|
|
Venues (Conferences, Journals, ...)
|
|
GrowBag graphs for keyword ? (Num. hits/coverage)
Group by:
The graphs summarize 2 occurrences of 2 keywords
|
|
|
Results
Found 32 publication records. Showing 32 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
61 | Adaya N. Cohen, Klara Kedem, Michal Shapira, Danny Barash |
Integration of RNA Search methods for Identifying Novel Riboswitch Patterns in Eukaryotes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CSB Workshops ![In: Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, CSB 2005 Workshops, Stanford, CA, USA, August 8-11, 2005, pp. 193-195, 2005, IEEE Computer Society, 0-7695-2442-7. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
|
57 | Peter Bengert, Thomas Dandekar |
Riboswitch finder tool for identification of riboswitch RNAs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 32(Web-Server-Issue), pp. 154-159, 2004. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
|
36 | Shaojie Zhang, Brian Haas, Eleazar Eskin, Vineet Bafna |
Searching Genomes for Noncoding RNA Using FastR. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE ACM Trans. Comput. Biol. Bioinform. ![In: IEEE ACM Trans. Comput. Biol. Bioinform. 2(4), pp. 366-379, 2005. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
Noncoding RNA, riboswitch, bacterial genome, filtration, database search |
28 | Amit Kumar, Harish Vashisth |
Mechanism of Ligand Discrimination by the NMT1 Riboswitch. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Chem. Inf. Model. ![In: J. Chem. Inf. Model. 63(15), pp. 4864-4874, August 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
28 | Jianzhong Chen, Qingkai Zeng, Wei Wang, Haibo Sun, Guodong Hu |
Decoding the Identification Mechanism of an SAM-III Riboswitch on Ligands through Multiple Independent Gaussian-Accelerated Molecular Dynamics Simulations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Chem. Inf. Model. ![In: J. Chem. Inf. Model. 62(23), pp. 6118-6132, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
28 | Elisabeth Kallert, Tim R. Fischer, Simon Schneider, Maike Grimm, Mark Helm, Christian Kersten |
Protein-Based Virtual Screening Tools Applied for RNA-Ligand Docking Identify New Binders of the preQ1-Riboswitch. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Chem. Inf. Model. ![In: J. Chem. Inf. Model. 62(17), pp. 4134-4148, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
28 | Indu Negi, Amanpreet Singh Mahmi, Preethi Seelam Prabhakar, Purshotam Sharma |
Molecular Dynamics Simulations of the Aptamer Domain of Guanidinium Ion Binding Riboswitch ykkC-III: Structural Insights into the Discrimination of Cognate and Alternate Ligands. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Chem. Inf. Model. ![In: J. Chem. Inf. Model. 61(10), pp. 5243-5255, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
28 | Jorge A. Marchand, Merrick D. Pierson smela, Thomas H. H. Jordan, Kamesh Narasimhan, George M. Church |
TBDB: a database of structurally annotated T-box riboswitch: tRNA pairs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 49(Database-Issue), pp. D229-D235, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
28 | Guodong Hu, Huan-Xiang Zhou |
Binding free energy decomposition and multiple unbinding paths of buried ligands in a PreQ1 riboswitch. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PLoS Comput. Biol. ![In: PLoS Comput. Biol. 17(11), 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
28 | Solomon Shiferaw Beyene, Tianyi Ling, Blagoj Ristevski, Ming Chen 0005 |
A novel riboswitch classification based on imbalanced sequences achieved by machine learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PLoS Comput. Biol. ![In: PLoS Comput. Biol. 16(7), 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
|
28 | Matt Crum, Nikhil Ram-Mohan, Michelle M. Meyer |
Regulatory context drives conservation of glycine riboswitch aptamers. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PLoS Comput. Biol. ![In: PLoS Comput. Biol. 15(12), 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
|
28 | Hugo A. Guillen-Ramirez, Israel M. Martínez-Pérez |
Classification of riboswitch sequences using k-mer frequencies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Biosyst. ![In: Biosyst. 174, pp. 63-76, 2018. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
|
28 | Manish Kesherwani, Kutumbarao N. H. V, Devadasan Velmurugan |
Conformational Dynamics of thiM Riboswitch To Understand the Gene Regulation Mechanism Using Markov State Modeling and the Residual Fluctuation Network Approach. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Chem. Inf. Model. ![In: J. Chem. Inf. Model. 58(8), pp. 1638-1651, 2018. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
|
28 | Guodong Hu, Aijing Ma, Jihua Wang |
Ligand Selectivity Mechanism and Conformational Changes in Guanine Riboswitch by Molecular Dynamics Simulations and Free Energy Calculations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Chem. Inf. Model. ![In: J. Chem. Inf. Model. 57(4), pp. 918-928, 2017. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
28 | Christian A. Hanke, Holger Gohlke |
Tertiary Interactions in the Unbound Guanine-Sensing Riboswitch Focus Functional Conformational Variability on the Binding Site. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Chem. Inf. Model. ![In: J. Chem. Inf. Model. 57(11), pp. 2822-2832, November 2017. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
28 | Susmita Roy, Heiko Lammert, Ryan L. Hayes, Bin Chen, Regan LeBlanc, T. Kwaku Dayie, José N. Onuchic, Karissa Y. Sanbonmatsu |
A magnesium-induced triplex pre-organizes the SAM-II riboswitch. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PLoS Comput. Biol. ![In: PLoS Comput. Biol. 13(3), 2017. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
28 | Sumit Mukherjee, Supratim Sengupta |
Riboswitch Scanner: an efficient pHMM-based web-server to detect riboswitches in genomic sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 32(5), pp. 776-778, 2016. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
|
28 | Amritpreet Kaur, Somdutt Mujwar, Neeru Adlakha |
In-silico analysis of riboswitch of Nocardia farcinica for design of its inhibitors and pharmacophores. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Int. J. Comput. Biol. Drug Des. ![In: Int. J. Comput. Biol. Drug Des. 9(3), pp. 261-276, 2016. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
|
28 | Francesco Di Palma, Sandro Bottaro, Giovanni Bussi |
Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 16(S-9), pp. S6, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
28 | Amirhossein Manzourolajdad, Jonathan P. Arnold |
Secondary structural entropy in RNA switch (Riboswitch) identification. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 16, pp. 133:1-133:77, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
28 | Somdutt Mujwar, Kamal Raj Pardasani |
Prediction of riboswitch as a potential drug target and design of its optimal inhibitors for Mycobacterium tuberculosis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Int. J. Comput. Biol. Drug Des. ![In: Int. J. Comput. Biol. Drug Des. 8(4), pp. 326-347, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
28 | Sunita Yadav, D. Swati, Hariharan Chandrasekharan |
Thiamine Pyrophosphate Riboswitch in Some Representative Plant Species: A Bioinformatics Study. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Biol. ![In: J. Comput. Biol. 22(1), pp. 1-9, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
28 | Yuan Li, Cuncong Zhong, Shaojie Zhang |
Finding consensus stable local optimal structures for aligned RNA sequences and its application to discovering riboswitch elements. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Int. J. Bioinform. Res. Appl. ![In: Int. J. Bioinform. Res. Appl. 10(4/5), pp. 498-518, 2014. The full citation details ...](Pics/full.jpeg) |
2014 |
DBLP DOI BibTeX RDF |
|
28 | Kokoro Hamachi, Hikari Hayashi, Miyuki Shimamura, Yuiha Yamaji, Ai Kaneko, Aruma Fujisawa, Takuya Umehara, Koji Tamura |
Glycols modulate terminator stem stability and ligand-dependency of a glycine riboswitch. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Biosyst. ![In: Biosyst. 113(2), pp. 59-65, 2013. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP DOI BibTeX RDF |
|
28 | Ben Sauerwine, Michael Widom |
Folding Kinetics of Riboswitch Transcriptional Terminators and Sequesterers. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Entropy ![In: Entropy 15(8), pp. 3088-3099, 2013. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP DOI BibTeX RDF |
|
28 | Wei Huang, Joohyun Kim 0001, Shantenu Jha, Fareed Aboul-Ela |
The Impact of a Ligand Binding on Strand Migration in the SAM-I Riboswitch. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PLoS Comput. Biol. ![In: PLoS Comput. Biol. 9(5), 2013. The full citation details ...](Pics/full.jpeg) |
2013 |
DBLP DOI BibTeX RDF |
|
28 | Franziska Jentzsch, Jennifer V. Hines |
Interfacing medicinal chemistry with structural bioinformatics: implications for T box riboswitch RNA drug discovery. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 13(S-2), pp. S5, 2012. The full citation details ...](Pics/full.jpeg) |
2012 |
DBLP DOI BibTeX RDF |
|
28 | Payal Singh, Pradipta Bandyopadhyay, Sudha Bhattacharya, A. Krishnamachari, Supratim Sengupta |
Riboswitch Detection Using Profile Hidden Markov Models. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 10, pp. 325, 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
28 | Chase L. Beisel, Christina D. Smolke |
Design Principles for Riboswitch Function. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PLoS Comput. Biol. ![In: PLoS Comput. Biol. 5(4), 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
28 | Eva Freyhult, Vincent Moulton, Peter Clote |
Boltzmann probability of RNA structural neighbors and riboswitch detection. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 23(16), pp. 2054-2062, 2007. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
28 | Shaojie Zhang, Ilya Borovok, Yair Aharonowitz, Roded Sharan, Vineet Bafna |
A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISMB (Supplement of Bioinformatics) ![In: Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, Fortaleza, Brazil, August 6-10, 2006, pp. 557-565, 2006. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
28 | Oriel Bergig, Danny Barash, Evgeny Nudler, Klara Kedem |
STR2: A structure to string approach for locating G-box riboswitch shapes in pre-selected genes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Silico Biol. ![In: Silico Biol. 4(4), pp. 593-604, 2004. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP BibTeX RDF |
|
Displaying result #1 - #32 of 32 (100 per page; Change: )
|
|