| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 242 | Chen Ting, H. E. Yong |
Optimal algorithms for uncovering synteny problem.  |
J. Comb. Optim.  |
2006 |
DBLP DOI BibTeX RDF |
Syntenic distance, Uncovering synteny, Optimal algorithm |
| 151 | Qian Peng, Max A. Alekseyev, Glenn Tesler, Pavel A. Pevzner |
Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes. |
WABI |
2009 |
DBLP DOI BibTeX RDF |
|
| 109 | Xinghuo Zeng, Matthew J. Nesbitt, Jian Pei, Ke Wang 0001, Ismael A. Vergara, Nansheng Chen |
OrthoCluster: a new tool for mining synteny blocks and applications in comparative genomics. |
EDBT |
2008 |
DBLP DOI BibTeX RDF |
|
| 85 | Nadia Pisanti, Marie-France Sagot |
Further Thoughts on the Syntenic Distance between Genomes. |
Algorithmica |
2002 |
DBLP DOI BibTeX RDF |
|
| 70 | Laurent Bulteau, Guillaume Fertin, Irena Rusu |
Maximal Strip Recovery Problem with Gaps: Hardness and Approximation Algorithms. |
ISAAC |
2009 |
DBLP DOI BibTeX RDF |
comparative maps, genome comparison, synteny blocks, approximation algorithms, algorithmic complexity |
| 67 | David Liben-Nowell, Jon M. Kleinberg |
Structural Properties and Tractability Results for Linear Synteny. |
CPM |
2000 |
DBLP DOI BibTeX RDF |
|
| 49 | Jongin Lee, Woonyoung Hong, Minah Cho, Mikang Sim, Daehwan Lee, Younhee Ko, Jaebum Kim |
Synteny Portal: a web-based application portal for synteny block analysis. |
Nucleic Acids Res. |
2016 |
DBLP DOI BibTeX RDF |
|
| 49 | Guénola Drillon, Alessandra Carbone, Gilles Fischer |
Combinatorics of chromosomal rearrangements based on synteny blocks and synteny packs. |
J. Log. Comput. |
2013 |
DBLP DOI BibTeX RDF |
|
| 46 | Miriah D. Meyer, Tamara Munzner, Hanspeter Pfister |
MizBee: A Multiscale Synteny Browser. |
IEEE Trans. Vis. Comput. Graph. |
2009 |
DBLP DOI BibTeX RDF |
|
| 46 | Guillaume Bourque, Yasmine Yacef, Nadia El-Mabrouk |
Maximizing Synteny Blocks to Identify Ancestral Homologs. |
Comparative Genomics |
2005 |
DBLP DOI BibTeX RDF |
|
| 27 | Chunfang Zheng, Qian Zhu 0002, David Sankoff |
Removing Noise and Ambiguities from Comparative Maps in Rearrangement Analysis. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2007 |
DBLP DOI BibTeX RDF |
rice, sorghum, synteny blocks, genome rearrangements, Maximum Weight Clique |
| 27 | Hee-Jeong Jin, Hwan-Gue Cho |
Hierarchical alignment graph for gene teams finding on whole genomes. |
SAC |
2007 |
DBLP DOI BibTeX RDF |
gene team, synteny block, whole genome, bioinformatics, hierarchical clustering |
| 27 | David Sankoff, Phil Trinh |
Chromosomal breakpoint re-use in the inference of genome sequence rearrangement. |
RECOMB |
2004 |
DBLP DOI BibTeX RDF |
Hannenhalli-Pevzner algorithm, synteny blocks, evolution, inversion, comparative genomics, breakpoints, rearrangements |
| 27 | Ela Hunt, Neil Hanlon |
SyntenyVista. |
NordiCHI |
2004 |
DBLP DOI BibTeX RDF |
cartoon scaling, synteny, visualization, genomics |
| 24 | J. Ludwig, Jan Mrázek |
OrthoRefine: automated enhancement of prior ortholog identification via synteny. |
BMC Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 24 | Sagi Snir, Yuri I. Wolf, Shelly Brezner, Eugene V. Koonin, Mike Steel |
On the Distribution of Synteny Blocks Under a Neutral Model of Genome Dynamics. |
RECOMB-CG |
2024 |
DBLP DOI BibTeX RDF |
|
| 24 | Pedro Escobar-Turriza, Luis Muñoz-Miranda, Alejandro Pereira-Santana |
Genomic-World Fungi Data: Synteny Part. |
WSDM |
2024 |
DBLP DOI BibTeX RDF |
|
| 24 | Mustafa Siddiqui, Gavin C. Conant |
POInTbrowse: orthology prediction and synteny exploration for paleopolyploid genomes. |
BMC Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 24 | Semidán Robaina-Estévez, José M. González |
Pynteny: a Python package to perform synteny-aware, profile HMM-based searches in sequence databases. |
J. Open Source Softw. |
2023 |
DBLP DOI BibTeX RDF |
|
| 24 | Fabricio Almeida-Silva, Tao Zhao, Kristian K. Ullrich, M. Eric Schranz, Yves Van de Peer |
syntenet: an R/Bioconductor package for the inference and analysis of synteny networks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 24 | Thulani Hewavithana, Chu Shin Koh, Avleen Kaur, Raymond Spiteri, Isobel Parkin, Lingling Jin |
Inference of subgenomes resulting from polyploid events using synteny based dynamic linking and maximum neighbourhood. |
BIBM |
2023 |
DBLP DOI BibTeX RDF |
|
| 24 | Karl Käther, Steffen Lemke 0002, Peter F. Stadler |
Annotation-Free Identification of Potential Synteny Anchors. |
IWBBIO (1) |
2023 |
DBLP DOI BibTeX RDF |
|
| 24 | Magnus G. Jespersen, Andrew Hayes, Mark R. Davies |
Corekaburra: pan-genome post-processing using core gene synteny. |
J. Open Source Softw. |
2022 |
DBLP DOI BibTeX RDF |
|
| 24 | Zhixia Xiao, Hon-Ming Lam |
ShinySyn: a Shiny/R application for the interactive visualization and integration of macro- and micro-synteny data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 24 | Nicolas Serge Matthieu Robert, Fatih Sarigol, Elisabeth Zieger, Oleg Simakov |
SYNPHONI: scale-free and phylogeny-aware reconstruction of synteny conservation and transformation across animal genomes. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 24 | Catherine Badel, Violette Da Cunha, Ryan Catchpole, Patrick Forterre, Jacques Oberto |
WASPS: web-assisted symbolic plasmid synteny server. |
Bioinform. |
2020 |
DBLP DOI BibTeX RDF |
|
| 24 | Zebulun Arendsee, Jing Li, Urminder Singh, Priyanka Bhandary, Arun S. Seetharam, Eve Syrkin Wurtele |
fagin: synteny-based phylostratigraphy and finer classification of young genes. |
BMC Bioinform. |
2019 |
DBLP DOI BibTeX RDF |
|
| 24 | Evgeny Polevikov, Mikhail Kolmogorov |
Synteny Paths for Assembly Graphs Comparison. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 24 | Jongin Lee, Daehwan Lee, Mikang Sim, Daehong Kwon, Juyeon Kim, Younhee Ko, Jaebum Kim |
mySyntenyPortal: an application package to construct websites for synteny block analysis. |
BMC Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
| 24 | Dang Liu, Martin Hunt, Isheng J Tsai |
Inferring synteny between genome assemblies: a systematic evaluation. |
BMC Bioinform. |
2018 |
DBLP DOI BibTeX RDF |
|
| 24 | Junkyoung Choe, Ji-Eun Kim, Bong-Woo Lee, Jeong Hee Lee, Moon Nam, Youn-Il Park, Sung-Hwan Jo |
A comparative synteny analysis tool for target-gene SNP marker discovery: connecting genomics data to breeding in Solanaceae. |
Database J. Biol. Databases Curation |
2018 |
DBLP DOI BibTeX RDF |
|
| 24 | Nga Thi Thuy Nguyen, Pierre Vincens, Hugues Roest Crollius, Alexandra Louis |
Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing. |
Nucleic Acids Res. |
2018 |
DBLP DOI BibTeX RDF |
|
| 24 | René L. Warren |
Visualizing genome synteny with xmatchview. |
J. Open Source Softw. |
2018 |
DBLP DOI BibTeX RDF |
|
| 24 | Rhys A. Farrer |
Synima: a Synteny imaging tool for annotated genome assemblies. |
BMC Bioinform. |
2017 |
DBLP DOI BibTeX RDF |
|
| 24 | Asher Haug-Baltzell, Sean A. Stephens, Sean Davey, Carlos Eduardo Scheidegger, Eric Lyons 0002 |
SynMap2 and SynMap3D: web-based whole-genome synteny browsers. |
Bioinform. |
2017 |
DBLP DOI BibTeX RDF |
|
| 24 | Chris Bryan, Gregory Guterman, Kwan-Liu Ma, Harris A. Lewin, Denis M. Larkin, Jaebum Kim, Jian Ma 0004, Marta Farre |
Synteny Explorer: An Interactive Visualization Application for Teaching Genome Evolution. |
IEEE Trans. Vis. Comput. Graph. |
2017 |
DBLP DOI BibTeX RDF |
|
| 24 | Christine Kehyayan, Gregory Butler |
SynAPhy and SynAVal: Mining a Synteny-Similarity Graph to Resolve Orthology of Proteins in Fungal Genomes. |
BIBE |
2017 |
DBLP DOI BibTeX RDF |
|
| 24 | Ashok Rajaraman, Jian Ma 0004 |
Reconstructing ancestral gene orders with duplications guided by synteny level genome reconstruction. |
BMC Bioinform. |
2016 |
DBLP DOI BibTeX RDF |
|
| 24 | Magali Semeria, Eric Tannier, Laurent Guéguen |
Probabilistic modeling of the evolution of gene synteny within reconciled phylogenies. |
BMC Bioinform. |
2015 |
DBLP DOI BibTeX RDF |
|
| 24 | Adrian M. Altenhoff, Nives Skunca, Natasha M. Glover, Clément-Marie Train, Anna Sueki, Ivana Pilizota, Kevin Gori, Bartlomiej Tomiczek, Steven Müller, Henning Redestig, Gaston H. Gonnet, Christophe Dessimoz |
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements. |
Nucleic Acids Res. |
2015 |
DBLP DOI BibTeX RDF |
|
| 24 | Param Priya Singh, Jatin Arora 0004, Hervé Isambert |
Identification of Ohnolog Genes Originating from Whole Genome Duplication in Early Vertebrates, Based on Synteny Comparison across Multiple Genomes. |
PLoS Comput. Biol. |
2015 |
DBLP DOI BibTeX RDF |
|
| 24 | Jose A. Arjona-Medina, Oswaldo Trelles |
Computational Synteny Block: A framework to identify evolutionary events. |
BIBM |
2015 |
DBLP DOI BibTeX RDF |
|
| 24 | Joseph M. E. X. Lucas, Matthieu Muffato, Hugues Roest Crollius |
PhylDiag: identifying complex synteny blocks that include tandem duplications using phylogenetic gene trees. |
BMC Bioinform. |
2014 |
DBLP DOI BibTeX RDF |
|
| 24 | Cristina G. Ghiurcuta, Bernard M. E. Moret |
Evaluating synteny for improved comparative studies. |
Bioinform. |
2014 |
DBLP DOI BibTeX RDF |
|
| 24 | Sidrah Anjum, Attya Bhatti, Asma Gul |
In-silico approaches to sequence and structure based scrutiny of nonsynonymous SNPs and synteny of ACAA2 for its implicated role in metabolomics. |
IWBBIO |
2014 |
DBLP BibTeX RDF |
|
| 24 | Jacques Oberto |
SyntTax: a web server linking synteny to prokaryotic taxonomy. |
BMC Bioinform. |
2013 |
DBLP DOI BibTeX RDF |
|
| 24 | Raja Ali, Sayyed Muhammad, Mehmood Alam Khan, Lars Arvestad |
Quantitative synteny scoring improves homology inference and partitioning of gene families. |
BMC Bioinform. |
2013 |
DBLP DOI BibTeX RDF |
|
| 24 | Yu-Lun Chen, Chien-Ming Chen, Tun-Wen Pai, Hon-Wai Leong, Ket Fah Chong |
Homologous synteny Block Detection Based on Suffix Tree Algorithms. |
J. Bioinform. Comput. Biol. |
2013 |
DBLP DOI BibTeX RDF |
|
| 24 | Ilya Minkin, Anand Patel, Mikhail Kolmogorov, Nikolay Vyahhi, Son K. Pham |
Sibelia: A Scalable and Comprehensive Synteny Block Generation Tool for Closely Related Microbial Genomes. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
| 24 | Estelle Proux-Wéra, David Armisén, Kevin P. Byrne, Kenneth H. Wolfe |
A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach. |
BMC Bioinform. |
2012 |
DBLP DOI BibTeX RDF |
|
| 24 | Kashi Vishwanath Revanna, Daniel Munro, Alvin Gao, Chi-Chen Chiu, Anil Pathak, Qunfeng Dong |
A web-based multi-genome synteny viewer for customized data. |
BMC Bioinform. |
2012 |
DBLP DOI BibTeX RDF |
|
| 24 | Anasua Sarkar, Hayssam Soueidan, Macha Nikolski |
Identification of conserved gene clusters in multiple genomes based on synteny and homology. |
BMC Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
|
| 24 | Haibao Tang, Eric Lyons 0002, Brent S. Pedersen, James C. Schnable, Andrew H. Paterson, Michael Freeling |
Screening synteny blocks in pairwise genome comparisons through integer programming. |
BMC Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
|
| 24 | Kashi Vishwanath Revanna, Chi-Chen Chiu, Ezekiel Bierschank, Qunfeng Dong |
GSV: A Web-based Genome Synteny Viewer for Customized Data. |
BMC Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
|
| 24 | Jie Lv 0002, Paul Havlak, Nicholas H. Putnam |
Constraints on genes shape long-term conservation of macro-synteny in metazoan genomes. |
BMC Bioinform. |
2011 |
DBLP DOI BibTeX RDF |
|
| 24 | Géraldine Jean, Macha Nikolski |
SyDiG: uncovering Synteny in Distant Genomes. |
Int. J. Bioinform. Res. Appl. |
2011 |
DBLP DOI BibTeX RDF |
|
| 24 | Alexis P. Yelton, Brian C. Thomas, Sheri L. Simmons, Paul Wilmes, Adam T. Zemla, Michael P. Thelen, Nicholas Justice, Jillian F. Banfield |
A Semi-Quantitative, Synteny-Based Method to Improve Functional Predictions for Hypothetical and Poorly Annotated Bacterial and Archaeal Genes. |
PLoS Comput. Biol. |
2011 |
DBLP DOI BibTeX RDF |
|
| 24 | Emmanuel Mongin, Ken Dewar, Mathieu Blanchette |
Mapping Association between Long-Range cis-Regulatory Regions and Their Target Genes Using Synteny. |
J. Comput. Biol. |
2011 |
DBLP DOI BibTeX RDF |
|
| 24 | Max A. Alekseyev, Qian Peng, Pavel A. Pevzner, Glenn Tesler |
Decoding the Genomic Architecture of Mammalian and Plant Genomes: Synteny Blocks and Large-scale Duplications. |
Commun. Inf. Syst. |
2010 |
DBLP DOI BibTeX RDF |
|
| 24 | Manfred G. Grabherr, Pamela Russell, Miriah D. Meyer, Evan Mauceli, Jessica Alföldi, Federica Di Palma, Kerstin Lindblad-Toh |
Genome-wide synteny through highly sensitive sequence alignment: Satsuma. |
Bioinform. |
2010 |
DBLP DOI BibTeX RDF |
|
| 24 | Son K. Pham, Pavel A. Pevzner |
DRIMM-Synteny: decomposing genomes into evolutionary conserved segments. |
Bioinform. |
2010 |
DBLP DOI BibTeX RDF |
|
| 24 | Peter Husemann 0002, Jens Stoye |
r2cat: synteny plots and comparative assembly. |
Bioinform. |
2010 |
DBLP DOI BibTeX RDF |
|
| 24 | Matthieu Muffato, Alexandra Louis, Charles-Edouard Poisnel, Hugues Roest Crollius |
Genomicus: a database and a browser to study gene synteny in modern and ancestral genomes. |
Bioinform. |
2010 |
DBLP DOI BibTeX RDF |
|
| 24 | Man-Ping Ng, Ismael A. Vergara, Christian Frech, Qingkang Chen, Xinghuo Zeng, Jian Pei, Nansheng Chen |
OrthoClusterDB: an online platform for synteny blocks. |
BMC Bioinform. |
2009 |
DBLP DOI BibTeX RDF |
|
| 24 | David James Sherman, Tiphaine C. Martin, Macha Nikolski, Cyril Cayla, Jean-Luc Souciet, Pascal Durrens |
Génolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes. |
Nucleic Acids Res. |
2009 |
DBLP DOI BibTeX RDF |
|
| 24 | Padmanabhan Mahadevan, John F. King, Donald Seto |
Data mining pathogen genomes using GeneOrder and CoreGenes and CGUG: gene order, synteny and in silico proteomes. |
Int. J. Comput. Biol. Drug Des. |
2009 |
DBLP DOI BibTeX RDF |
|
| 24 | Jörg Lehmann, Peter F. Stadler, Sonja J. Prohaska |
SynBlast: Assisting the analysis of conserved synteny information. |
BMC Bioinform. |
2008 |
DBLP DOI BibTeX RDF |
|
| 24 | Padmanabhan Mahadevan, Donald Seto |
Data Mining Pathogen Genomes Using GeneOrder and CoreGenes: Gene Order, Synteny, and Proteomes. |
BIOCOMP |
2008 |
DBLP BibTeX RDF |
|
| 24 | Amit U. Sinha, Jaroslaw Meller |
Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms. |
BMC Bioinform. |
2007 |
DBLP DOI BibTeX RDF |
|
| 24 | Mitrick Johns |
Compressed Synteny Plots: a Tool for Visualizing Repeated Genomic Sequences. |
BIOCOMP |
2007 |
DBLP BibTeX RDF |
|
| 24 | Vicky Choi, Chunfang Zheng, Qian Zhu 0002, David Sankoff |
Algorithms for the Extraction of Synteny Blocks from Comparative Maps. |
WABI |
2007 |
DBLP DOI BibTeX RDF |
|
| 24 | Leo Goodstadt, Chris P. Ponting |
Phylogenetic Reconstruction of Orthology, Paralogy, and Conserved Synteny for Dog and Human. |
PLoS Comput. Biol. |
2006 |
DBLP DOI BibTeX RDF |
|
| 24 | Padmanabhan Mahadevan, Donald Seto |
Comparative genomics using web-based GeneOrder to determine synteny and to function as an annotation tool. |
BIOCOMP |
2006 |
DBLP BibTeX RDF |
|
| 24 | Xiangqun H. Zheng, Fu Lu, Zhen-Yuan Wang, Fei Zhong, Jeffrey Hoover, Richard J. Mural |
Using shared genomic synteny and shared protein functions to enhance the identification of orthologous gene pairs. |
Bioinform. |
2005 |
DBLP DOI BibTeX RDF |
|
| 24 | Xiaokang Pan, Lincoln Stein, Volker Brendel |
SynBrowse: a synteny browser for comparative sequence analysis. |
Bioinform. |
2005 |
DBLP DOI BibTeX RDF |
|
| 24 | David Liben-Nowell, Jon M. Kleinberg |
Structural properties and tractability results for linear synteny. |
J. Discrete Algorithms |
2004 |
DBLP DOI BibTeX RDF |
|
| 24 | Brian J. Haas, Arthur L. Delcher, Jennifer R. Wortman, Steven Salzberg |
DAGchainer: a tool for mining segmental genome duplications and synteny. |
Bioinform. |
2004 |
DBLP DOI BibTeX RDF |
|
| 24 | Ben-Yang Liao, Yu-Jung Chang, Jan-Ming Ho, Ming-Jing Hwang |
The UniMarker (UM) method for synteny mapping of large genomes. |
Bioinform. |
2004 |
DBLP DOI BibTeX RDF |
|
| 24 | David Liben-Nowell |
Gossip is synteny: Incomplete gossip and the syntenic distance between genomes. |
J. Algorithms |
2002 |
DBLP DOI BibTeX RDF |
|
| 24 | David Liben-Nowell |
Gossip is synteny: incomplete gossip and an exact algorithm for syntenic distance. |
SODA |
2001 |
DBLP BibTeX RDF |
|
| 24 | David Sankoff, Joseph H. Nadeau |
Conserved Synteny As a Measure of Genomic Distance. |
Discret. Appl. Math. |
1996 |
DBLP DOI BibTeX RDF |
|
| 24 | Vincent Ferretti, Joseph H. Nadeau, David Sankoff |
Original Synteny. |
CPM |
1996 |
DBLP DOI BibTeX RDF |
|
| 21 | Sèverine Bérard, Anne Bergeron, Cédric Chauve, Christophe Paul |
Perfect Sorting by Reversals Is Not Always Difficult. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2007 |
DBLP DOI BibTeX RDF |
Evolution scenarios, reversals, common intervals |
| 21 | Min-Sung Kim, Choong-Hyun Sun, Jinki Kim, Gwan-Su Yi |
Whole Genome Alignment with BLAST on Grid Environment. |
CIT |
2006 |
DBLP DOI BibTeX RDF |
|
| 21 | Xiaoxu Han |
Inferring Species Phylogenies: A Microarray Approach. |
ICIC (3) |
2006 |
DBLP DOI BibTeX RDF |
|
| 21 | Pavel A. Pevzner, Glenn Tesler |
Transforming men into mice: the Nadeau-Taylor chromosomal breakage model revisited. |
RECOMB |
2003 |
DBLP DOI BibTeX RDF |
breakpoint re-use, evolution, genome rearrangements |
| 21 | Mohamed Ibrahim Abouelhoda, Enno Ohlebusch |
A Local Chaining Algorithm and Its Applications in Comparative Genomics. |
WABI |
2003 |
DBLP DOI BibTeX RDF |
|
| 21 | David Liben-Nowell |
On the Structure of Syntenic Distance. |
CPM |
1999 |
DBLP DOI BibTeX RDF |
|
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