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Searching for phrase psi-blast (changed automatically) with no syntactic query expansion in all metadata.

Publication years (Num. hits)
1999-2005 (16) 2006-2008 (19) 2009-2023 (13)
Publication types (Num. hits)
article(21) inproceedings(26) phdthesis(1)
Venues (Conferences, Journals, ...)
Bioinform.(9) Nucleic Acids Res.(4) RECOMB(4) BMC Bioinform.(3) BIRD(2) ISBRA(2) BDCAT(1) BIBE(1) CIBCB(1) CoRR(1) CSB(1) DTMBIO(1) EvoBIO(1) FPGA(1) FSKD (2)(1) German Conference on Bioinform...(1) More (+10 of total 29)
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The graphs summarize 26 occurrences of 21 keywords

Results
Found 48 publication records. Showing 48 according to the selection in the facets
Hits ? Authors Title Venue Year Link Author keywords
136Yuheng Li, Mario Lauria, Ralf Bundschuh Suboptimal Alignments Improve the Detection of Weak Homologs in Sequence Database Searches. Search on Bibsonomy BIBE The full citation details ... 2005 DBLP  DOI  BibTeX  RDF PSI-BLAST, suboptimal alignment, sequence alignment, hybrid algorithm, forward-backward algorithm
113Sarah A. Teichmann, Cyrus Chothia, George M. Church, Jong-Chan Park PDB_ISL: an intermediate sequence library for protein structure assignment. Search on Bibsonomy RECOMB The full citation details ... 2000 DBLP  DOI  BibTeX  RDF PDB_ISL, PSI-BLAST, structure assignment, homology
93Rui Kuang, Eugene Ie, Ke Wang, Kai Wang, Mahira Siddiqi, Yoav Freund, Christina S. Leslie Profile-Based String Kernels for Remote Homology Detection and Motif Extraction. Search on Bibsonomy CSB The full citation details ... 2004 DBLP  DOI  BibTeX  RDF protein motifs, support vector machine, kernels, protein classification
76Server Kasap, Khaled Benkrid, Ying Liu 0003 A high performance fpga-based implementation of position specific iterated blast. Search on Bibsonomy FPGA The full citation details ... 2009 DBLP  DOI  BibTeX  RDF psi-blast, fpga, blast, handel c
75Seon-Kyung Woo, Chang-Beom Park, Seong-Whan Lee Protein Secondary Structure Prediction Using Sequence Profile and Conserved Domain Profile. Search on Bibsonomy ICIC (2) The full citation details ... 2005 DBLP  DOI  BibTeX  RDF
70Yuheng Li, Mario Lauria, Ralf Bundschuh Using Hybrid Alignment for Iterative Sequence Database Searches. Search on Bibsonomy IPDPS The full citation details ... 2003 DBLP  DOI  BibTeX  RDF
70Golan Yona, Michael Levitt A unified sequence-structure classification of protein sequences: combining sequence and structure in a map of the protein space. Search on Bibsonomy RECOMB The full citation details ... 2000 DBLP  DOI  BibTeX  RDF
52Fumikazu Konishi, Akihiko Konagaya The Architectural Design of High-Throughput BLAST Services on OBIGrid. Search on Bibsonomy LSGRID The full citation details ... 2004 DBLP  DOI  BibTeX  RDF
46Ankit Agrawal 0001, Volker Brendel, Xiaoqiu Huang 0001 Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences. Search on Bibsonomy ISBRA The full citation details ... 2008 DBLP  DOI  BibTeX  RDF Database statistical significance, Pairwise local alignment, Pairwise statistical significance, Homologs
46Minh Ngoc Nguyen 0002, Jagath C. Rajapakse, Kaibo Duan Amino Acid Features for Prediction of Protein-Protein Interface Residues with Support Vector Machines. Search on Bibsonomy EvoBIO The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
46Eugene Ie, Jason Weston, William Stafford Noble, Christina S. Leslie Multi-class protein fold recognition using adaptive codes. Search on Bibsonomy ICML The full citation details ... 2005 DBLP  DOI  BibTeX  RDF
46Xiaopeng Jin, Qing Liao 0001, Hang Wei, Jun Zhang, Bin Liu 0014 SMI-BLAST: a novel supervised search framework based on PSI-BLAST for protein remote homology detection. Search on Bibsonomy Bioinform. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
46Marianne M. Lee, Michael K. Chan, Ralf Bundschuh SIB-BLAST: a web server for improved delineation of true and false positives in PSI-BLAST searches. Search on Bibsonomy Nucleic Acids Res. The full citation details ... 2009 DBLP  DOI  BibTeX  RDF
46Jeffrey D. Grant, Roland L. Dunbrack Jr., Frank J. Manion, Michael F. Ochs BeoBLAST: distributed BLAST and PSI-BLAST on a Beowulf cluster. Search on Bibsonomy Bioinform. The full citation details ... 2002 DBLP  DOI  BibTeX  RDF
33Ankit Agrawal 0001, Xiaoqiu Huang 0001 Pairwise statistical significance of local sequence alignment using multiple parameter sets. Search on Bibsonomy DTMBIO The full citation details ... 2008 DBLP  DOI  BibTeX  RDF database statistical significance, pairwise statistical significance, sequence alignment, homologs, parameter set
32Issar Arab EPSAPG: A Pipeline Combining MMseqs2 and PSI-BLAST to Quickly Generate Extensive Protein Sequence Alignment Profiles. Search on Bibsonomy CoRR The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
32Issar Arab EPSAPG: A Pipeline Combining MMseqs2 and PSI-BLAST to Quickly Generate Extensive Protein Sequence Alignment Profiles. Search on Bibsonomy BDCAT The full citation details ... 2023 DBLP  DOI  BibTeX  RDF
32Xiaopeng Jin, Qing Liao 0001, Bin Liu 0014 S2L-PSIBLAST: a supervised two-layer search framework based on PSI-BLAST for protein remote homology detection. Search on Bibsonomy Bioinform. The full citation details ... 2021 DBLP  DOI  BibTeX  RDF
32Toshiyuki Oda, Kyungtaek Lim, Kentaro Tomii Simple adjustment of the sequence weight algorithm remarkably enhances PSI-BLAST performance. Search on Bibsonomy BMC Bioinform. The full citation details ... 2017 DBLP  DOI  BibTeX  RDF
32Henrique de Assis Lopes Ribeiro Desenvolvimento de um serviço de análise de sequências utilizando um modelo baseado em atributos de resultados de PSI-BLAST. Search on Bibsonomy 2013   RDF
32Yuheng Li, Nicholas Chia, Mario Lauria, Ralf Bundschuh A performance enhanced PSI-BLAST based on hybrid alignment. Search on Bibsonomy Bioinform. The full citation details ... 2011 DBLP  DOI  BibTeX  RDF
32Bong-Hyun Kim, Qian Cong, Nick V. Grishin HangOut: generating clean PSI-BLAST profiles for domains with long insertions. Search on Bibsonomy Bioinform. The full citation details ... 2010 DBLP  DOI  BibTeX  RDF
32Mats Aspnäs, Kimmo Mattila, Kristoffer Osowski, Jan Westerholm Code Optimization of the Subroutine to Remove Near Identical Matches in the Sequence Database Homology Search Tool PSI-BLAST. Search on Bibsonomy J. Comput. Biol. The full citation details ... 2010 DBLP  DOI  BibTeX  RDF
32Ankit Agrawal 0001, Xiaoqiu Huang 0001 PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance. Search on Bibsonomy Bioinform. The full citation details ... 2009 DBLP  DOI  BibTeX  RDF
32Marianne M. Lee, Michael K. Chan, Ralf Bundschuh Simple is beautiful: a straightforward approach to improve the delineation of true and false positives in PSI-BLAST searches. Search on Bibsonomy Bioinform. The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
32Dariusz Przybylski, Burkhard Rost Powerful fusion: PSI-BLAST and consensus sequences. Search on Bibsonomy Bioinform. The full citation details ... 2008 DBLP  DOI  BibTeX  RDF
32Jiangning Song, Kevin Burrage, Zheng Yuan, Thomas Huber Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information. Search on Bibsonomy BMC Bioinform. The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
32Rana Bhadra, Sankaran Sandhya, K. R. Abhinandan, Saikat Chakrabarti 0001, Ramanathan Sowdhamini, Narayanaswamy Srinivasan Cascade PSI-BLAST web server: a remote homology search tool for relating protein domains. Search on Bibsonomy Nucleic Acids Res. The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
32Jian Guo 0002, Xian Pu, Yuanlie Lin, Howard Leung Protein Subcellular Localization Based on Psi-blast and Machine Learning. Search on Bibsonomy J. Bioinform. Comput. Biol. The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
32Mindaugas Margelevicius, Ceslovas Venclovas PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability. Search on Bibsonomy BMC Bioinform. The full citation details ... 2005 DBLP  DOI  BibTeX  RDF
32Dan Xie, Ao Li 0001, Minghui Wang, Zhewen Fan, Huanqing Feng LOCSVMPSI: a web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST. Search on Bibsonomy Nucleic Acids Res. The full citation details ... 2005 DBLP  DOI  BibTeX  RDF
32Manoj Bhasin, G. P. S. Raghava ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST. Search on Bibsonomy Nucleic Acids Res. The full citation details ... 2004 DBLP  DOI  BibTeX  RDF
32Alejandro A. Schäffer, Yuri I. Wolf, Chris P. Ponting, Eugene V. Koonin, L. Aravind, Stephen F. Altschul IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices. Search on Bibsonomy Bioinform. The full citation details ... 1999 DBLP  DOI  BibTeX  RDF
32Arne Müller, Robert M. MacCallum, Michael J. E. Sternberg Genome annotation with PSI-BLAST: Benchmark and application. Search on Bibsonomy German Conference on Bioinformatics The full citation details ... 1999 DBLP  BibTeX  RDF
23Feng Zhao, Jian Peng 0001, Joe DeBartolo, Karl F. Freed, Tobin R. Sosnick, Jinbo Xu A Probabilistic Graphical Model for Ab Initio Folding. Search on Bibsonomy RECOMB The full citation details ... 2009 DBLP  DOI  BibTeX  RDF ab initio folding, conditional random fields (CRFs), directional statistics, fragment assembly, protein structure prediction, lattice model
23Man-Wai Mak, Jian Guo 0002, Sun-Yuan Kung PairProSVM: Protein Subcellular Localization Based on Local Pairwise Profile Alignment and SVM. Search on Bibsonomy IEEE ACM Trans. Comput. Biol. Bioinform. The full citation details ... 2008 DBLP  DOI  BibTeX  RDF profile alignment, Mercer condition, Support Vector Machines, Kernel Methods, Subcellular localization
23Keith Marsolo, Srinivasan Parthasarathy 0001 On the use of structure and sequence-based features for protein classification and retrieval. Search on Bibsonomy Knowl. Inf. Syst. The full citation details ... 2008 DBLP  DOI  BibTeX  RDF Protein indexing, Protein retrieval, Sequence and structure-based protein representations, Bioinformatics
23Bin Liu 0014, Lei Lin 0001, Xiaolong Wang 0001, Qiwen Dong, Xuan Wang 0002 A Discriminative Method for Protein Remote Homology Detection Based on N-nary Profiles. Search on Bibsonomy BIRD The full citation details ... 2008 DBLP  DOI  BibTeX  RDF remote homology, N-nary profiles, chi-square algorithm, latent semantic analysis
23Qiwen Dong, Lei Lin 0001, Xiaolong Wang 0001 Protein Remote Homology Detection Based on Binary Profiles. Search on Bibsonomy BIRD The full citation details ... 2007 DBLP  DOI  BibTeX  RDF remote homology detection, binary profile, latent semantic analysis
23Gulsah Altun, Hae-Jin Hu, Stefan Gremalschi, Robert W. Harrison, Yi Pan 0001 A Feature Selection Algorithm Based on Graph Theory and Random Forests for Protein Secondary Structure Prediction. Search on Bibsonomy ISBRA The full citation details ... 2007 DBLP  DOI  BibTeX  RDF feature selection, clique, random forests, protein secondary structure prediction
23Feng Shi, Qiujian Chen, Xiao-hui Niu Functional Similarity Analyzing of Protein Sequences with Empirical Mode Decomposition. Search on Bibsonomy FSKD (2) The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
23Jyh-Yeong Chang, Jia-Jie Shyu, Yi-Xiang Shi Fuzzy K-Nearest Neighbor Classifier to Predict Protein Solvent Accessibility. Search on Bibsonomy ICONIP (2) The full citation details ... 2007 DBLP  DOI  BibTeX  RDF
23Euna Jeong, Satoru Miyano A Weighted Profile Based Method for Protein-RNA Interacting Residue Prediction. Search on Bibsonomy Trans. Comp. Sys. Biology The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
23Keith Marsolo, Srinivasan Parthasarathy 0001 On the Use of Structure and Sequence-Based Features for Protein Classification and Retrieval. Search on Bibsonomy ICDM The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
23Seung-Yeon Kim, Jaehyun Sim, Julian Lee Fuzzy k-Nearest Neighbor Method for Protein Secondary Structure Prediction and Its Parallel Implementation. Search on Bibsonomy ICIC (3) The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
23Minh Ngoc Nguyen 0002, Jagath C. Rajapakse Protein-Protein Interface Residue Prediction with SVM Using Evolutionary Profiles and Accessible Surface Areas. Search on Bibsonomy CIBCB The full citation details ... 2006 DBLP  DOI  BibTeX  RDF
23Li Liao, William Stafford Noble Combining pairwise sequence similarity and support vector machines for remote protein homology detection. Search on Bibsonomy RECOMB The full citation details ... 2002 DBLP  DOI  BibTeX  RDF
23Andreas Karwath, Ross D. King An Automated ILP Server in the Field of Bioinformatics. Search on Bibsonomy ILP The full citation details ... 2001 DBLP  DOI  BibTeX  RDF
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