel Processing (ICPP 2006), 14-18 August 2006, Columbus, Ohio, USA, pp. 74-81, 2006, IEEE Computer Society, 0-7695-2636-5. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
29 | Hengwu Li |
Approximation algorithm and scheme for RNA structure prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICIS ![In: Proceedings of the 2nd International Conference on Interaction Sciences: Information Technology, Culture and Human (ICIS 2009), Seoul, Korea, 24-26 November 2009, pp. 1364-1367, 2009, ACM, 978-1-60558-710-3. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
approximation algorithm, approximation scheme, RNA structure, pseudoknot |
29 | Yinglei Song, Jizhen Zhao, Chunmei Liu, Kan Liu, Russell L. Malmberg, Liming Cai |
RNA Structural Homology Search with a Succinct Stochastic Grammar Model. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Sci. Technol. ![In: J. Comput. Sci. Technol. 20(4), pp. 454-464, 2005. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
RNA structural homology search, stochastic context-free grammar (SCFG), structure-sequence alignment, pseudoknot |
26 | Mateo Gray, Sebastian Will, Hosna Jabbari |
SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle consideration. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Algorithms Mol. Biol. ![In: Algorithms Mol. Biol. 19(1), pp. 9, December 2024. The full citation details ...](Pics/full.jpeg) |
2024 |
DBLP DOI BibTeX RDF |
|
26 | Luke Trinity, Ian Wark, Lance Lansing, Hosna Jabbari, Ulrike Stege |
Shapify: Paths to SARS-CoV-2 frameshifting pseudoknot. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PLoS Comput. Biol. ![In: PLoS Comput. Biol. 19(2), February 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
26 | Mateo Gray, Sebastian Will, Hosna Jabbari |
SparseRNAFolD: Sparse RNA Pseudoknot-Free Folding Including Dangles. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: 23rd International Workshop on Algorithms in Bioinformatics, WABI 2023, September 4-6, 2023, Houston, TX, USA, pp. 19:1-19:18, 2023, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 978-3-95977-294-5. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
26 | Evangelos Makris, Angelos Kolaitis, Christos Andrikos, Vrettos Moulos, Panayiotis Tsanakas, Christos Pavlatos |
An Intelligent Grammar-Based Platform for RNA H-type Pseudoknot Prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
AIAI Workshops ![In: Artificial Intelligence Applications and Innovations. AIAI 2022 IFIP WG 12.5 International Workshops - MHDW 2022, 5G-PINE 2022, AIBMG 2022, ML@HC 2022, and AIBEI 2022, Hersonissos, Crete, Greece, June 17-20, 2022, Proceedings, pp. 174-186, 2022, Springer, 978-3-031-08340-2. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
26 | Dustyn Eggers, Christian Höner zu Siederdissen, Peter F. Stadler |
Accuracy of RNA Structure Prediction Depends on the Pseudoknot Grammar. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BSB ![In: Advances in Bioinformatics and Computational Biology - 15th Brazilian Symposium on Bioinformatics, BSB 2022, Buzios, Brazil, September 21-23, 2022, Proceedings, pp. 20-31, 2022, Springer, 978-3-031-21174-4. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
26 | Sara Ibrahim Omar, Meng Zhao, Rohith Vedhthaanth Sekar, Sahar Arbabi Moghadam, Jack A. Tuszynski, Michael T. Woodside |
Modeling the structure of the frameshift-stimulatory pseudoknot in SARS-CoV-2 reveals multiple possible conformers. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PLoS Comput. Biol. ![In: PLoS Comput. Biol. 17(1), 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
26 | Luke Trinity, Lance Lansing, Hosna Jabbari, Ulrike Stege |
SARS-CoV-2 Ribosomal Frameshifting Pseudoknot: Detection of Inter-viral Structural Similarity. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICHI ![In: 9th IEEE International Conference on Healthcare Informatics, ICHI 2021, Victoria, BC, Canada, August 9-12, 2021, pp. 451-460, 2021, IEEE, 978-1-6654-0132-6. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
26 | Tomasz Zok, Jan Badura, Sylwester Swat, Kacper Figurski, Mariusz Popenda, Maciej Antczak |
New models and algorithms for RNA pseudoknot order assignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Int. J. Appl. Math. Comput. Sci. ![In: Int. J. Appl. Math. Comput. Sci. 30(2), pp. 315-324, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
|
26 | Hosna Jabbari, Ian Wark, Carlo Montemagno, Sebastian Will |
Knotty: efficient and accurate prediction of complex RNA pseudoknot structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 34(22), pp. 3849-3856, 2018. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
|
26 | Da-Jung Cho, Yo-Sub Han, Timothy Ng 0001, Kai Salomaa |
Pseudoknot-generating operation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Theor. Comput. Sci. ![In: Theor. Comput. Sci. 696, pp. 52-64, 2017. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
26 | Hosna Jabbari, Ian Wark, Carlo Montemagno, Sebastian Will |
Sparsification Enables Predicting Kissing Hairpin Pseudoknot Structures of Long RNAs in Practice. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: 17th International Workshop on Algorithms in Bioinformatics, WABI 2017, August 21-23, 2017, Boston, MA, USA, pp. 12:1-12:13, 2017, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 978-3-95977-050-7. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
26 | Da-Jung Cho, Yo-Sub Han, Timothy Ng 0001, Kai Salomaa |
Pseudoknot-Generating Operation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SOFSEM ![In: SOFSEM 2016: Theory and Practice of Computer Science - 42nd International Conference on Current Trends in Theory and Practice of Computer Science, Harrachov, Czech Republic, January 23-28, 2016, Proceedings, pp. 241-252, 2016, Springer, 978-3-662-49191-1. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
|
26 | Robert Kleinkauf, Torsten Houwaart, Rolf Backofen, Martin Mann |
antaRNA - Multi-objective inverse folding of pseudoknot RNA using ant-colony optimization. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 16, pp. 389:1-389:7, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
26 | Yang Song, Lei Hua, Bruce A. Shapiro, Jason Tsong-Li Wang |
Effective alignment of RNA pseudoknot structures using partition function posterior log-odds scores. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 16, pp. 39:1-39:15, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
26 | William B. Langdon, Mark Harman |
Grow and Graft a Better CUDA pknotsRG for RNA Pseudoknot Free Energy Calculation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
GECCO (Companion) ![In: Genetic and Evolutionary Computation Conference, GECCO 2015, Madrid, Spain, July 11-15, 2015, Companion Material Proceedings, pp. 805-810, 2015, ACM, 978-1-4503-3488-4. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
26 | Fenix W. D. Huang, Markus E. Nebel, Christian M. Reidys |
Uniform generation of RNA pseudoknot structures with genus filtration ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/1304.7397, 2013. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP BibTeX RDF |
|
26 | Jikai Lei, Prapaporn Techa-angkoon, Yanni Sun, Rujira Achawanantakun |
ChainKnot: a comparative H-type pseudoknot prediction tool using multiple ab initio folding tools. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BCB ![In: ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics. ACM-BCB 2013, Washington, DC, USA, September 22-25, 2013, pp. 535, 2013, ACM, 978-1-4503-2434-2. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP DOI BibTeX RDF |
|
26 | Markus E. Nebel, Frank Weinberg |
Algebraic and Combinatorial Properties of Common RNA Pseudoknot Classes with Applications. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Biol. ![In: J. Comput. Biol. 19(10), pp. 1134-1150, 2012. The full citation details ...](Pics/full.jpeg) |
2012 |
DBLP DOI BibTeX RDF |
|
26 | Qingfeng Chen, Yi-Ping Phoebe Chen |
Function Annotation for Pseudoknot Using Structure Similarity. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE ACM Trans. Comput. Biol. Bioinform. ![In: IEEE ACM Trans. Comput. Biol. Bioinform. 8(6), pp. 1535-1544, 2011. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
|
26 | Patricia A. Evans |
Finding common RNA pseudoknot structures in polynomial time. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Discrete Algorithms ![In: J. Discrete Algorithms 9(4), pp. 335-343, 2011. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
|
26 | Markus E. Nebel, Christian M. Reidys, Rita R. Wang |
Loops in Canonical RNA Pseudoknot Structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Biol. ![In: J. Comput. Biol. 18(12), pp. 1793-1806, 2011. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
|
26 | Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Brenda W. Y. Cheung, Siu-Ming Yiu |
Structural Alignment of RNA with Complex Pseudoknot Structure. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Biol. ![In: J. Comput. Biol. 18(1), pp. 97-108, 2011. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
|
26 | Thomas K. F. Wong, Hui-Ting Yu, Bay-Yuan Hsu, Tak Wah Lam, Wing-Kai Hon, Siu-Ming Yiu |
Algorithms for pseudoknot classification. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BCB ![In: ACM International Conference on Bioinformatics, Computational Biology and Biomedicine, BCB' 11, Chicago, IL, USA - July 31 - August 03, 2011, pp. 484-486, 2011, ACM, 978-1-4503-0796-3. The full citation details ...](Pics/full.jpeg) |
2011 |
DBLP DOI BibTeX RDF |
|
26 | James Z. M. Gao, Linda Y. M. Li, Christian M. Reidys |
Inverse folding of RNA pseudoknot structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Algorithms Mol. Biol. ![In: Algorithms Mol. Biol. 5, pp. 27, 2010. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
|
26 | Emma Yu Jin, Christian M. Reidys |
RNA pseudoknot structures with arc-length >=3 and stack-length >=sigma. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Discret. Appl. Math. ![In: Discret. Appl. Math. 158(1), pp. 25-36, 2010. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
|
26 | Christian M. Reidys, Rita R. Wang |
Shapes of RNA Pseudoknot Structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Biol. ![In: J. Comput. Biol. 17(11), pp. 1575-1590, 2010. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
|
26 | Thomas K. F. Wong, Siu-Ming Yiu |
Prediction of Minimum Free Energy Structure for Simple Non-standard Pseudoknot. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIOSTEC (Selected Papers) ![In: Biomedical Engineering Systems and Technologies - Third International Joint Conference, BIOSTEC 2010, Valencia, Spain, January 20-23, 2010, Revised Selected Papers, pp. 345-355, 2010, Springer, 978-3-642-18471-0. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
|
26 | Thomas K. F. Wong, Siu-Ming Yiu |
Structure Prediction of Simple Non-standard Pseudoknot. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIOINFORMATICS ![In: BIOINFORMATICS 2010 - Proceedings of the First International Conference on Bioinformatics, Valencia, Spain, January 20-23, 2010, pp. 33-38, 2010, INSTICC Press, 978-989-674-019-1. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP BibTeX RDF |
|
26 | Emma Yu Jin, Christian M. Reidys |
Combinatorial design of pseudoknot RNA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Adv. Appl. Math. ![In: Adv. Appl. Math. 42(2), pp. 135-151, 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
26 | Fenix W. D. Huang, Linda Y. M. Li, Christian M. Reidys |
Sequence-structure relations of pseudoknot RNA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 10(S-1), 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
26 | Lila Kari, Shinnosuke Seki |
On pseudoknot-bordered words and their properties. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Syst. Sci. ![In: J. Comput. Syst. Sci. 75(2), pp. 113-121, 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
26 | Fenix W. D. Huang, Wade W. J. Peng, Christian M. Reidys |
Folding 3-Noncrossing RNA Pseudoknot Structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Biol. ![In: J. Comput. Biol. 16(11), pp. 1549-1575, 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
26 | Kay C. Wiese, Andrew Hendriks |
RNA pseudoknot prediction via an evolutionary algorithm. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE Congress on Evolutionary Computation ![In: Proceedings of the IEEE Congress on Evolutionary Computation, CEC 2009, Trondheim, Norway, 18-21 May, 2009, pp. 270-276, 2009, IEEE, 978-1-4244-2958-5. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
26 | Mathias Möhl |
Dynamic programming based RNA pseudoknot alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
|
2009 |
RDF |
|
26 | Zhibin Huang, Yong Wu, Joseph Robertson, Liang Feng, Russell L. Malmberg, Liming Cai |
Fast and accurate search for non-coding RNA pseudoknot structures in genomes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 24(20), pp. 2281-2287, 2008. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
26 | Xuezheng Fu, Hao Wang, Robert W. Harrison, William L. Harrison |
A rule-based approach for RNA pseudoknot prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Int. J. Data Min. Bioinform. ![In: Int. J. Data Min. Bioinform. 2(1), pp. 78-93, 2008. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
26 | Hillary S. W. Han, Christian M. Reidys |
Pseudoknot RNA Structures with Arc-Length >= 4. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Biol. ![In: J. Comput. Biol. 15(9), pp. 1195-1208, 2008. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
26 | Gang Ma, Christian M. Reidys |
Canonical RNA Pseudoknot Structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Biol. ![In: J. Comput. Biol. 15(10), pp. 1257-1273, 2008. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
26 | Jens Reeder, Peter Steffen, Robert Giegerich |
pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 35(Web-Server-Issue), pp. 320-324, 2007. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
26 | Lila Kari, Shinnosuke Seki |
Towards the Sequence Design Preventing Pseudoknot Formation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IWNC ![In: Natural Computing - 2nd International Workshop on Natural Computing, Nagoya, Japan, December 2007, Proceedings, pp. 101-110, 2007, Springer, 978-4-431-88980-9. The full citation details ...](Pics/full.jpeg) |
2007 |
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26 | Yuki Kato, Hiroyuki Seki, Tadao Kasami |
Stochastic Multiple Context-Free Grammar for RNA Pseudoknot Modeling. ![Search on Bibsonomy](Pics/bibsonomy.png) |
TAG ![In: Proceedings of the Eighth International Workshop on Tree Adjoining Grammar and Related Formalisms, TAG 2006, Sydney, Australia, July 15-16, 2006, pp. 57-64, 2006, Association for Computational Linguistics, 1-932432-85-X. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP BibTeX RDF |
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26 | Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara |
Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 21(11), pp. 2611-2617, 2005. The full citation details ...](Pics/full.jpeg) |
2005 |
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26 | Jens Reeder, Robert Giegerich |
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 5, pp. 104, 2004. The full citation details ...](Pics/full.jpeg) |
2004 |
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26 | Rune B. Lyngsø, Christian N. S. Pedersen |
RNA Pseudoknot Prediction in Energy-Based Models. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Biol. ![In: J. Comput. Biol. 7(3-4), pp. 409-427, 2000. The full citation details ...](Pics/full.jpeg) |
2000 |
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26 | Pieter H. Hartel, Marc Feeley, Martin Helmut Alt, Lennart Augustsson, Peter Baumann, Marcel Beemster, Emmanuel Chailloux, Christine H. Flood, Wolfgang Grieskamp, John H. G. van Groningen, Kevin Hammond, Bogumil Hausman, Melody Y. Ivory, Richard E. Jones, Jasper Kamperman, Peter Lee 0001, Xavier Leroy, Rafael Dueire Lins, Sandra Loosemore, Niklas Röjemo, Manuel Serrano, Jean-Pierre Talpin, Jon Thackray, Stephen Thomas, Pum Walters, Pierre Weis, Peter Wentworth |
Benchmarking Implementations of Functional Languages with 'Pseudoknot', a Float-Intensive Benchmark. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Funct. Program. ![In: J. Funct. Program. 6(4), pp. 621-655, 1996. The full citation details ...](Pics/full.jpeg) |
1996 |
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26 | Claude Philippe, Lionel Bénard, Claude Portier, E. Westhof, Bernard Ehresmann, Chantal Ehresmann |
Molecular dissection of the pseudoknot governing the translational regulation of Escherichia coli ribosomal protein S15. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 23(1), pp. 18-28, 1995. The full citation details ...](Pics/full.jpeg) |
1995 |
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26 | Jih-Hsiang Chen, Shu-Yun Le, Jacob V. Maizel |
A procedure for RNA pseudoknot prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Comput. Appl. Biosci. ![In: Comput. Appl. Biosci. 8(3), pp. 243-248, 1992. The full citation details ...](Pics/full.jpeg) |
1992 |
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19 | Minghui Jiang 0001, Pedro J. Tejada, Ramoni O. Lasisi, Shanhong Cheng, D. Scott Fechser |
K-Partite RNA Secondary Structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: Algorithms in Bioinformatics, 9th International Workshop, WABI 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings, pp. 157-168, 2009, Springer, 978-3-642-04240-9. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
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19 | Herbert H. Tsang, Kay C. Wiese |
SARNA-Predict-pk: Predicting RNA secondary structures including pseudoknots. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CIBCB ![In: Proceedings of the 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2008, Sun Valley Resort, Sun Valley, Idaho, USA, September 15-17, 2008, pp. 1-8, 2008, IEEE, 978-1-4244-1778-0. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
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19 | Xiang Chen, Simin He 0001, Dongbo Bu, Runsheng Chen, Wen Gao 0001 |
A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBE ![In: Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2007, October 14-17, 2007, Harvard Medical School, Boston, MA, USA, pp. 411-417, 2007, IEEE Computer Society, 978-1-4244-1509-0. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
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19 | Oyun-Erdene Namsrai, Kwang Su Jung, Sunshin Kim, Keun Ho Ryu |
RNA Secondary Structure Prediction with Simple Pseudoknots Based on Dynamic Programming. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICIC (3) ![In: Computational Intelligence and Bioinformatics, International Conference on Intelligent Computing, ICIC 2006, Kunming, China, August 16-19, 2006. Proceedings, Part III, pp. 303-311, 2006, Springer, 3-540-37277-6. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
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19 | Markus Bauer 0001, Gunnar W. Klau, Knut Reinert |
Multiple Structural RNA Alignment with Lagrangian Relaxation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: Algorithms in Bioinformatics, 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings, pp. 303-314, 2005, Springer, 3-540-29008-7. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
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19 | Fariza Tahi, Stefan Engelen, Mireille Régnier |
A Fast Algorithm for NA Secondary Structure Prediction Including Pseudoknots. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBE ![In: 3rd IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2003), 10-12 March 2003, Bethesda, MD, USA, pp. 11-17, 2003, IEEE Computer Society, 0-7695-1907-5. The full citation details ...](Pics/full.jpeg) |
2003 |
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19 | Yuh-Jyh Hu |
Mining A Set of Coregulated RNA Sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICDM ![In: Proceedings of the 2002 IEEE International Conference on Data Mining (ICDM 2002), 9-12 December 2002, Maebashi City, Japan, pp. 625-628, 2002, IEEE Computer Society, 0-7695-1754-4. The full citation details ...](Pics/full.jpeg) |
2002 |
DBLP DOI BibTeX RDF |
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