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Venues (Conferences, Journals, ...)
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GrowBag graphs for keyword ? (Num. hits/coverage)
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The graphs summarize 103 occurrences of 65 keywords
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Results
Found 182 publication records. Showing 182 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
117 | Xiandong Meng, Vipin Chaudhary |
Bio-sequence analysis with cradle's 3SoCTM software scalable system on chip. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SAC ![In: Proceedings of the 2004 ACM Symposium on Applied Computing (SAC), Nicosia, Cyprus, March 14-17, 2004, pp. 202-206, 2004, ACM, 1-58113-812-1. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
3SoC chip, Digital Signal Processors, Smith-Waterman algorithm |
112 | Jeffrey Allred, Jack Coyne, William Lynch, Vincent Natoli, Joseph Grecco, Joel Morrissette |
Smith-Waterman implementation on a FSB-FPGA module using the Intel Accelerator Abstraction Layer. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS ![In: 23rd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2009, Rome, Italy, May 23-29, 2009, pp. 1-4, 2009, IEEE. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
112 | Shannon Steinfadt, Johnnie W. Baker |
SWAMP: Smith-Waterman using associative massive parallelism. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS ![In: 22nd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2008, Miami, Florida USA, April 14-18, 2008, pp. 1-8, 2008, IEEE. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
112 | Mustafa Gök, Çaglar Yilmaz |
Efficient Cell Designs for Systolic Smith-Waterman Implementations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
FPL ![In: Proceedings of the 2006 International Conference on Field Programmable Logic and Applications (FPL), Madrid, Spain, August 28-30, 2006, pp. 1-4, 2006, IEEE, 1-4244-0312-X. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
105 | Peiheng Zhang, Guangming Tan, Guang R. Gao |
Implementation of the Smith-Waterman algorithm on a reconfigurable supercomputing platform. ![Search on Bibsonomy](Pics/bibsonomy.png) |
HPRCTA ![In: Proceedings of the 1st international workshop on High-performance reconfigurable computing technology and applications, HPRCTA 2007,held in conjunction with SC07, Reno, Nevada, USA, November 11, 2007, pp. 39-48, 2007, ACM Press, 978-1-59593-894-7. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
reconfigurable supercomputing, FPGA, coprocessor, Smith-Waterman algorithm |
92 | Shuangyuan Wu, Shihong Xia, Zhaoqi Wang, Chunpeng Li |
Efficient motion data indexing and retrieval with local similarity measure of motion strings. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Vis. Comput. ![In: Vis. Comput. 25(5-7), pp. 499-508, 2009. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
Indexing, Self-organizing map, Retrieval, Smith-Waterman algorithm, Motion capture data |
87 | Brandon Harris, Arpith C. Jacob, Joseph M. Lancaster, Jeremy Buhler, Roger D. Chamberlain |
A Banded Smith-Waterman FPGA Accelerator for Mercury BLASTP. ![Search on Bibsonomy](Pics/bibsonomy.png) |
FPL ![In: FPL 2007, International Conference on Field Programmable Logic and Applications, Amsterdam, The Netherlands, 27-29 August 2007, pp. 765-769, 2007, IEEE, 1-4244-1060-6. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
87 | Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Mauricio Ayala-Rincón, Thomas Mailleux Santana |
Parallel Smith-Waterman Algorithm for Local DNA Comparison in a Cluster of Workstations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WEA ![In: Experimental and Efficient Algorithms, 4th InternationalWorkshop, WEA 2005, Santorini Island, Greece, May 10-13, 2005, Proceedings, pp. 464-475, 2005, Springer, 3-540-25920-1. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
|
87 | Chi Wai Yu, K. H. Kwong, Kin-Hong Lee, Philip Heng Wai Leong |
A Smith-Waterman Systolic Cell. ![Search on Bibsonomy](Pics/bibsonomy.png) |
FPL ![In: Field Programmable Logic and Application, 13th International Conference, FPL 2003, Lisbon, Portugal, September 1-3, 2003, Proceedings, pp. 375-384, 2003, Springer, 3-540-40822-3. The full citation details ...](Pics/full.jpeg) |
2003 |
DBLP DOI BibTeX RDF |
|
74 | Gabriel Caffarena, Slobodan Bojanic, Juan A. López, Carlos E. Pedreira, Octavio Nieto-Taladriz |
High-speed systolic array for gene matching. ![Search on Bibsonomy](Pics/bibsonomy.png) |
FPGA ![In: Proceedings of the ACM/SIGDA 12th International Symposium on Field Programmable Gate Arrays, FPGA 2004, Monterey, California, USA, February 22-24, 2004, pp. 248, 2004, ACM, 1-58113-829-6. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
|
74 | Stefan Dydel, Piotr Bala |
Large Scale Protein Sequence Alignment Using FPGA Reprogrammable Logic Devices. ![Search on Bibsonomy](Pics/bibsonomy.png) |
FPL ![In: Field Programmable Logic and Application, 14th International Conference , FPL 2004, Leuven, Belgium, August 30-September 1, 2004, Proceedings, pp. 23-32, 2004, Springer, 3-540-22989-2. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
|
74 | Eric Breimer, Mark K. Goldberg |
Learning Significant Alignments: An Alternative to Normalized Local Alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISMIS ![In: Foundations of Intelligent Systems, 13th International Symposium, ISMIS 2002, Lyon, France, June 27-29, 2002, Proceedings, pp. 37-45, 2002, Springer, 3-540-43785-1. The full citation details ...](Pics/full.jpeg) |
2002 |
DBLP DOI BibTeX RDF |
|
74 | Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner |
A new approach to sequence comparison: normalized sequence alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
RECOMB ![In: Proceedings of the Fifth Annual International Conference on Computational Biology, RECOMB 2001, Montréal, Québec, Canada, April 22-25, 2001, pp. 2-11, 2001, ACM, 1-58113-353-7. The full citation details ...](Pics/full.jpeg) |
2001 |
DBLP DOI BibTeX RDF |
|
68 | Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo |
CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
PPoPP ![In: Proceedings of the 15th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP 2010, Bangalore, India, January 9-14, 2010, pp. 137-146, 2010, ACM, 978-1-60558-877-3. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
biological sequence comparison, gpu, smith-waterman |
68 | Shuangyuan Wu, Zhaoqi Wang, Shihong Xia |
Indexing and retrieval of human motion data by a hierarchical tree. ![Search on Bibsonomy](Pics/bibsonomy.png) |
VRST ![In: Proceedings of the ACM Symposium on Virtual Reality Software and Technology, VRST 2009, Kyoto, Japan, November 18-20, 2009, pp. 207-214, 2009, ACM, 978-1-60558-869-8. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
indexing, self-organizing map, motion capture, retrieval, hierarchical clustering, Smith-Waterman algorithm |
68 | Takahisa Ota, Shigeru Masuyama |
Automatic plagiarism detection among term papers. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IUCS ![In: Proceedings of the 3rd International Universal Communication Symposium, IUCS 2009, Tokyo, Japan, 3-4 December 2009, pp. 395-399, 2009, ACM, 978-1-60558-641-0. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
partial text alignment, term papers, dynamic programming, plagiarism detection, Smith-Waterman algorithm |
68 | Ashwin M. Aji, Wu-chun Feng, Filip Blagojevic, Dimitrios S. Nikolopoulos |
Cell-SWat: modeling and scheduling wavefront computations on the cell broadband engine. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Conf. Computing Frontiers ![In: Proceedings of the 5th Conference on Computing Frontiers, 2008, Ischia, Italy, May 5-7, 2008, pp. 13-22, 2008, ACM, 978-1-60558-077-7. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
wavefront algorithms, cell broadband engine, smith-waterman |
68 | Somesh Jha, Louis Kruger, Vitaly Shmatikov |
Towards Practical Privacy for Genomic Computation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SP ![In: 2008 IEEE Symposium on Security and Privacy (SP 2008), 18-21 May 2008, Oakland, California, USA, pp. 216-230, 2008, IEEE Computer Society, 978-0-7695-3168-7. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
Privacy, Edit Distance, Genome, Secure Multi-Party Computation, Smith-Waterman |
68 | Chunyan Wang 0002, Paul M. K. Gordon, Andrei L. Turinsky, Jason Burgess, Terry Dalton, Christoph W. Sensen |
Combining a High-Throughput Bioinformatics Grid and Bioinformatics Web Services. ![Search on Bibsonomy](Pics/bibsonomy.png) |
GCCB ![In: Distributed, High-Performance and Grid Computing in Computational Biology , International Workshop, GCCB 2006, Eilat, Israel, January 21, 2007, Proceeding, pp. 1-10, 2006, Springer, 3-540-69841-8. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
BioMOBY, Sun N1 Grid Engine, Web services, grid, hidden Markov model, Bioinformatics, sequence alignment, Smith-Waterman |
68 | Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell |
Hyper customized processors for bio-sequence database scanning on FPGAs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
FPGA ![In: Proceedings of the ACM/SIGDA 13th International Symposium on Field Programmable Gate Arrays, FPGA 2005, Monterey, California, USA, February 20-22, 2005, pp. 229-237, 2005, ACM, 1-59593-029-9. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
dynamic re-configuration, FPGA, bio-informatics, Smith-Waterman |
62 | Zubair Nawaz, Zaid Al-Ars, Koen Bertels, Mudassir Shabbir |
Acceleration of Smith-Waterman using Recursive Variable Expansion. ![Search on Bibsonomy](Pics/bibsonomy.png) |
DSD ![In: 11th Euromicro Conference on Digital System Design: Architectures, Methods and Tools, DSD 2008, Parma, Italy, September 3-5, 2008, pp. 915-922, 2008, IEEE Computer Society, 978-0-7695-3277-6. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
62 | Yuma Munekawa, Fumihiko Ino, Kenichi Hagihara |
Design and implementation of the Smith-Waterman algorithm on the CUDA-compatible GPU. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBE ![In: Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2008, October 8-10, 2008, Athens, Greece, pp. 1-6, 2008, IEEE, 978-1-4244-2845-8. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
62 | Daniel E. Riedel, Svetha Venkatesh, Wanquan Liu |
A Smith-Waterman Local Alignment Approach for Spatial Activity Recognition. ![Search on Bibsonomy](Pics/bibsonomy.png) |
AVSS ![In: Advanced Video and Signal Based Surveillance, 2006 IEEE International Conference on Video and Signal Based Surveillance (AVSS'06), 22-24 November 2006, Sydney, Australia., pp. 54, 2006, IEEE Computer Society, 0-7695-2688-8. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
62 | Yang Liu, Wayne Huang 0002, John Johnson, Sheila Vaidya |
GPU Accelerated Smith-Waterman. ![Search on Bibsonomy](Pics/bibsonomy.png) |
International Conference on Computational Science (4) ![In: Computational Science - ICCS 2006, 6th International Conference, Reading, UK, May 28-31, 2006, Proceedings, Part IV, pp. 188-195, 2006, Springer, 3-540-34385-7. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
62 | Patrick May, Gunnar W. Klau, Markus Bauer 0001, Thomas Steinke 0001 |
Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
GCCB ![In: Distributed, High-Performance and Grid Computing in Computational Biology , International Workshop, GCCB 2006, Eilat, Israel, January 21, 2007, Proceeding, pp. 19-32, 2006, Springer, 3-540-69841-8. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
62 | Gene Myers, Richard Durbin |
Invited Lecture - Accelerating Smith-Waterman Searches. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: Algorithms in Bioinformatics, Second International Workshop, WABI 2002, Rome, Italy, September 17-21, 2002, Proceedings, pp. 331-342, 2002, Springer, 3-540-44211-1. The full citation details ...](Pics/full.jpeg) |
2002 |
DBLP DOI BibTeX RDF |
|
50 | Gregory M. Striemer, Ali Akoglu |
Sequence alignment with GPU: Performance and design challenges. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS ![In: 23rd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2009, Rome, Italy, May 23-29, 2009, pp. 1-10, 2009, IEEE. The full citation details ...](Pics/full.jpeg) |
2009 |
DBLP DOI BibTeX RDF |
|
50 | Betul Buyukkurt, Walid A. Najjar |
Compiler generated systolic arrays for wavefront algorithm acceleration on FPGAs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
FPL ![In: FPL 2008, International Conference on Field Programmable Logic and Applications, Heidelberg, Germany, 8-10 September 2008, pp. 655-658, 2008, IEEE, 978-1-4244-1961-6. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
50 | Xinghui Wang, Du Xu |
An Efficient Sequence Alignment Algorithm of Network Traffic. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICNSC ![In: Proceedings of the IEEE International Conference on Networking, Sensing and Control, ICNSC 2008, Hainan, China, 6-8 April 2008, pp. 1743-1746, 2008, IEEE, 978-1-4244-1685-1. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
|
50 | Arpith C. Jacob, Sugata Sanyal, Marcin Paprzycki, Rajan Arora, Maria Ganzha |
Whole Genome Comparison on a Network of Workstations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISPDC ![In: 6th International Symposium on Parallel and Distributed Computing (ISPDC 2007), Hagenberg, Austria, July 5-8, 2007, pp. 31-36, 2007, IEEE Computer Society, 0-7695-2936-4. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
50 | Khaled Benkrid, Ying Liu 0003, Abdsamad Benkrid |
Design and Implementation of a Highly Parameterised FPGA-Based Skeleton for Pairwise Biological Sequence Alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
FCCM ![In: IEEE Symposium on Field-Programmable Custom Computing Machines, FCCM 2007, 23-25 April 2007, Napa, California, USA, pp. 275-278, 2007, IEEE Computer Society, 0-7695-2940-2. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
50 | J. Javier Martínez-Álvarez, F. Javier Toledo-Moreo, José Manuel Ferrández de Vicente |
Discrete-Time Cellular Neural Networks in FPGA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
FCCM ![In: IEEE Symposium on Field-Programmable Custom Computing Machines, FCCM 2007, 23-25 April 2007, Napa, California, USA, pp. 293-294, 2007, IEEE Computer Society, 0-7695-2940-2. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
|
50 | Rolf Backofen, Danny Hermelin, Gad M. Landau, Oren Weimann |
Local Alignment of RNA Sequences with Arbitrary Scoring Schemes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CPM ![In: Combinatorial Pattern Matching, 17th Annual Symposium, CPM 2006, Barcelona, Spain, July 5-7, 2006, Proceedings, pp. 246-257, 2006, Springer, 3-540-35455-7. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
50 | Weiguo Liu, Bertil Schmidt, Gerrit Voss, Adrian Schröder, Wolfgang Müller-Wittig |
Bio-sequence database scanning on a GPU. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS ![In: 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), Proceedings, 25-29 April 2006, Rhodes Island, Greece, 2006, IEEE. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
50 | Friman Sánchez, Esther Salamí, Alex Ramírez, Mateo Valero |
Performance Analysis of Sequence Alignment Applications. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IISWC ![In: Proceedings of the 2006 IEEE International Symposium on Workload Characterization, IISWC 2006, October 25-27, 2006, San Jose, California, USA, pp. 51-60, 2006, IEEE Computer Society, 1-4244-0508-4. The full citation details ...](Pics/full.jpeg) |
2006 |
DBLP DOI BibTeX RDF |
|
50 | Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Mauricio Ayala-Rincón, Thomas Mailleux Santana |
Parallel Strategies for Local Biological Sequence Alignment in a Cluster of Workstations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS ![In: 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), CD-ROM / Abstracts Proceedings, 4-8 April 2005, Denver, CO, USA, 2005, IEEE Computer Society, 0-7695-2312-9. The full citation details ...](Pics/full.jpeg) |
2005 |
DBLP DOI BibTeX RDF |
|
50 | Greg Knowles, Paul Gardner-Stephen |
A New Hardware Architecture for Genomic and Proteomic Sequence Alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CSB ![In: 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2004, Stanford, CA, USA, August 16-19, 2004, pp. 730-731, 2004, IEEE Computer Society, 0-7695-2194-0. The full citation details ...](Pics/full.jpeg) |
2004 |
DBLP DOI BibTeX RDF |
|
50 | Xiaojun Guan, Richard J. Mural, Edward C. Uberbacher |
Sequence comparison on a cluster of workstations using the PVM system. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPPS ![In: Proceedings of IPPS '95, The 9th International Parallel Processing Symposium, April 25-28, 1995, Santa Barbara, California, USA, pp. 190-195, 1995, IEEE Computer Society, 0-8186-7074-6. The full citation details ...](Pics/full.jpeg) |
1995 |
DBLP DOI BibTeX RDF |
PVM system, molecular biology research, DNA data, Intel iPSC/860 hypercube, Internet servers GRAIL, GENQUEST, Internet, performance, hypercube networks, DNA, cluster of workstations, massively parallel computer, medical computing, sequence comparison, molecular biophysics |
43 | Xiandong Meng, Vipin Chaudhary |
A High-Performance Heterogeneous Computing Platform for Biological Sequence Analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE Trans. Parallel Distributed Syst. ![In: IEEE Trans. Parallel Distributed Syst. 21(9), pp. 1267-1280, 2010. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
Index Term—Heterogeneous computing platform, FPGA, dynamic programming, MPI, SIMD, sequence alignment, HPC, Smith-Waterman algorithm, SSE2 |
43 | Sunita Chandrasekaran, Shilpa Shanbagh, Douglas L. Maskell |
A dependency graph based methodology for parallelizing HLL applications on FPGA (abstract only). ![Search on Bibsonomy](Pics/bibsonomy.png) |
FPGA ![In: Proceedings of the ACM/SIGDA 18th International Symposium on Field Programmable Gate Arrays, FPGA 2010, Monterey, California, USA, February 21-23, 2010, pp. 286, 2010, ACM, 978-1-60558-911-4. The full citation details ...](Pics/full.jpeg) |
2010 |
DBLP DOI BibTeX RDF |
fpgas, bioinformatics, sequence alignment, data dependency analysis, smith-waterman algorithm |
43 | David Hoksza |
Improved Alignment of Protein Sequences Based on Common Parts. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISBRA ![In: Bioinformatics Research and Applications, Fourth International Symposium, ISBRA 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings, pp. 87-99, 2008, Springer, 978-3-540-79449-3. The full citation details ...](Pics/full.jpeg) |
2008 |
DBLP DOI BibTeX RDF |
Smith-Waterman algorithm, protein databases |
43 | Xiandong Meng, Vipin Chaudhary |
An adaptive data prefetching scheme for biosequence database search on reconfigurable platforms. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SAC ![In: Proceedings of the 2007 ACM Symposium on Applied Computing (SAC), Seoul, Korea, March 11-15, 2007, pp. 140-141, 2007, ACM, 1-59593-480-4. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
FPGA, data prefetching, DMA, Smith-Waterman algorithm |
43 | Le Phong Bao Vuong, Xiaoying Gao |
Using Clustering for Web Information Extraction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Australian Conference on Artificial Intelligence ![In: AI 2007: Advances in Artificial Intelligence, 20th Australian Joint Conference on Artificial Intelligence, Gold Coast, Australia, December 2-6, 2007, Proceedings, pp. 415-424, 2007, Springer, 978-3-540-76926-2. The full citation details ...](Pics/full.jpeg) |
2007 |
DBLP DOI BibTeX RDF |
clustering, Information extraction, Smith-Waterman algorithm |
38 | Samantha Petti, Nicholas Bhattacharya, Roshan Rao, Justas Dauparas, Neil Thomas, Juannan Zhou, Alexander M. Rush, Peter Koo, Sergey Ovchinnikov |
End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
38 | Yaning Wang, Zhiguang Chen, Yuxiao Han |
Accelerating the Smith-Waterman algorithm by GPU for high-throughput sequence alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
MICML ![In: Proceedings of the 2023 International Conference on Mathematics, Intelligent Computing and Machine Learning, MICML 2023, Chengdu, China, December 15-17, 2023, pp. 77-84, 2023, ACM. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
38 | Junhyuk Baik, Donghui Lee, Yongtae Kim |
A Smith-Waterman Hardware Accelerator Design using Sliding Window for Genomic Sequence Alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISOCC ![In: 20th International SoC Design Conference, ISOCC 2023, Jeju, Republic of Korea, October 25-28, 2023, pp. 1-2, 2023, IEEE, 979-8-3503-2703-8. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
38 | Konstantina Koliogeorgi, Dimitrios Soudris, Sotirios Xydis |
Profile-Driven Banded Smith-Waterman acceleration for Short Read Alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
DAC ![In: 60th ACM/IEEE Design Automation Conference, DAC 2023, San Francisco, CA, USA, July 9-13, 2023, pp. 1-6, 2023, IEEE, 979-8-3503-2348-1. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
38 | Manuel Costanzo, Enzo Rucci, Carlos García Sánchez 0001, Marcelo R. Naiouf, Manuel Prieto-Matías |
Migrating CUDA to oneAPI: A Smith-Waterman Case Study. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2203.11100, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
38 | Rafael Hidalgo, Anthony DeVito, Nesreen Salah, Aparna S. Varde, Robert W. Meredith |
Inferring Phylogenetic Relationships using the Smith-Waterman Algorithm and Hierarchical Clustering. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEEE Big Data ![In: IEEE International Conference on Big Data, Big Data 2022, Osaka, Japan, December 17-20, 2022, pp. 5910-5914, 2022, IEEE, 978-1-6654-8045-1. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
38 | Manuel Costanzo, Enzo Rucci, Carlos García Sánchez 0001, Marcelo R. Naiouf, Manuel Prieto-Matías |
Migrating CUDA to oneAPI: A Smith-Waterman Case Study. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IWBBIO (2) ![In: Bioinformatics and Biomedical Engineering - 9th International Work-Conference, IWBBIO 2022, Maspalomas, Gran Canaria, Spain, June 27-30, 2022, Proceedings, Part II, pp. 103-116, 2022, Springer, 978-3-031-07801-9. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
38 | Luyi Li, Jun Lin 0001, Zhongfeng Wang 0001 |
PipeBSW: A Two-Stage Pipeline Structure for Banded Smith-Waterman Algorithm on FPGA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISVLSI ![In: IEEE Computer Society Annual Symposium on VLSI, ISVLSI 2021, Tampa, FL, USA, July 7-9, 2021, pp. 182-187, 2021, IEEE, 978-1-6654-3946-6. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
38 | Mahdi Taheri, Hamed Zandevakili, Ali Mahani 0001 |
A high-performance MEMRISTOR-based Smith-Waterman DNA sequence alignment Using FPNI structure. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2009.09787, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP BibTeX RDF |
|
38 | Yujie Zhang, Jiajun Wu 0004, Minghao Li, Jun Lin 0001, Zhongfeng Wang 0001 |
A Three-Level Scoring System for Fast Similarity Evaluation Based on Smith-Waterman Algorithm. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ISCAS ![In: IEEE International Symposium on Circuits and Systems, ISCAS 2020, Sevilla, Spain, October 10-21, 2020, pp. 1-5, 2020, IEEE, 978-1-7281-3320-1. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
|
38 | Takahiro Nishimura, Jacir Luiz Bordim, Yasuaki Ito, Koji Nakano |
Accelerating the Smith-Waterman Algorithm Using the Bitwise Parallel Bulk Computation Technique on the GPU. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEICE Trans. Inf. Syst. ![In: IEICE Trans. Inf. Syst. 102-D(12), pp. 2400-2408, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
|
38 | Huihui Zou, Shanjiang Tang, Ce Yu, Hao Fu, Yusen Li, Wenjie Tang |
ASW: Accelerating Smith-Waterman Algorithm on Coupled CPU-GPU Architecture. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Int. J. Parallel Program. ![In: Int. J. Parallel Program. 47(3), pp. 388-402, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
|
38 | Enzo Rucci, Carlos García Sánchez 0001, Guillermo Botella Juan, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías |
SWIMM 2.0: Enhanced Smith-Waterman on Intel's Multicore and Manycore Architectures Based on AVX-512 Vector Extensions. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Int. J. Parallel Program. ![In: Int. J. Parallel Program. 47(2), pp. 296-316, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
|
38 | Roman Snytsar |
De(con)struction of the lazy-F loop: improving performance of Smith Waterman alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/1909.00899, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP BibTeX RDF |
|
38 | D. Venkata Vara Prasad, Suresh Jaganathan |
Improving the performance of Smith-Waterman sequence algorithm on GPU using shared memory for biological protein sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Clust. Comput. ![In: Clust. Comput. 22(Supplement), pp. 9495-9504, 2019. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
|
38 | Meysam Roodi, Andreas Moshovos |
SW+: On Accelerating Smith-Waterman Execution of GATK HaplotypeCaller. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CIBB ![In: Computational Intelligence Methods for Bioinformatics and Biostatistics - 16th International Meeting, CIBB 2019, Bergamo, Italy, September 4-6, 2019, Revised Selected Papers, pp. 133-141, 2019, Springer, 978-3-030-63060-7. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
|
38 | Roman Snytsar |
De(con) Struction of the Lazy-F Loop: Improving Performance of Smith Waterman Alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBE ![In: 19th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2019, Athens, Greece, October 28-30, 2019, pp. 7-10, 2019, IEEE, 978-1-7281-4617-1. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
|
38 | Konstantina Koliogeorgi, Nils Voss, Sotiria Fytraki, Sotirios Xydis, Georgi Gaydadjiev, Dimitrios Soudris |
Dataflow Acceleration of Smith-Waterman with Traceback for High Throughput Next Generation Sequencing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
FPL ![In: 29th International Conference on Field Programmable Logic and Applications, FPL 2019, Barcelona, Spain, September 8-12, 2019, pp. 74-80, 2019, IEEE, 978-1-7281-4884-7. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
|
38 | Alexander Tiskin |
Bounded-Length Smith-Waterman Alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
WABI ![In: 19th International Workshop on Algorithms in Bioinformatics, WABI 2019, September 8-10, 2019, Niagara Falls, NY, USA., pp. 16:1-16:12, 2019, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 978-3-95977-123-8. The full citation details ...](Pics/full.jpeg) |
2019 |
DBLP DOI BibTeX RDF |
|
38 | Ibrahim M. El-Henawy, Kareem Ahmed, Hamdi Mahmoud |
Action recognition using fast HOG3D of integral videos and Smith-Waterman partial matching. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IET Image Process. ![In: IET Image Process. 12(6), pp. 896-908, 2018. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
|
38 | Enzo Rucci, Carlos García 0001, Guillermo Botella, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto 0001 |
SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Syst. Biol. ![In: BMC Syst. Biol. 12(5), pp. 43-53, 2018. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
|
38 | Marek Palkowski, Wlodzimierz Bielecki |
Parallel Tiled Codes Implementing the Smith-Waterman Alignment Algorithm for Two and Three Sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Biol. ![In: J. Comput. Biol. 25(10), pp. 1106-1119, 2018. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
|
38 | Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars |
Comparative Analysis of System-Level Acceleration Techniques in Bioinformatics: A Case Study of Accelerating the Smith-Waterman Algorithm for BWA-MEM. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBE ![In: 18th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2018, Taichung, Taiwan, October 29-31, 2018, pp. 243-246, 2018, IEEE, 978-1-5386-6217-5. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
|
38 | Yi-Lun Liao, Yu-Cheng Li, Nae-Chyun Chen, Yi-Chang Lu |
Adaptively Banded Smith-Waterman Algorithm for Long Reads and Its Hardware Accelerator. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ASAP ![In: 29th IEEE International Conference on Application-specific Systems, Architectures and Processors, ASAP 2018, Milano, Italy, July 10-12, 2018, pp. 1-9, 2018, IEEE Computer Society, 978-1-5386-7479-6. The full citation details ...](Pics/full.jpeg) |
2018 |
DBLP DOI BibTeX RDF |
|
38 | Enzo Rucci, Carlos García 0001, Guillermo Botella, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías |
First Experiences Optimizing Smith-Waterman on Intel's Knights Landing Processor. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/1702.07195, 2017. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP BibTeX RDF |
|
38 | Lorenzo Di Tucci, Kenneth O'Brien, Michaela Blott, Marco D. Santambrogio |
Architectural optimizations for high performance and energy efficient Smith-Waterman implementation on FPGAs using OpenCL. ![Search on Bibsonomy](Pics/bibsonomy.png) |
DATE ![In: Design, Automation & Test in Europe Conference & Exhibition, DATE 2017, Lausanne, Switzerland, March 27-31, 2017, pp. 716-721, 2017, IEEE, 978-3-9815370-8-6. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
38 | Ernst Houtgast, Vlad Mihai Sima, Zaid Al-Ars |
High Performance Streaming Smith-Waterman Implementation with Implicit Synchronization on Intel FPGA using OpenCL. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBE ![In: 17th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2017, Washington, DC, USA, October 23-25, 2017, pp. 492-496, 2017, IEEE Computer Society, 978-1-5386-1324-5. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
38 | Bo Xu, Changlong Li, Hang Zhuang, Jiali Wang, Qingfeng Wang, Xuehai Zhou |
Efficient Distributed Smith-Waterman Algorithm Based on Apache Spark. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CLOUD ![In: 2017 IEEE 10th International Conference on Cloud Computing (CLOUD), Honolulu, HI, USA, June 25-30, 2017, pp. 608-615, 2017, IEEE Computer Society, 978-1-5386-1993-3. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
38 | Simone Casale Brunet, Endri Bezati, Marco Mattavelli |
Design space exploration of dataflow-based Smith-Waterman FPGA implementations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SiPS ![In: 2017 IEEE International Workshop on Signal Processing Systems, SiPS 2017, Lorient, France, October 3-5, 2017, pp. 1-6, 2017, IEEE, 978-1-5386-0446-5. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
38 | Simone Casale Brunet, Endri Bezati, Marco Mattavelli |
High level synthesis of Smith-Waterman dataflow implementations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICASSP ![In: 2017 IEEE International Conference on Acoustics, Speech and Signal Processing, ICASSP 2017, New Orleans, LA, USA, March 5-9, 2017, pp. 1173-1177, 2017, IEEE, 978-1-5090-4117-6. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
38 | Takahiro Nishimura, Jacir Luiz Bordim, Yasuaki Ito, Koji Nakano |
Accelerating the Smith-Waterman Algorithm Using Bitwise Parallel Bulk Computation Technique on GPU. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IPDPS Workshops ![In: 2017 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPS Workshops 2017, Orlando / Buena Vista, FL, USA, May 29 - June 2, 2017, pp. 932-941, 2017, IEEE Computer Society, 978-1-5386-3408-0. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
38 | William B. Yates, Edward C. Keedwell |
Clustering of hyper-heuristic selections using the Smith-Waterman algorithm for offline learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
GECCO (Companion) ![In: Genetic and Evolutionary Computation Conference, Berlin, Germany, July 15-19, 2017, Companion Material Proceedings, pp. 119-120, 2017, ACM, 978-1-4503-4939-0. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
38 | Kazuki Yasui, Fumihiko Ino |
Accelerating scoring computation of Smith-Waterman algorithm with mixed word length. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIBM ![In: 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017, Kansas City, MO, USA, November 13-16, 2017, pp. 1935-1940, 2017, IEEE Computer Society, 978-1-5090-3050-7. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
38 | Karl Buhagiar, Owen Casha, Ivan Grech, Edward Gatt, Joseph Micallef |
Hardware implementation of efficient path reconstruction for the Smith-Waterman algorithm. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoDIT ![In: 4th International Conference on Control, Decision and Information Technologies, CoDIT 2017, Barcelona, Spain, April 5-7, 2017, pp. 1113-1116, 2017, IEEE, 978-1-5090-6465-6. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
38 | Enzo Rucci, Carlos García 0001, Guillermo Botella, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías |
First Experiences Accelerating Smith-Waterman on Intel's Knights Landing Processor. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ICA3PP ![In: Algorithms and Architectures for Parallel Processing - 17th International Conference, ICA3PP 2017, Helsinki, Finland, August 21-23, 2017, Proceedings, pp. 569-579, 2017, Springer, 978-3-319-65481-2. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
38 | Jesús Pérez Serrano, Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo, Manuel Ujaldón |
Smith-Waterman Acceleration in Multi-GPUs: A Performance per Watt Analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IWBBIO (2) ![In: Bioinformatics and Biomedical Engineering - 5th International Work-Conference, IWBBIO 2017, Granada, Spain, April 26-28, 2017, Proceedings, Part II, pp. 512-523, 2017, 978-3-319-56153-0. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
38 | Enzo Rucci, Carlos García 0001, Guillermo Botella, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías |
Accelerating Smith-Waterman Alignment of Long DNA Sequences with OpenCL on FPGA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IWBBIO (2) ![In: Bioinformatics and Biomedical Engineering - 5th International Work-Conference, IWBBIO 2017, Granada, Spain, April 26-28, 2017, Proceedings, Part II, pp. 500-511, 2017, 978-3-319-56153-0. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
38 | Dong-Hyeon Park, Jonathan Beaumont, Trevor N. Mudge |
Accelerating Smith-Waterman Alignment Workload with Scalable Vector Computing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CLUSTER ![In: 2017 IEEE International Conference on Cluster Computing, CLUSTER 2017, Honolulu, HI, USA, September 5-8, 2017, pp. 661-668, 2017, IEEE Computer Society, 978-1-5386-2326-8. The full citation details ...](Pics/full.jpeg) |
2017 |
DBLP DOI BibTeX RDF |
|
38 | Atef Ibrahim, Hamed Elsimary, Abdullah Aljumah |
Novel Reconfigurable Hardware Accelerator for Protein Sequence Alignment Using Smith-Waterman Algorithm. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IEICE Trans. Fundam. Electron. Commun. Comput. Sci. ![In: IEICE Trans. Fundam. Electron. Commun. Comput. Sci. 99-A(3), pp. 683-690, 2016. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
|
38 | Hurmat Ali Shah, Laiq Hasan, Insoo Koo |
Optimized and Portable FPGA-Based Systolic Cell Architecture for Smith-Waterman-Based DNA Sequence Alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Inform. and Commun. Convergence Engineering ![In: J. Inform. and Commun. Convergence Engineering 14(1), 2016. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
|
38 | Sergio Gálvez, Adis Ferusic, Francisco José Esteban 0002, Pilar Hernández, Juan Antonio Caballero, Gabriel Dorado |
Speeding-up Bioinformatics Algorithms with Heterogeneous Architectures: Highly Heterogeneous Smith-Waterman (HHeterSW). ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Comput. Biol. ![In: J. Comput. Biol. 23(10), pp. 801-809, 2016. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
|
38 | B. Ashwini, Vijay Krishna Menon, K. P. Soman |
Prediction of Malicious Domains Using Smith Waterman Algorithm. ![Search on Bibsonomy](Pics/bibsonomy.png) |
SSCC ![In: Security in Computing and Communications - 4th International Symposium, SSCC 2016, Jaipur, India, September 21-24, 2016, Proceedings, pp. 369-376, 2016, Springer, 978-981-10-2737-6. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
|
38 | Wael Abou El-Wafa, Asmaa G. Seliem, Hesham F. A. Hamed |
Hardware Acceleration of Smith-Waterman Algorithm for Short Read DNA Alignment Using FPGA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
COMPSAC Workshops ![In: 40th IEEE Annual Computer Software and Applications Conference, COMPSAC Workshops 2016, Atlanta, GA, USA, June 10-14, 2016, pp. 604-605, 2016, IEEE Computer Society. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
|
38 | Vijay Naidu, Ajit Narayanan |
Needleman-Wunsch and Smith-Waterman Algorithms for Identifying Viral Polymorphic Malware Variants. ![Search on Bibsonomy](Pics/bibsonomy.png) |
DASC/PiCom/DataCom/CyberSciTech ![In: 2016 IEEE 14th Intl Conf on Dependable, Autonomic and Secure Computing, 14th Intl Conf on Pervasive Intelligence and Computing, 2nd Intl Conf on Big Data Intelligence and Computing and Cyber Science and Technology Congress, DASC/PiCom/DataCom/CyberSciTech 2016, Auckland, New Zealand, August 8-12, 2016, pp. 326-333, 2016, IEEE Computer Society, 978-1-5090-4065-0. The full citation details ...](Pics/full.jpeg) |
2016 |
DBLP DOI BibTeX RDF |
|
38 | Enzo Rucci, Carlos García 0001, Guillermo Botella, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías |
An energy-aware performance analysis of SWIMM: Smith-Waterman implementation on Intel's Multicore and Manycore architectures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Concurr. Comput. Pract. Exp. ![In: Concurr. Comput. Pract. Exp. 27(18), pp. 5517-5537, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
38 | Daiki Okada, Fumihiko Ino, Kenichi Hagihara |
Accelerating the Smith-Waterman algorithm with interpair pruning and band optimization for the all-pairs comparison of base sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BMC Bioinform. ![In: BMC Bioinform. 16, pp. 321:1-321:15, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
38 | Xiaowen Feng, Hai Jin 0001, Ran Zheng, Lei Zhu 0002, Weiqi Dai |
Accelerating Smith-Waterman Alignment of Species-Based Protein Sequences on GPU. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Int. J. Parallel Program. ![In: Int. J. Parallel Program. 43(3), pp. 359-380, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
38 | Heba Khaled, Hossam El Deen Mostafa Faheem, Rania El-Gohary |
Design and implementation of a hybrid MPI-CUDA model for the Smith-Waterman algorithm. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Int. J. Data Min. Bioinform. ![In: Int. J. Data Min. Bioinform. 12(3), pp. 313-327, 2015. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
38 | Matthew B. Baker, Aaron Welch, Manjunath Gorentla Venkata |
Parallelizing the Smith-Waterman Algorithm Using OpenSHMEM and MPI-3 One-Sided Interfaces. ![Search on Bibsonomy](Pics/bibsonomy.png) |
OpenSHMEM ![In: OpenSHMEM and Related Technologies. Experiences, Implementations, and Technologies - Second Workshop, OpenSHMEM 2015, Annapolis, MD, USA, August 4-6, 2015. Revised Selected Papers, pp. 178-191, 2015, Springer, 978-3-319-26427-1. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
38 | Enzo Rucci, Carlos García 0001, Guillermo Botella Juan, Armando De Giusti, Marcelo R. Naiouf, Manuel Prieto-Matías |
Smith-Waterman Protein Search with OpenCL on an FPGA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
TrustCom/BigDataSE/ISPA (3) ![In: 2015 IEEE TrustCom/BigDataSE/ISPA, Helsinki, Finland, August 20-22, 2015, Volume 3, pp. 208-213, 2015, IEEE. The full citation details ...](Pics/full.jpeg) |
2015 |
DBLP DOI BibTeX RDF |
|
38 | Yongchao Liu, Bertil Schmidt |
SWAPHI: Smith-Waterman Protein Database Search on Xeon Phi Coprocessors. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/1404.4152, 2014. The full citation details ...](Pics/full.jpeg) |
2014 |
DBLP BibTeX RDF |
|
38 | Juan M. Marmolejo-Tejada, Vladimir Trujillo-Olaya, Claudia Patricia Renteria-Mejia, Jaime Velasco-Medina |
Hardware implementation of the Smith-Waterman algorithm using a systolic architecture. ![Search on Bibsonomy](Pics/bibsonomy.png) |
LASCAS ![In: IEEE 5th Latin American Symposium on Circuits and Systems, LASCAS 2014, Santiago, Chile, February 25-28, 2014, pp. 1-4, 2014, IEEE. The full citation details ...](Pics/full.jpeg) |
2014 |
DBLP DOI BibTeX RDF |
|
38 | Jaime Seguel |
Mathematics of the Design of a Parallel Mapping Assembly Algorithm - Combining Smith-Waterman and Hirschberg's LCS Methods. ![Search on Bibsonomy](Pics/bibsonomy.png) |
BIOINFORMATICS ![In: BIOINFORMATICS 2014 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, ESEO, Angers, Loire Valley, France, 3-6 March, 2014, pp. 221-226, 2014, SciTePress, 978-989-758-012-3. The full citation details ...](Pics/full.jpeg) |
2014 |
DBLP DOI BibTeX RDF |
|
38 | Yongchao Liu, Bertil Schmidt |
SWAPHI: Smith-waterman protein database search on Xeon Phi coprocessors. ![Search on Bibsonomy](Pics/bibsonomy.png) |
ASAP ![In: IEEE 25th International Conference on Application-Specific Systems, Architectures and Processors, ASAP 2014, Zurich, Switzerland, June 18-20, 2014, pp. 184-185, 2014, IEEE Computer Society, 978-1-4799-3609-0. The full citation details ...](Pics/full.jpeg) |
2014 |
DBLP DOI BibTeX RDF |
|
38 | Gianvito Urgese, Giulia Paciello, Andrea Acquaviva, Elisa Ficarra, Mariagrazia Graziano, Maurizio Zamboni |
Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimization. ![Search on Bibsonomy](Pics/bibsonomy.png) |
IWBBIO ![In: International Work-Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2014, Granada, Spain, April 7-9, 2014., pp. 1347-1358, 2014, Copicentro Editorial, 978-84-15814-84-9. The full citation details ...](Pics/full.jpeg) |
2014 |
DBLP BibTeX RDF |
|
38 | Enzo Rucci, Armando De Giusti, Marcelo R. Naiouf, Guillermo Botella Juan, Carlos García 0001, Manuel Prieto-Matías |
Smith-Waterman algorithm on heterogeneous systems: A case study. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CLUSTER ![In: 2014 IEEE International Conference on Cluster Computing, CLUSTER 2014, Madrid, Spain, September 22-26, 2014, pp. 323-330, 2014, IEEE Computer Society, 978-1-4799-5548-0. The full citation details ...](Pics/full.jpeg) |
2014 |
DBLP DOI BibTeX RDF |
|
38 | Yongchao Liu, Tuan Tu Tran, Felix Lauenroth, Bertil Schmidt |
SWAPHI-LS: Smith-Waterman Algorithm on Xeon Phi coprocessors for Long DNA Sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CLUSTER ![In: 2014 IEEE International Conference on Cluster Computing, CLUSTER 2014, Madrid, Spain, September 22-26, 2014, pp. 257-265, 2014, IEEE Computer Society, 978-1-4799-5548-0. The full citation details ...](Pics/full.jpeg) |
2014 |
DBLP DOI BibTeX RDF |
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