Search results for "transcriptional"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
113	John K. Goutsias	A Hidden Markov Model for Transcriptional Regulation in Single Cells.	IEEE ACM Trans. Comput. Biol. Bioinform.	2006	DBLP DOI BibTeX RDF	stochastic biochemical systems, stochastic dynamical systems, transcriptional regulatory systems, Hidden Markov models, Monte Carlo simulation, transcriptional regulation
90	Ting Gong, Jianhua Xuan, Li Chen 0018, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke	Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information.	ISBRA	2008	DBLP DOI BibTeX RDF	Motif analysis, transcriptional modules, estrogen receptor binding, gene regulatory networks, sparse component analysis
90	Peter M. Haverty, Zhiping Weng, Ulla Hansen	Transcriptional Regulatory Networks Activated by PI3K and ERK Transduced Growth Signals in Human Glioblastoma Cells.	J. Comput. Sci. Technol.	2005	DBLP DOI BibTeX RDF	PI3K, ERK, PDGF, cis-element, transcriptional, regulatory network
87	Khwunta Kirimasthong, Aompilai Manorat, Jeerayut Chaijaruwanich, Sukon Prasitwattanaseree, Chinae Thammarongtham	Inference of Gene Regulatory Network by Bayesian Network Using Metropolis-Hastings Algorithm.	ADMA	2007	DBLP DOI BibTeX RDF	Transcriptional expression analysis, Bayesian network, Gene regulatory network, Metropolis-Hastings algorithm
67	Hsien-Da Huang, Jorng-Tzong Horng, Yi-Ming Sun, Ann-Ping Tsou, Shir-Ly Huang	Identifying Transcriptional Regulatory Sites in the Human Genome Using an Integrated Computation.	ISPAN	2004	DBLP DOI BibTeX RDF
62	Tie Wang, Jeffrey W. Touchman, Weiyi Zhang 0001, Edward B. Suh, Guoliang Xue	A Parallel Algorithm for Extracting Transcription Regulatory Network Motifs.	BIBE	2005	DBLP DOI BibTeX RDF	transcriptional regulatory network, systems biology, Network motifs
54	Mattia Zampieri, Ingrid Cifola, Dario Basso, Roberta Spinelli, Luca Beltrame, Clelia Peano, Cristina Battaglia, Silvio Bicciato	Locally Adaptive Statistical Procedures for the Integrative Analysis on Genomic and Transcriptional Data.	WILF	2007	DBLP DOI BibTeX RDF	integrative, microarray, gene expression, genomics, genotyping
54	Kai Wang 0045, Ilya Nemenman, Nilanjana Banerjee, Adam A. Margolin, Andrea Califano	Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes.	RECOMB	2006	DBLP DOI BibTeX RDF
54	Anshul Kundaje, Manuel Middendorf, Feng Gao, Chris Wiggins 0001, Christina S. Leslie	Combining Sequence and Time Series Expression Data to Learn Transcriptional Modules.	IEEE ACM Trans. Comput. Biol. Bioinform.	2005	DBLP DOI BibTeX RDF	clustering, heterogeneous data, Gene regulation
54	Yi-Ming Sun, Hsien-Da Huang, Jorng-Tzong Horng, Shir-Ly Huang, Ann-Ping Tsou	RgS-Miner: A Biological Data Warehousing, Analyzing and Mining System for Identifying Transcriptional Regulatory Sites in Human Genome.	DEXA	2004	DBLP DOI BibTeX RDF
52	Frank Emmert-Streib, Matthias Dehmer	Organizational Structure of the Transcriptional Regulatory Network of Yeast: Periodic Genes.	Complex (1)	2009	DBLP DOI BibTeX RDF	transcriptional regulatory network, periodic genes, graph theory, randomization, causality
51	Abhyudai Singh, João Pedro Hespanha	Noise suppression in auto-regulatory gene networks.	CDC	2008	DBLP DOI BibTeX RDF
41	Domitilla Del Vecchio, Shridhar Jayanthi	Retroactivity attenuation in transcriptional networks: Design and analysis of an insulation device.	CDC	2008	DBLP DOI BibTeX RDF
41	Jennifer Hallinan, Anil Wipat	Network motifs in context: An exploration of the evolution of oscillatory dynamics in transcriptional networks.	CIBCB	2008	DBLP DOI BibTeX RDF
41	M. Madan Babu	Evolutionary and Temporal Dynamics of Transcriptional Regulatory Networks.	BIOWIRE	2007	DBLP DOI BibTeX RDF	transcription and gene regulation, network, evolution, dynamics
41	Ann-Ping Tsou, Yi-Ming Sun, Chia-Lin Liu, Hsien-Da Huang, Jorng-Tzong Horng, Meng-Feng Tsai, Baw-Jhiune Liu	Biological Data Warehousing System for Identifying Transcriptional Regulatory Sites From Gene Expressions of Microarray Data.	IEEE Trans. Inf. Technol. Biomed.	2006	DBLP DOI BibTeX RDF
41	Oriane Matte-Tailliez, Joan Hérisson, Nicolas Férey, Olivier Magneau, Pierre-Emmanuel Gros, François Képès, Rachid Gherbi	Yeast Naked DNA Spatial Organization Predisposes to Transcriptional Regulation.	ICCSA (1)	2006	DBLP DOI BibTeX RDF
41	Je-Gun Joung, Sok June Oh, Byoung-Tak Zhang	Searching Transcriptional Modules Using Evolutionary Algorithms.	PPSN	2004	DBLP DOI BibTeX RDF
38	Weixiong Zhang	Data Mining Methods for Modeling Gene Expression Regulation and Their Applications.	ICDM	2006	DBLP DOI BibTeX RDF
38	Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang	Computational Characterization and Identification of Core Promoters of MicroRNA Genes in C. elegans , H. sapiens and A. thaliana.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	Chikoo Oosawa, Michael A. Savageau, Abdul Salam Jarrah, Reinhard C. Laubenbacher, Eduardo D. Sontag	Stabilizing and Destabilizing Effects of Embedding 3-Node Subgraphs on the State Space of Boolean Networks.	ACRI	2008	DBLP DOI BibTeX RDF	transcriptional regulatory networks, Thomas’s conjecture, entropy, feedback, mutual information, subgraph, feedforward, Boolean networks
36	Nilanjana Banerjee, Andrea Califano	Transcription Factor Centric Discovery of Regulatory Elements in Mammalian Genomes Using Alignment-Independent Conservation Maps.	Comparative Genomics	2006	DBLP DOI BibTeX RDF	DNA binding site analysis, reverse engineering, systems biology, pattern discovery, comparative genomics, transcriptional regulation
36	Eran Segal, Roded Sharan	A discriminative model for identifying spatial cis-regulatory modules.	RECOMB	2004	DBLP DOI BibTeX RDF	cis-regulatory module, probabilistic model, transcriptional regulation
31	Mattia Furlan, Stefano de Pretis, Mattia Pelizzola	Dynamics of transcriptional and post-transcriptional regulation.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
31	Kohei Negishi, Kengo Morohashi	Comprehensive Transcriptional Analysis Reveals Gene-specific Transcriptional Variations in a Seed Plant, Arabidopsis thaliana.	ICAART (1)	2021	DBLP DOI BibTeX RDF
31	Iain M. Dykes, Costanza Emanueli	Transcriptional and Post-transcriptional Gene Regulation by Long Non-coding RNA.	Genom. Proteom. Bioinform.	2017	DBLP DOI BibTeX RDF
31	Emanuel J. V. Gonçalves, Zrinka Raguz Nakic, Mattia Zampieri, Omar Wagih, David Ochoa, Uwe Sauer, Pedro Beltrão, Julio Saez-Rodriguez	Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast.	PLoS Comput. Biol.	2017	DBLP DOI BibTeX RDF
31	Chen Zhao, Jeffrey S. Isenberg, Aleksander S. Popel	Transcriptional and Post-Transcriptional Regulation of Thrombospondin-1 Expression: A Computational Model.	PLoS Comput. Biol.	2017	DBLP DOI BibTeX RDF
31	Zhi-Ping Liu, Canglin Wu, Hongyu Miao 0001, Hulin Wu	RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse.	Database J. Biol. Databases Curation	2015	DBLP DOI BibTeX RDF
31	Zhi-Ping Liu, Hulin Wu, Jian Zhu, Hongyu Miao 0001	Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
31	Anagha Joshi	Mammalian transcriptional hotspots are enriched for tissue specific enhancers near cell type specific highly expressed genes and are predicted to act as transcriptional activator hubs.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
31	Raffaele Fronza, Michele Tramonti, William R. Atchley, Christine Nardini	Joint Analysis of Transcriptional and post- Transcriptional Data: Searching Emergent Properties in Brain Tumor Samples.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
31	Marta Biasiolo, Mattia Forcato, Lino Possamai, Francesco Ferrari, Luca Agnelli, Marta Lionetti, Katia Todoerti, Antonino Neri, Massimo Marchiori, Stefania Bortoluzzi, Silvio Bicciato	Critical Analysis of Transcriptional and Post-Transcriptional Regulatory Networks in Multiple Myeloma.	Pacific Symposium on Biocomputing	2010	DBLP BibTeX RDF
31	John E. Reid, Sascha Ott, Lorenz Wernisch	Transcriptional programs: Modelling higher order structure in transcriptional control.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
31	Lorenz Bülow, Stefan Engelmann, Martin Schindler, Reinhard Hehl	AthaMap, integrating transcriptional and post-transcriptional data.	Nucleic Acids Res.	2009	DBLP DOI BibTeX RDF
31	Gaëlle Lelandais, Yann Saint-Georges, Colette Geneix, Liza Al-Shikhley, Geneviève Dujardin, Claude Jacq	Spatio-Temporal Dynamics of Yeast Mitochondrial Biogenesis: Transcriptional and Post-Transcriptional mRNA Oscillatory Modules.	PLoS Comput. Biol.	2009	DBLP DOI BibTeX RDF
31	Tommy Kaplan	From DNA sequence to chromatin dynamics : computational analysis of transcriptional regulation (Computational analysis of transcriptional regulation.; ניתוח חישובי של בקרת שעתוק.; מרצף הדנ"א ועד דינמיקה של כרומטין.).		2008	RDF
28		Transcriptional Networks.	Encyclopedia of Database Systems	2009	DBLP DOI BibTeX RDF
28	Cheng-Long Chuang, Chung-Ming Chen, Joe-Air Jiang	Infer Genetic/Transcriptional Regulatory Networks by Recognition of Microarray Gene Expression Patterns Using Adaptive Neuro-Fuzzy Inference Systems.	Fuzzy Systems in Bioinformatics and Computational Biology	2009	DBLP DOI BibTeX RDF
28	Xiuwei Zhang, Bernard M. E. Moret	Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models.	WABI	2009	DBLP DOI BibTeX RDF
28	Peng Wei 0005, Wei Pan	Incorporating Gene Functions into Regression Analysis of DNA-Protein Binding Data and Gene Expression Data to Construct Transcriptional Networks.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	Shrinkage estimator, Stratified analysis, Microarray, Transcription factor, LASSO
28	Denis Smirnov, Vivian G. Cheung	Disruption of a Transcriptional Regulatory Pathway Contributes to Phenotypes in Carriers of Ataxia Telangiectasia.	RECOMB	2008	DBLP DOI BibTeX RDF
28	Yun Xiong, Guangyong Zheng, Qing Yang, Yangyong Zhu	An Agent-Based Approach to Mine Transcriptional Regulatory Elements.	Web Intelligence/IAT Workshops	2008	DBLP DOI BibTeX RDF
28	Xiuwei Zhang, Maryam Zaheri, Bernard M. E. Moret	Using Phylogenetic Relationships to Improve the Inference of Transcriptional Regulatory Networks.	BMEI (1)	2008	DBLP DOI BibTeX RDF	phylogenetic relationships, maximum likelihood, dynamic Bayesian networks, regulatory networks
28	Xiuwei Zhang, Bernard M. E. Moret	Boosting the Performance of Inference Algorithms for Transcriptional Regulatory Networks Using a Phylogenetic Approach.	WABI	2008	DBLP DOI BibTeX RDF
28	Jeerayut Chaijaruwanich, Jamlong Khamphachua, Sukon Prasitwattanaseree, Saradee Warit, Prasit Palittapongarnpim	Application of Factor Analysis on Mycobacterium Tuberculosis Transcriptional Responses for Drug Clustering, Drug Target, and Pathway Detections.	ADMA	2006	DBLP DOI BibTeX RDF
28	Sara Hooshangi, Stephan Thiberge, Ron Weiss	Noise Propagation in Transcriptional Cascades.	CSB Workshops	2005	DBLP DOI BibTeX RDF
26	Oscar Harari, Luis Javier Herrera, Igor Zwir	A Hybrid Promoter Analysis Methodology for Prokaryotic Genomes.	Fuzzy Systems in Bioinformatics and Computational Biology	2009	DBLP DOI BibTeX RDF
26	Tali Raveh-Sadka, Michal Levo, Eran Segal	Incorporating Nucleosomes into Thermodynamic Models of Transcription Regulation.	RECOMB	2009	DBLP DOI BibTeX RDF
26	Hojung Nam, Ki Young Lee, Doheon Lee	Identification of temporal association rules from time-series microarray data set: temporal association rules.	DTMBIO	2008	DBLP DOI BibTeX RDF	data mining, association rule mining, gene expression
26	Yanxin Shi, Itamar Simon, Tom M. Mitchell, Ziv Bar-Joseph	A Combined Expression-Interaction Model for Inferring the Temporal Activity of Transcription Factors.	RECOMB	2008	DBLP DOI BibTeX RDF
26	Carito Guziolowski, Jeremy Gruel, Ovidiu Radulescu, Anne Siegel	Curating a Large-Scale Regulatory Network by Evaluating Its Consistency with Expression Datasets.	CIBB	2008	DBLP DOI BibTeX RDF
26	Adam T. Szafran, Marco Marcelli, Michael A. Mancini	High throughput multiplex image analyses for androgen receptor function.	ISBI	2008	DBLP DOI BibTeX RDF
26	Ozy Sjahputera, James M. Keller, J. Wade Davis, Kristen H. Taylor, Farahnaz Rahmatpanah, Huidong Shi, Derek Anderson, Samuel Blisard, Robert H. Luke III, Mihail Popescu, Gerald C. Arthur, Charles William Caldwell	Relational Analysis of CpG Islands Methylation and Gene Expression in Human Lymphomas Using Possibilistic C-Means Clustering and Modified Cluster Fuzzy Density.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF	cluster density, clustering, fuzzy sets, microarray, expression, Methylation
26	Oscar Harari, Cristina Rubio-Escudero, Patricio Traverso, Marcelo Santos, Igor Zwir	Learning Robust Dynamic Networks in Prokaryotes by Gene Expression Networks Iterative Explorer (GENIE).	NICSO	2007	DBLP DOI BibTeX RDF
26	Oscar Harari, Igor Zwir	Dissecting network motifs by identifying promoter features that govern differential gene expression.	SCSC	2007	DBLP BibTeX RDF
26	Rocío Romero-Záliz, Oscar Harari, Cristina Rubio-Escudero, Igor Zwir	Identifying the Promoter Features Governing Differential Kinetics of Co-regulated Genes Using Fuzzy Expressions.	FUZZ-IEEE	2007	DBLP DOI BibTeX RDF
26	Huimin Geng, Javeed Iqbal, Xutao Deng, Wing C. Chan, Hesham H. Ali	Virtual CGH: Prediction of Novel Regions of Chromosomal Alterations in Tumor from Gene Expression Profiling.	HICSS	2007	DBLP DOI BibTeX RDF
26	Pierre-Yves Bourguignon, Vincent Danos, François Képès, Serge Smidtas, Vincent Schächter	Property-Driven Statistics of Biological Networks.	Trans. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
26	Mengxia Zhu, Qishi Wu, Yunfeng Yang, Jizhong Zhou	A New Approach to Identify Functional Modules Using Random Matrix Theory.	CIBCB	2006	DBLP DOI BibTeX RDF
26	Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli	An Interaction-Dependent Model for Transcription Factor Binding.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
26	Jun Hu, Jing Zhang	The Cluster Distribution of Regulatory Motifs of Transcription in Yeast Introns.	ICIC (2)	2005	DBLP DOI BibTeX RDF
26	Yuji Kawada, Yasubumi Sakakibara	Discriminative Discovery of Transcription Factor Binding Sites from Location Data.	CSB	2005	DBLP DOI BibTeX RDF
26	Dino Franklin, Ivan da Silva Sendin	Analysis of Structure Prediction Tools in Mutated MeCP-2.	BSB	2005	DBLP DOI BibTeX RDF
26	Alexis J. Battle, Eran Segal, Daphne Koller	Probabilistic discovery of overlapping cellular processes and their regulation.	RECOMB	2004	DBLP DOI BibTeX RDF	cellular processes, gene regulation, probabilistic relational models
26	Vladimir Filkov, Nameeta Y. Shah	Inferring Cis-region Hierarchies from Patterns in Time-Course Gene Expression Data	Regulatory Genomics	2004	DBLP DOI BibTeX RDF
26	Chen-Hsiang Yeang, Tommi S. Jaakkola	Physical network models and multi-source data integration.	RECOMB	2003	DBLP DOI BibTeX RDF	data fusion, physical models, regulatory networks
26	Mathieu Blanchette	A comparative analysis method for detecting binding sites in coding regions.	RECOMB	2003	DBLP DOI BibTeX RDF
26	Patrick C. H. Ma, Keith C. C. Chan	Discovering Clusters in Gene Expression Data Using Evolutionary Approach.	ICTAI	2003	DBLP DOI BibTeX RDF
23	Chengpeng Bi	A Monte Carlo EM Algorithm for De Novo Motif Discovery in Biomolecular Sequences.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	Monte Carlo EM, multiple sequence alignment, motif discovery, transcriptional regulation, Expectation maximization (EM)
23	Qi Wang, Shiwei Yan, Shengjun Liu, Xian Li	Frequency Domain Analysis of a Stochastic Biological Network Motif with Delay.	Complex (2)	2009	DBLP DOI BibTeX RDF	Intrinsic and extrinsic sources, transcriptional and translational time delay, frequency domain analysis, negative feedback
23	Nasimul Noman, Hitoshi Iba	Inferring Gene Regulatory Networks using Differential Evolution with Local Search Heuristics.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF	Medicine and science, Gene regulatory system, Global optimization, Memetic algorithm, Inverse problems, Biology and genetics, Microarray data, Transcriptional regulation
23	Ranajit Das, Sushmita Mitra, Haider Banka, Subhasis Mukhopadhyay	Evolutionary Biclustering with Correlation for Gene Interaction Networks.	PReMI	2007	DBLP DOI BibTeX RDF	transcriptional regulatory network extraction, gene interaction network, Bioinformatics, gene expression profile
23	Chengpeng Bi	Multiple Sequence Local Alignment Using Monte Carlo EM Algorithm.	ISBRA	2007	DBLP DOI BibTeX RDF	Monte Carlo EM, Multiple Sequence Local Alignment, Motif Discovery, Transcriptional Regulation, Expectation Maximization (EM)
15	Guanqun Yao, Jing Luo, Ting Zou, Jing Li, Shuang Hu, Langxiong Yang, Xinrong Li, Yu Tian, Yuqi Zhang, Kun Feng, Yong Xu, Pozi Liu	Transcriptional patterns of the cortical Morphometric Inverse Divergence in first-episode, treatment-naïve early-onset schizophrenia.	NeuroImage	2024	DBLP DOI BibTeX RDF
15	Huanhuan Liu, Qinwei Chen, Jintao Guo, Ying Zhou, Zhiyu You, Jun Ren, Yuanyuan Zeng, Jing Yang, Jialiang Huang, Qiyuan Li	Epigenome-augmented eQTL-hotspots reveal genome-wide transcriptional programs in 36 human tissues.	Briefings Bioinform.	2024	DBLP DOI BibTeX RDF
15	Thomas P. Wytock, Adilson E. Motter	Cell reprogramming design by transfer learning of functional transcriptional networks.	CoRR	2024	DBLP DOI BibTeX RDF
15	Xing Guo, Jie Li, Qian Su, Jiajun Song, Cai Cheng, Xu Chu, Rui Zhao 0027	Transcriptional correlates of frequency-dependent brain functional activity associated with symptom severity in degenerative cervical myelopathy.	NeuroImage	2023	DBLP DOI BibTeX RDF
15	Yishu Wang 0003, Juan Qi, Dongmei Ai	DPADM: a novel algorithm for detecting drug-pathway associations based on high-throughput transcriptional response to compounds.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
15	Siqi Gao, Hanwen Zhu, Kangwen Cai, Leiqin Liu, Zhiqiang Zhang, Yi Ding, Yaochen Xu, Xiaoqi Zheng, Jiantao Shi	TRAmHap: accurate prediction of transcriptional activity from DNA methylation haplotypes in bisulfite-sequencing data.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
15	Blanca Lacruz-Pleguezuelos, Oscar Piette, Marco Garranzo, David Pérez-Serrano, Jelena Milesevic, Isabel Espinosa-Salinas, Ana Ramírez de Molina, Teresa Laguna, Enrique Carrillo-de Santa Pau	FooDrugs: a comprehensive food-drug interactions database with text documents and transcriptional data.	Database J. Biol. Databases Curation	2023	DBLP DOI BibTeX RDF
15	Yuxin Zhang, Jie Jiang, Jiongming Ma, Zhen Wei, Yue Wang 0060, Bowen Song, Jia Meng, Guifang Jia, João Pedro de Magalhães, Daniel J. Rigden, Daiyun Hang, Kunqi Chen	DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
15	Menglin Zheng, Satoshi Okawa, Miren Bravo, Fei Chen, María L. Martínez-Chantar, Antonio del Sol	ChemPert: mapping between chemical perturbation and transcriptional response for non-cancer cells.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
15	Junhong Huang, Wu-Jian Zheng, Ping Zhang, Qiao Lin, Zhi-Rong Chen, Jia-Jia Xuan, Chang Liu, Di Wu, Qiaojuan Huang, Ling-Ling Zheng, Shurong Liu, Keren Zhou 0002, Liang-Hu Qu, Bin Li 0060, Jian-Hua Yang	ChIPBase v3.0: the encyclopedia of transcriptional regulations of non-coding RNAs and protein-coding genes.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
15	Kai-Pu Chen, Chia-Lang Hsu, Yen-Jen Oyang, Hsuan-Cheng Huang, Hsueh-Fen Juan	BIC: a database for the transcriptional landscape of bacteria in cancer.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
15	Antonios Klonizakis, Christoforos Nikolaou, Thomas Graf	SEGCOND predicts putative transcriptional condensate-associated genomic regions by integrating multi-omics data.	Bioinform.	2023	DBLP DOI BibTeX RDF
15	Anna Wierczeiko, Stefan Pastore, Stefan Mündnich, Anne M. Busch, Vincent Dietrich, Mark Helm, Tamer Butto, Susanne Gerber	NanopoReaTA: a user-friendly tool for nanopore-seq real-time transcriptional analysis.	Bioinform.	2023	DBLP DOI BibTeX RDF
15	Junmin Wang, Steven Novick	DOSE-L1000: unveiling the intricate landscape of compound-induced transcriptional changes.	Bioinform.	2023	DBLP DOI BibTeX RDF
15	Sumeer Ahmad Khan, Alberto Maillo, Vincenzo Lagani, Robert Lehmann 0002, Narsis A. Kiani, David Gomez-Cabrero, Jesper Tegnér	Reusability report: Learning the transcriptional grammar in single-cell RNA-sequencing data using transformers.	Nat. Mac. Intell.	2023	DBLP DOI BibTeX RDF
15	Tzu-Hsien Yang, Yu-Huai Yu, Sheng-Hang Wu, Fang-Yuan Zhang	CFA: An explainable deep learning model for annotating the transcriptional roles of cis-regulatory modules based on epigenetic codes.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
15	Alvaro Fletcher, Zeba Wunderlich, Germán A. Enciso	Shadow enhancers mediate trade-offs between transcriptional noise and fidelity.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
15	Yahel Yedidya, Daniel Davis, Yotam Drier	SARS-CoV-2 infection perturbs enhancer mediated transcriptional regulation of key pathways.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
15	Ruihao Li 0005, Jordan C. Rozum, Morgan M. Quail, Mohammad N. Qasim, Suzanne S. Sindi, Clarissa J. Nobile, Réka Albert, Aaron D. Hernday	Inferring gene regulatory networks using transcriptional profiles as dynamical attractors.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
15	Abdus Samad, Md. Anowar Khasru Parvez, Md. Amdadul Huq, Md. Shahedur Rahman	Transcriptional expression and prognostic roles of MCM7 in human bladder, breast, and lung cancers: a multi-omics analysis.	Netw. Model. Anal. Health Informatics Bioinform.	2023	DBLP DOI BibTeX RDF
15	Dylan Hirsch, Theodore W. Grunberg, Domitilla Del Vecchio	Error Bound for Hill-Function Approximations in a Class of Stochastic Transcriptional Network Models.	CDC	2023	DBLP DOI BibTeX RDF
15	Ulysse Herbach	Harissa: Stochastic Simulation and Inference of Gene Regulatory Networks Based on Transcriptional Bursting.	CMSB	2023	DBLP DOI BibTeX RDF
15	Saloni Mahatma, Lisa Van den Broeck, Nicholas Morffy, Max V. Staller, Lucia C. Strader, Rosangela Sozzani	Prediction and functional characterization of transcriptional activation domains.	CISS	2023	DBLP DOI BibTeX RDF
15	Pedro H. A. Barros, Waldeyr M. C. Silva, Marcelo M. Brigido	transcAnalysis: A Snakemake Pipeline for Differential Expression and Post-transcriptional Modification Analysis.	BSB	2023	DBLP DOI BibTeX RDF
15	Sue Yu, Jia Li 0039, Guanxu Ji, Zhen Long Ng, Jiamin Siew, Wan Ning Lo, Ying Ye, Yuan Yuan Chew, Yun Chau Long, Wensheng Zhang, Ernesto Guccione, Yuin Han Loh, Zhi-Hong Jiang, Henry Yang, Qiang Wu	Npac Is A Co-factor of Histone H3K36me3 and Regulates Transcriptional Elongation in Mouse Embryonic Stem Cells.	Genom. Proteom. Bioinform.	2022	DBLP DOI BibTeX RDF
15	Zhiting Wei, Sheng Zhu, Xiaohan Chen, Chen-Yu Zhu, Bin Duan, Qi Liu 0019	DrSim: Similarity Learning for Transcriptional Phenotypic Drug Discovery.	Genom. Proteom. Bioinform.	2022	DBLP DOI BibTeX RDF