Search results for "rearrangements"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
101	Assaf Avihoo, Nir Dromi, Danny Barash	Fine-Grain Matrix Graph Representation for Predicting Mutations Leading to Conformational Rearrangements in Small RNAs.	CSB	2004	DBLP DOI BibTeX RDF
84	Hadas Birin, Zohar Gal-Or, Isaac Elias, Tamir Tuller	Inferring Models of Rearrangements, Recombinations, and Horizontal Transfers by the Minimum Evolution Criterion.	WABI	2007	DBLP DOI BibTeX RDF	minimum evolution, genome rearrangements, recombinations, Phylogenetic network, horizontal gene transfer
84	Denis Bertrand, Olivier Gascuel	Topological Rearrangements and Local Search Method for Tandem Duplication Trees.	IEEE ACM Trans. Comput. Biol. Bioinform.	2005	DBLP DOI BibTeX RDF	Tandem duplication trees, topological rearrangements, minimum evolution, Zinc finger genes, local search, phylogeny, parsimony
74	Max A. Alekseyev	Multi-break Rearrangements: From Circular to Linear Genomes.	RECOMB-CG	2007	DBLP DOI BibTeX RDF
74	Sridhar Hannenhalli, Pavel A. Pevzner	Towards a Computational Theory of Genome Rearrangements.	Computer Science Today	1995	DBLP DOI BibTeX RDF
64	Pavel A. Pevzner, Glenn Tesler	Transforming men into mice: the Nadeau-Taylor chromosomal breakage model revisited.	RECOMB	2003	DBLP DOI BibTeX RDF	breakpoint re-use, evolution, genome rearrangements
61	Evgeny Ivanko	Fast Approximate Search in Strings with Rearrangements.	IEEE ICCI	2006	DBLP DOI BibTeX RDF
61	Denis Bertrand, Olivier Gascuel	Topological Rearrangements and Local Search Method for Tandem Duplication Trees.	WABI	2004	DBLP DOI BibTeX RDF
61	Funda Ergün, S. Muthukrishnan 0001, Süleyman Cenk Sahinalp	Comparing Sequences with Segment Rearrangements.	FSTTCS	2003	DBLP DOI BibTeX RDF
50	David Sankoff, Phil Trinh	Chromosomal breakpoint re-use in the inference of genome sequence rearrangement.	RECOMB	2004	DBLP DOI BibTeX RDF	Hannenhalli-Pevzner algorithm, synteny blocks, evolution, inversion, comparative genomics, breakpoints, rearrangements
47	Michal Ozery-Flato, Ron Shamir	Rearrangements in Genomes with Centromeres Part I: Translocations.	RECOMB	2007	DBLP DOI BibTeX RDF
47	Frank K. Hwang, Wen-Dar Lin	The Number of Rearrangements in a 3-stage Clos Network Using an Auxiliary Switch.	COCOON	1998	DBLP DOI BibTeX RDF
41	Pijus Simonaitis	Weighted Genome Rearrangements. (Scénarios évolutifs pondérés de réarrangements génomiques).		2020	RDF
41	Annelyse Thévenin	Aspects algorithmiques des réarrangements génomiques : duplications et ordres partiels. (Algorithmic Aspects of Genome Rearrangements: Duplications and Partial Orders).		2009	RDF
41	Claire Lemaitre	Réarrangements chromosomiques dans les génomes de mammifères : caractérisation des points de cassure. (Chromosomal rearrangements in mammalian genomes : characterising the breakpoints).		2008	RDF
40	Ali Bashir, Qing Lu, Dennis Carson, Benjamin J. Raphael, Yu-Tsueng Liu, Vineet Bafna	Optimizing PCR Assays for DNA Based Cancer Diagnostics.	RECOMB	2009	DBLP DOI BibTeX RDF
40	Swapnoneel Roy, Ashok Kumar Thakur	Towards Construction of Optimal Strip-Exchanging Moves.	BIBE	2007	DBLP DOI BibTeX RDF
40	Martin Bader, Enno Ohlebusch	Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions.	RECOMB	2006	DBLP DOI BibTeX RDF
40	Rogier J. P. van Berlo, Lodewyk F. A. Wessels, S. D. C. Martes, Marcel J. T. Reinders	Identifying Orthologs: Cycle Splitting on the Breakpoint Graph.	CSB Workshops	2005	DBLP DOI BibTeX RDF
37	Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier	Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	perfect sorting, sex chromosomes, evolution, genome rearrangements, sorting by reversals, common intervals, signed permutations
37	Isaac Elias, Tzvika Hartman	A 1.375-Approximation Algorithm for Sorting by Transpositions.	IEEE ACM Trans. Comput. Biol. Bioinform.	2006	DBLP DOI BibTeX RDF	sorting permutations by transpositions, Computational biology, genome rearrangements
37	Yi-Fei Shen, Guo-Liang Chen 0001	Parallel Algorithm for Computing Reversal Distance.	PDCAT	2005	DBLP DOI BibTeX RDF	reversal distance, parallel algorithms, computational biology, genome rearrangements, sequence comparison
37	Adam C. Siepel	An algorithm to enumerate all sorting reversals.	RECOMB	2002	DBLP DOI BibTeX RDF	genome rearrangements, sorting by reversals
37	Vinod Anupam, Shaul Dar, Ted Leibfried, Eric Petajan	Research report: DataSpace: 3-D visualizations of large databases.	INFOVIS	1995	DBLP DOI BibTeX RDF	interactive 3D visualization, large database analysis, display space, information panels, 3D graph layout, continuous navigation facilities, selective rearrangements, image merging, 3D graphic operations, query step, rendering step, layout step, query processing, data analysis, transparency, data visualisation, very large databases, large databases, computer displays, DataSpace, image comparison, performance issues
34	Daniel B. Goodman, Noah Ollikainen, Chris Sholley	Baculovirus Phylogeny Based on Genome Rearrangements.	RECOMB-CG	2007	DBLP DOI BibTeX RDF
34	Chunfang Zheng, David Sankoff	Genome rearrangements with partially ordered chromosomes.	J. Comb. Optim.	2006	DBLP DOI BibTeX RDF
34	Anne Bergeron, Julia Mixtacki, Jens Stoye	A Unifying View of Genome Rearrangements.	WABI	2006	DBLP DOI BibTeX RDF
34	Jijun Tang, Bernard M. E. Moret	Linear Programming for Phylogenetic Reconstruction Based on Gene Rearrangements.	CPM	2005	DBLP DOI BibTeX RDF
34	Fei He 0001, William N. N. Hung, Xiaoyu Song, Ming Gu 0001, Jiaguang Sun 0001	Segmented channel routing with pin rearrangements via satisfiability.	ISCAS (6)	2005	DBLP DOI BibTeX RDF
34	Chunfang Zheng, David Sankoff	Genome Rearrangements with Partially Ordered Chromosomes.	COCOON	2005	DBLP DOI BibTeX RDF
34	Janaína S. de Sousa, Lalinka de C. T. Gomes, George Barreto Bezerra, Leandro Nunes de Castro, Fernando J. Von Zuben	An Immune-Evolutionary Algorithm for Multiple Rearrangements of Gene Expression Data.	Genet. Program. Evolvable Mach.	2004	DBLP DOI BibTeX RDF	clustering, evolutionary algorithms, artificial immune systems, microarray, gene expression
34	Maria Emília Telles Walter, Luiz Reginaldo A. F. Curado, Adilton G. Oliveira	Working on the Problem of Sorting by Transpositions on Genome Rearrangements.	CPM	2003	DBLP DOI BibTeX RDF
27	Anthony Labarre	Edit Distances and Factorisations of Even Permutations.	ESA	2008	DBLP DOI BibTeX RDF
27	Max A. Alekseyev, Pavel A. Pevzner	Colored de Bruijn Graphs and the Genome Halving Problem.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF	Genome duplication, genome halving, breakpoint graph, reversal, genome rearrangement, de Bruijn graph
27	William Arndt, Jijun Tang	Improving Inversion Median Computation Using Commuting Reversals and Cycle Information.	RECOMB-CG	2007	DBLP DOI BibTeX RDF
27	Poompat Saengudomlert, Eytan H. Modiano, Robert G. Gallager	On-line routing and wavelength assignment for dynamic traffic in WDM ring and torus networks.	IEEE/ACM Trans. Netw.	2006	DBLP DOI BibTeX RDF	graph theory, routing and wavelength assignment, WDM networks
27	Michal Ozery-Flato, Ron Shamir	Sorting by Translocations Via Reversals Theory.	Comparative Genomics	2006	DBLP DOI BibTeX RDF
27	Poompat Saengudomlert, Eytan H. Modiano, Robert G. Gallager	Dynamic wavelength assignment for WDM all-optical tree networks.	IEEE/ACM Trans. Netw.	2005	DBLP DOI BibTeX RDF	graph theory, resource management, optical networks, wavelength assignment, network reconfiguration
27	Carole Knibbe, Guillaume Beslon, Virginie Lefort, F. Chaudier, Jean-Michel Fayard	Self-adaptation of Genome Size in Artificial Organisms.	ECAL	2005	DBLP DOI BibTeX RDF
27	Christian Scheideler	How to spread adversarial nodes?: rotate!	STOC	2005	DBLP DOI BibTeX RDF	join-leave attacks, random mixing, proactive security
27	Michael A. Erdmann	Protein similarity from knot theory and geometric convolution.	RECOMB	2004	DBLP DOI BibTeX RDF	writhing, homotopy, protein structure, homology, robot motion planning, knot theory
27	S. Muthukrishnan 0001, Süleyman Cenk Sahinalp	Simple and Practical Sequence Nearest Neighbors with Block Operations.	CPM	2002	DBLP DOI BibTeX RDF
27	Sridhar Hannenhalli, Pavel A. Pevzner	Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals.	J. ACM	1999	DBLP DOI BibTeX RDF	computational biology, genetics
27	Debasis Mitra 0001	Some Aspects of Hierarchical Memory Systems.	J. ACM	1974	DBLP DOI BibTeX RDF
24	Qian Zhu 0002, Zaky Adam, Vicky Choi, David Sankoff	Generalized Gene Adjacencies, Graph Bandwidth, and Clusters in Yeast Evolution.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	graph bandwidth, Saccharomyces cerevisiae, Candida glabrata, Ashbya gossypii, Kluyveromyces waltii, Kluyveromyces lactis, dynamic programming, evolution, phylogeny, Comparative genomics, genome rearrangements, gene clusters, yeast
24	Chunfang Zheng, Qian Zhu 0002, David Sankoff	Removing Noise and Ambiguities from Comparative Maps in Rearrangement Analysis.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF	rice, sorghum, synteny blocks, genome rearrangements, Maximum Weight Clique
24	Yoan Diekmann, Marie-France Sagot, Eric Tannier	Evolution under Reversals: Parsimony and Conservation of Common Intervals.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF	perfect sorting, Computational biology, genome rearrangements, sorting by reversals, common intervals, signed permutations
24	Anthony Labarre	New Bounds and Tractable Instances for the Transposition Distance.	IEEE ACM Trans. Comput. Biol. Bioinform.	2006	DBLP DOI BibTeX RDF	sorting by transpositions, permutations, Genome rearrangements
24	Sridhar Hannenhalli, Pavel A. Pevzner	Transforming Men into Mice (Polynomial Algorithm for Genomic Distance Problem).	FOCS	1995	DBLP DOI BibTeX RDF	evolution (biological), duality (mathematics), genomic distance problem, human-mouse evolution, multi chromosomal genomes, duality theorem, computable parameters, combinatorial properties, parsimonious rearrangement scenarios, comparative physical mapping data, genome rearrangement algorithm, ZOO FISH, mammalian evolution, pattern matching, sorting, polynomial time algorithm, string matching, set theory, genetics, biology computing, strings, polynomial algorithm, genomic rearrangements
21	Kuo-Hao Lee, Lei Shi 0006	Unraveling Activation-Related Rearrangements and Intrinsic Divergence from Ligand-Specific Conformational Changes of the Dopamine D3 and D2 Receptors.	J. Chem. Inf. Model.	2024	DBLP DOI BibTeX RDF
21	Diego P. Rubert, Marília D. V. Braga	Efficient gene orthology inference via large-scale rearrangements.	Algorithms Mol. Biol.	2023	DBLP DOI BibTeX RDF
21	Vittoria Bruni, Silvia Marconi, Giuseppina Monteverde, Domenico Vitulano	Radon transform of image monotonic rearrangements as feature for noise sensor signature.	Appl. Math. Comput.	2023	DBLP DOI BibTeX RDF
21	Anna Dal Molin, Caterina Tretti Parenzan, Enrico Gaffo, Cristina Borin, Elena Boldrin, Lueder H. Meyer, Geertruij te Kronnie, Silvia Bresolin, Stefania Bortoluzzi	Discovery of fusion circular RNAs in leukemia with KMT2A::AFF1 rearrangements by the new software CircFusion.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
21	Jose Espejo Valle-Inclán, Isidro Cortés-Ciriano	ReConPlot: an R package for the visualization and interpretation of genomic rearrangements.	Bioinform.	2023	DBLP DOI BibTeX RDF
21	Qiuhong Anna Wei, Sijie Ding, Jeong Joon Park, Rahul Sajnani, Adrien Poulenard, Srinath Sridhar 0002, Leonidas J. Guibas	LEGO-Net: Learning Regular Rearrangements of Objects in Rooms.	CoRR	2023	DBLP DOI BibTeX RDF
21	Qiuhong Anna Wei, Sijie Ding, Jeong Joon Park, Rahul Sajnani, Adrien Poulenard, Srinath Sridhar 0002, Leonidas J. Guibas	LEGO-Net: Learning Regular Rearrangements of Objects in Rooms.	CVPR	2023	DBLP DOI BibTeX RDF
21	Manish Goel, Korbinian Schneeberger	plotsr: visualizing structural similarities and rearrangements between multiple genomes.	Bioinform.	2022	DBLP DOI BibTeX RDF
21	Alexey Zabelkin, Yulia Yakovleva, Olga Bochkareva, Nikita Alexeev	PaReBrick: PArallel REarrangements and BReaks identification toolkit.	Bioinform.	2022	DBLP DOI BibTeX RDF
21		Correction to: plotsr: visualizing structural similarities and rearrangements between multiple genomes.	Bioinform.	2022	DBLP DOI BibTeX RDF
21	Avery Ma, Nikita Dvornik, Ran Zhang, Leila Pishdad, Konstantinos G. Derpanis, Afsaneh Fazly	SAGE: Saliency-Guided Mixup with Optimal Rearrangements.	CoRR	2022	DBLP DOI BibTeX RDF
21	Natalia Petukhova, Alexey Zabelkin, Vitaly Dravgelis, Sergey Aganezov, Nikita Alexeev	Chromothripsis Rearrangements Are Informed by 3D-Genome Organization.	RECOMB-CG	2022	DBLP DOI BibTeX RDF
21	Pijus Simonaitis, Benjamin J. Raphael	A Maximum Parsimony Principle for Multichromosomal Complex Genome Rearrangements.	WABI	2022	DBLP DOI BibTeX RDF
21	Diego P. Rubert, Marília D. V. Braga	Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes.	WABI	2022	DBLP DOI BibTeX RDF
21	Yicheng Li, Joseph Schuchart, George Bosilca	MARs: Memory Access Rearrangements in Open MPI.	ScalAH@SC	2022	DBLP DOI BibTeX RDF
21	Man Xiao, Xihua Bai, Weidong Li 0002	Online Early Work Maximization Problem on Two Hierarchical Machines with Buffer or Rearrangements.	AAIM	2022	DBLP DOI BibTeX RDF
21	Avery Ma, Nikita Dvornik, Ran Zhang, Leila Pishdad, Konstantinos G. Derpanis, Afsaneh Fazly	SAGE: Saliency-Guided Mixup with Optimal Rearrangements.	BMVC	2022	DBLP BibTeX RDF
21	Diego P. Rubert, Daniel Doerr, Marília D. V. Braga	The potential of family-free rearrangements towards gene orthology inference.	J. Bioinform. Comput. Biol.	2021	DBLP DOI BibTeX RDF
21	Kseniia Cheloshkina, Maria Poptsova	Comprehensive analysis of cancer breakpoints reveals signatures of genetic and epigenetic contribution to cancer genome rearrangements.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
21	Laurent Bulteau, Guillaume Fertin, Géraldine Jean, Christian Komusiewicz	Sorting by Multi-Cut Rearrangements.	Algorithms	2021	DBLP DOI BibTeX RDF
21	Laurent Bulteau, Guillaume Fertin, Géraldine Jean, Christian Komusiewicz	Sorting by Multi-cut Rearrangements.	SOFSEM	2021	DBLP DOI BibTeX RDF
21	Modigari Narendra, M. L. Valarmathi, L. Jani Anbarasi, D. R. L. Prasanna	A vector-based watermarking scheme for 3D models using block rearrangements.	Int. J. Grid Util. Comput.	2020	DBLP DOI BibTeX RDF
21	Da-Chun Wu, Hsiu-Yang Su	Steganography via E-Books With the EPUB Format by Rearrangements of the Contents of the CSS Files.	IEEE Access	2020	DBLP DOI BibTeX RDF
21	Satoru Ohta	The number of rearrangements for Clos networks - new results.	Theor. Comput. Sci.	2020	DBLP DOI BibTeX RDF
21	Klairton Lima Brito, Géraldine Jean, Guillaume Fertin, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias	Sorting by Genome Rearrangements on Both Gene Order and Intergenic Sizes.	J. Comput. Biol.	2020	DBLP DOI BibTeX RDF
21	Jasper Braun	Discrete Models and Algorithms for Analyzing DNA Rearrangements.		2020	RDF
21	Alexsandro Oliveira Alexandrino, Guilherme Henrique Santos Miranda, Carla Negri Lintzmayer, Zanoni Dias	Approximation Algorithms for Sorting Permutations by Length-Weighted Short Rearrangements.	LAGOS	2019	DBLP DOI BibTeX RDF
21	Tom Hartmann, Matthias Bernt, Martin Middendorf	An Exact Algorithm for Sorting by Weighted Preserving Genome Rearrangements.	IEEE ACM Trans. Comput. Biol. Bioinform.	2019	DBLP DOI BibTeX RDF
21	Krister M. Swenson, Mathieu Blanchette	Large-scale mammalian genome rearrangements coincide with chromatin interactions.	Bioinform.	2019	DBLP DOI BibTeX RDF
21	Luís Felipe I. Cunha, Fábio Protti	Genome Rearrangements on Multigenomic Models: Applications of Graph Convexity Problems.	J. Comput. Biol.	2019	DBLP DOI BibTeX RDF
21	Pijus Simonaitis, Krister M. Swenson	Finding local genome rearrangements.	Algorithms Mol. Biol.	2018	DBLP DOI BibTeX RDF
21	Yoann Anselmetti, Wandrille Duchemin, Eric Tannier, Cédric Chauve, Sèverine Bérard	Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes.	BMC Genom.	2018	DBLP DOI BibTeX RDF
21	Behrouz Emamizadeh, Amin Farjudian, Yichen Liu	Optimal harvesting strategy based on rearrangements of functions.	Appl. Math. Comput.	2018	DBLP DOI BibTeX RDF
21	Tom Hartmann, Matthias Bernt, Martin Middendorf	EqualTDRL: illustrating equivalent tandem duplication random loss rearrangements.	BMC Bioinform.	2018	DBLP DOI BibTeX RDF
21	Carla Negri Lintzmayer, Guillaume Fertin, Zanoni Dias	Sorting permutations and binary strings by length-weighted rearrangements.	Theor. Comput. Sci.	2018	DBLP DOI BibTeX RDF
21	Kun-Tze Chen, Chin Lung Lu	CSAR-web: a web server of contig scaffolding using algebraic rearrangements.	Nucleic Acids Res.	2018	DBLP DOI BibTeX RDF
21	Kun-Tze Chen, Chia-Liang Liu, Shang-Hao Huang, Hsin-Ting Shen, Yi-Kung Shieh, Hsien-Tai Chiu, Chin Lung Lu	CSAR: a contig scaffolding tool using algebraic rearrangements.	Bioinform.	2018	DBLP DOI BibTeX RDF
21	Layla Oesper, Simone Dantas, Benjamin J. Raphael	Identifying simultaneous rearrangements in cancer genomes.	Bioinform.	2018	DBLP DOI BibTeX RDF
21	Maxim Gilula	A Class of Simple Rearrangements of the Alternating Harmonic Series.	Am. Math. Mon.	2018	DBLP DOI BibTeX RDF
21	Tatiana Maximova, Zijing Zhang, Daniel Carr, Erion Plaku, Amarda Shehu	Sample-Based Models of Protein Energy Landscapes and Slow Structural Rearrangements.	J. Comput. Biol.	2018	DBLP DOI BibTeX RDF
21	Sruthi Chappidi, Sergey Bereg	Visualization of genome rearrangements using DCJ operations.	IWISC	2018	DBLP DOI BibTeX RDF
21	James Melbourne	Rearrangements and information theoretic inequalities.	Allerton	2018	DBLP DOI BibTeX RDF
21	Sylvain Pulicani	Lien entre les réarrangements chromosomiques et la structure de la chromatine chez la Drosophile. (Linking large scale genome rearrangement to chromatin structure in Drosophila).		2018	RDF
21	Marwa Al Arab, Matthias Bernt, Christian Höner zu Siederdissen, Kifah Tout, Peter F. Stadler	Partially local three-way alignments and the sequence signatures of mitochondrial genome rearrangements.	Algorithms Mol. Biol.	2017	DBLP DOI BibTeX RDF
21	Xianglai Qi, Jinjiang Yuan	Semi-online hierarchical scheduling for $$l_p$$ l p -norm load balancing with buffer or rearrangements.	4OR	2017	DBLP DOI BibTeX RDF
21	Carla Negri Lintzmayer, Guillaume Fertin, Zanoni Dias	Sorting permutations by prefix and suffix rearrangements.	J. Bioinform. Comput. Biol.	2017	DBLP DOI BibTeX RDF
21	Zachary D. Stephens, Ravishankar K. Iyer, Chen Wang 0001, Jean-Pierre A. Kocher	Unraveling complex local genomic rearrangements from long-read data.	BIBM	2017	DBLP DOI BibTeX RDF
21	Pijus Simonaitis, Krister M. Swenson	Finding Local Genome Rearrangements.	WABI	2017	DBLP DOI BibTeX RDF
21	Marwa Al Arab	Sequences Signature and Genome Rearrangements in Mitogenomes		2017	RDF
21	Laurent Bulteau, Guillaume Fertin, Eric Tannier	Genome rearrangements with indels in intergenes restrict the scenario space.	BMC Bioinform.	2016	DBLP DOI BibTeX RDF
21	Inimary T. Toby, Mikhail K. Levin, Edward Salinas, Scott Christley, Sanchita Bhattacharya, Felix Breden, Adam Buntzman, Brian Corrie, John M. Fonner, Namita T. Gupta, Uri Hershberg, Nishanth Marthandan, Aaron M. Rosenfeld, William Rounds, Florian Rubelt, Walter Scarborough, Jamie K. Scott, Mohamed Uduman, Jason A. Vander Heiden, Richard H. Scheuermann, Nancy Monson, Steven H. Kleinstein, Lindsay G. Cowell	VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements.	BMC Bioinform.	2016	DBLP DOI BibTeX RDF