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Venues (Conferences, Journals, ...)
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GrowBag graphs for keyword ? (Num. hits/coverage)
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The graphs summarize 29 occurrences of 23 keywords
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Results
Found 603 publication records. Showing 603 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
83 | Roberto T. Arrial, Roberto C. Togawa, Marcelo M. Brigido |
Outlining a Strategy for Screening Non-coding RNAs on a Transcriptome Through Support Vector Machines. |
BSB |
2007 |
DBLP DOI BibTeX RDF |
ncRNA, Paracoccidioides brasiliensis, machine learning, Support Vector Machines, non-coding RNA, transcriptome |
48 | Judith Zimmermann, Zsuzsanna Lipták, Scott Hazelhurst |
A Method for Evaluating the Quality of String Dissimilarity Measures and Clustering Algorithms for EST Clustering. |
BIBE |
2004 |
DBLP DOI BibTeX RDF |
string similarity and dissimilarity measures, EST clustering, benchmarks, simulated data, transcriptome |
46 | Zeynep H. Gümüs, Fernando Siso-Nadal, Ada Gjrezi, Paul McDonagh, Iya Khalil, Paraskevi Giannakakou, Harel Weinstein |
Quantification and Analysis of Combination Drug Synergy in High-Throughput Transcriptome Studies. |
BIBE |
2010 |
DBLP DOI BibTeX RDF |
combination index, drug synergy, reverse engineering, ovarian cancer, transcriptome |
37 | Thiago M. Venancio, Ricardo DeMarco, Katia C. P. Oliveira, Ana Carolina Quirino Simoes, Aline Maria da Silva, Sergio Verjovski-Almeida |
Genomics and Gene Expression Management Tools for the Schistosoma Mansoni cDNA Microarray Project. |
BSB |
2005 |
DBLP DOI BibTeX RDF |
|
37 | Akira Sato, Noriyuki Morita, Tetsushi Sadakata, Fumio Yoshikawa, Yoko Shiraishi-Yamaguchi, JinHong Huang, Satoshi Shoji, Mineko Tomomura, Yumi Sato, Emiko Suga, Yukiko Sekine, Aiko Kitamura, Yasuyuki Shibata, Teiichi Furuichi |
Deciphering the Genetic Blueprint of Cerebellar Development by the Gene Expression Profiling Informatics. |
ICONIP |
2004 |
DBLP DOI BibTeX RDF |
|
35 | Vincent Lacroix, Michael Sammeth, Roderic Guigó, Anne Bergeron |
Exact Transcriptome Reconstruction from Short Sequence Reads. |
WABI |
2008 |
DBLP DOI BibTeX RDF |
|
35 | Doron Lipson, Peter Webb, Zohar Yakhini |
Designing Specific Oligonucleotide Probes for the Entire S. cerevisiae Transcriptome. |
WABI |
2002 |
DBLP DOI BibTeX RDF |
|
33 | Yunfeng Wang |
Transcriptome and genome analysis based on alignment-free protocols. (L'analyse du génome et du transcriptome par des méthodes sans référence). |
|
2021 |
RDF |
|
33 | Xinxia Peng, Jean Thierry-Mieg, Danielle Thierry-Mieg, Andrew Nishida, Lenore Pipes, Marjan Bozinoski, Matthew J. Thomas, Sara Kelly, Jeffrey M. Weiss, Muthuswamy Raveendran, Donna M. Muzny, Richard A. Gibbs, Jeffrey Rogers, Gary P. Schroth, Michael G. Katze, Christopher E. Mason |
Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR). |
Nucleic Acids Res. |
2015 |
DBLP DOI BibTeX RDF |
|
33 | Jia Li 0007 |
Identifier les variations conduisant au cancer dans le génome non codant et du transcriptome. (Identifying cancer driver variations in the non-coding genome and transcriptome). |
|
2015 |
RDF |
|
33 | Bogdan Mirauta |
Transcriptome analysis from high-throughput sequencing count data. (Etude du transcriptome à partir de données de comptages issues de séquençage haut débit). |
|
2014 |
RDF |
|
33 | Isaac S. Kohane, Vladimir I. Valtchinov |
Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome. |
Bioinform. |
2012 |
DBLP DOI BibTeX RDF |
|
33 | Isaac S. Kohane, Vladimir I. Valtchinov |
Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome. |
Bioinform. |
2012 |
DBLP DOI BibTeX RDF |
|
33 | Khaled Khelif |
Web sémantique et Mémoire d expériences sur l analyse du transcriptome. (Semantic web and experiments memory for the transcriptome analysis). |
|
2006 |
RDF |
|
29 | Khaled Khelif, Rose Dieng-Kuntz, Pascal Barbry |
MEAT: an experiment memory for interpreting DNA microarray analyses. |
K-CAP |
2005 |
DBLP DOI BibTeX RDF |
corporate semantic web, knowledge management, NLP, DNA microarray, annotation tool, transcriptome |
18 | Doulaye Dembélé |
Microarray Data Analysis Using Fuzzy Clustering Algorithms. |
Fuzzy Systems in Bioinformatics and Computational Biology |
2009 |
DBLP DOI BibTeX RDF |
|
18 | Salih Tuna, Mahesan Niranjan |
Cross-Platform Analysis with Binarized Gene Expression Data. |
PRIB |
2009 |
DBLP DOI BibTeX RDF |
Cross-platform analysis, binary gene expression, classification |
18 | Tulio C. Silva, Pedro A. Berger, Roberto T. Arrial, Roberto C. Togawa, Marcelo M. Brigido, Maria Emília M. T. Walter |
SOM-PORTRAIT: Identifying Non-coding RNAs Using Self-Organizing Maps. |
BSB |
2009 |
DBLP DOI BibTeX RDF |
|
18 | Sujimarn Suwannaroj, Mahesan Niranjan |
Enhancing Automatic Construction of Gene Subnetworks by Integrating Multiple Sources of Information. |
J. Signal Process. Syst. |
2008 |
DBLP DOI BibTeX RDF |
bioinformatics, microarray analysis, literature mining |
18 | Miki Hirabayashi, Hirotada Ohashi, Tai Kubo |
Experimental analysis of the basic idea on the transcription-based diagnostic automata controlled by programmed molecules. |
Nat. Comput. |
2008 |
DBLP DOI BibTeX RDF |
Nucleic acid detection systems, Molecular programming, Autonomous diagnostic devices, Molecular circuits, DNA computing, Biomolecular computing |
18 | Derek Greene, Kenneth Bryan, Padraig Cunningham |
Parallel integration of heterogeneous genome-wide data sources. |
BIBE |
2008 |
DBLP DOI BibTeX RDF |
|
18 | Juan M. Corchado, Juan Francisco de Paz |
Using CBR Systems for Leukemia Classification. |
HAIS |
2008 |
DBLP DOI BibTeX RDF |
dendogram, leukemia classification, data mining, Case-based Reasoning |
18 | Miki Hirabayashi, Hirotada Ohashi, Tai Kubo |
Experimental Validation of the Transcription-Based Diagnostic Automata with Quantitative Control by Programmed Molecules. |
DNA |
2007 |
DBLP DOI BibTeX RDF |
nucleic acid detection systems, molecular programming, autonomous diagnostic devices, molecular circuits, DNA computing, Biomolecular computing |
18 | Angelica Lindlöf, Marcus Bräutigam, Aakash Chawade, Björn Olsson, Olof Olsson |
Identification of Cold-Induced Genes in Cereal Crops and Arabidopsis Through Comparative Analysis of Multiple EST Sets. |
BIRD |
2007 |
DBLP DOI BibTeX RDF |
|
18 | Magnólia A. Campos, Flávia B. Silva, Marilia S. Silva, Érika E. V. S. Albuquerque, Alexandre M. do Amaral, Cristiane C. Teixeira, Ângela Mehta, Maria Fátima G. Sá |
Identification of the Putative Class 3 R Genes in Coffea arabica from CafEST Database. |
BSB |
2007 |
DBLP DOI BibTeX RDF |
coffee tree, plant resistance, NBS, LRR, TIR |
18 | Márcia A. Inda, Adam Belloum, Marco Roos, Dmitry Vasunin, Cees T. A. M. de Laat, Louis O. Hertzberger, Timo M. Breit |
Interactive Workflows in a Virtual Laboratory for e-Bioscience: The SigWin-Detector Tool for Gene Expression Analysis. |
e-Science |
2006 |
DBLP DOI BibTeX RDF |
|
18 | Shibin Qiu, Cundong Yang, Terran Lane |
Efficient Target Detection for RNA Interference. |
GPC |
2006 |
DBLP DOI BibTeX RDF |
|
18 | Hans A. Kestler, Wolfgang Lindner 0002, André Müller |
Learning and Feature Selection Using the Set Covering Machine with Data-Dependent Rays on Gene Expression Profiles. |
ANNPR |
2006 |
DBLP DOI BibTeX RDF |
|
18 | Shibin Qiu, Terran Lane |
Phase Transitions in Gene Knockdown Networks of Transitive RNAi. |
International Conference on Computational Science (2) |
2006 |
DBLP DOI BibTeX RDF |
|
18 | Manuel Middendorf, Anshul Kundaje, Mihir Shah, Yoav Freund, Chris Wiggins 0001, Christina S. Leslie |
Motif Discovery Through Predictive Modeling of Gene Regulation. |
RECOMB |
2005 |
DBLP DOI BibTeX RDF |
|
18 | Mathew J. Palakal, Sven Rahmann, Birong Liao |
Editorial message: special track on bioinformatics. |
SAC |
2005 |
DBLP DOI BibTeX RDF |
|
18 | Emilie Guérin, Gwenaëlle Marquet, Anita Burgun, Olivier Loréal, Laure Berti-Équille, Ulf Leser, Fouzia Moussouni |
Integrating and Warehousing Liver Gene Expression Data and Related Biomedical Resources in GEDAW. |
DILS |
2005 |
DBLP DOI BibTeX RDF |
|
18 | Rainer Malik, Arno Siebes |
CONAN: An Integrative System for Biomedical Literature Mining. |
EPIA |
2005 |
DBLP DOI BibTeX RDF |
|
18 | Maurício de Alvarenga Mudado, Estevam Bravo-Neto, José Miguel Ortega |
Tests of Automatic Annotation Using KOG Proteins and ESTs from 4 Eukariotic Organisms. |
BSB |
2005 |
DBLP DOI BibTeX RDF |
|
18 | Fang-Rong Hsu, Hwan-You Chang, Yaw-Ling Lin, Yin-Te Tsai, Hui-Ling Peng, Ying Tsong Chen, Che Feng Chen, Chia Yang Cheng, Chia-Hung Liu, Min Yao Shih |
Genome-Wide Alternative Splicing Events Detection through Analysis of Large Scale ESTs. |
BIBE |
2004 |
DBLP DOI BibTeX RDF |
|
18 | Catherine J. Hack, Jesús A. López |
An Exploration of Some Factors Affecting the Correlation of mRNA and Proteomic Data. |
KELSI |
2004 |
DBLP DOI BibTeX RDF |
|
18 | Marc Vidal |
Toward a proteome atlas for C. Elegans. |
RECOMB |
2002 |
DBLP DOI BibTeX RDF |
|
16 | Priyadarshana Ajithkumar, Gregory Gimenez, Peter A. Stockwell, Suzan Almomani, Sarah A. Bowden, Anna L. Leichter, Antonio Ahn, Sharon Pattison, Sebastian Schmeier, Frank A. Frizelle, Michael R. Eccles, Rachel V. Purcell, Euan J. Rodger, Aniruddha Chatterjee |
DNA Methylome and Transcriptome Maps of Primary Colorectal Cancer and Matched Liver Metastasis. |
Data |
2024 |
DBLP DOI BibTeX RDF |
|
16 | Musu Yuan, Hui Wan, Zihao Wang, Qirui Guo, Minghua Deng |
SPANN: annotating single-cell resolution spatial transcriptome data with scRNA-seq data. |
Briefings Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
16 | Darawan Rinchai, Tobias Brummaier, Alexandra A. Marr, Tanwir Habib, Mohammed Toufiq, Tomoshigue Kino, Francois Nosten, Souhaila Al Khodor, Annalisa Terranegra, Rose McGready, Basirudeen Syed Ahamed Kabeer, Damien Chaussabel |
A data browsing application for accessing gene and module-level blood transcriptome profiles of healthy pregnant women from high- and low-resource settings. |
Database J. Biol. Databases Curation |
2024 |
DBLP DOI BibTeX RDF |
|
16 | Yuanyuan Luo, Lerong Liu, Cheng Zhang |
Identification and analysis of diverse cell death patterns in diabetic kidney disease using microarray-based transcriptome profiling and single-nucleus RNA sequencing. |
Comput. Biol. Medicine |
2024 |
DBLP DOI BibTeX RDF |
|
16 | Lachlan Baer, Karissa Barthelson, John H. Postlethwait, David L. Adelson, Stephen M. Pederson, Michael Lardelli |
Differential allelic representation (DAR) identifies candidate eQTLs and improves transcriptome analysis. |
PLoS Comput. Biol. |
2024 |
DBLP DOI BibTeX RDF |
|
16 | Keigo Masuda, Yoshiaki Sota, Hideo Matsuda |
Accurate Detection of Fusion Genes in Long-Read Transcriptome Datasets from Multiple Cancer Cell Lines. |
ICBBB |
2024 |
DBLP DOI BibTeX RDF |
|
16 | Pratheeba Jeyananthan |
SARS-CoV-2 Diagnosis Using Transcriptome Data: A Machine Learning Approach. |
SN Comput. Sci. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Zidong Liu, Xiaoxu Chen, Pengfei Zhang, Fuyuan Li, Lingkai Zhang, Xueliang Li 0013, Tao Huang, Yi Zheng, Taiyong Yu, Tao Zhang, Wenxian Zeng, Hongzhao Lu, Yinghua Lv |
Transcriptome-wide Dynamics of m6A mRNA Methylation During Porcine Spermatogenesis. |
Genom. Proteom. Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Shutao Chen, Lin Zhang 0015, Xiangzhi Chen, Hui Liu 0024 |
FGFICA: Independent Component Analysis of Fusion Genomic Features for Mining Epi-Transcriptome Profiling Data. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Timothy R. Fallon, Tereza Calounová, Martin Mokrejs, Jing-Ke Weng, Tomás Pluskal |
transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation. |
BMC Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Roohallah Mahdi-Esferizi, Behnaz Haji Molla Hoseyni, Amir Mehrpanah, Yazdan Golzade, Ali Najafi, Fatemeh Elahian, Amin Zadeh Shirazi, Guillermo A. Gomez, Shahram Tahmasebian |
DeeP4med: deep learning for P4 medicine to predict normal and cancer transcriptome in multiple human tissues. |
BMC Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Ricardo R. Pavan, Fabiola Diniz, Samir El-Dahr, Giovane G. Tortelote |
Gene length is a pivotal feature to explain disparities in transcript capture between single transcriptome techniques. |
Frontiers Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Muhammad Adrian, Roedhy Poerwanto, Eiichi Inoue, Deden Derajat Matra |
Transcriptome Dataset of Strawberry (Fragaria × ananassa Duch.) Leaves Using Oxford Nanopore Sequencing under LED Irradiation and Application of Methyl Jasmonate and Methyl Salicylate Hormones Treatment. |
Data |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Karel K. M. Koudijs, Stefan Böhringer, Henk-Jan Guchelaar |
Validation of transcriptome signature reversion for drug repurposing in oncology. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Weixu Wang, Xiaolan Zhou, Jing Wang, Jun Yao, Haimei Wen, Yi Wang, Mingwan Sun, Chao Zhang, Wei Tao, Jiahua Zou, Ting Ni |
Approximate estimation of cell-type resolution transcriptome in bulk tissue through matrix completion. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Guoxing Cai, Wenyi Zhao, Zhan Zhou, Xun Gu |
MATTE: a pipeline of transcriptome module alignment for anti-noise phenotype-gene-related analysis. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Pablo Acera Mateos, You Zhou, Kathi Zarnack, Eduardo Eyras |
Concepts and methods for transcriptome-wide prediction of chemical messenger RNA modifications with machine learning. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Musun Park, Su-Jin Baek, Sang-Min Park, Jin-Mu Yi, Seongwon Cha |
Comparative study of the mechanism of natural compounds with similar structures using docking and transcriptome data for improving in silico herbal medicine experimentations. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | |
Correction to: kTWAS: integrating kernel machine with transcriptome-wide association studies improves statistical power and reveals novel genes. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Sheng Hu Qian, Meng-Wei Shi, Dan-Yang Wang, Justin M. Fear, Lu Chen, Yi-Xuan Tu, Hong-Shan Liu, Yuan Zhang, Shuai-Jie Zhang, Shan-Shan Yu, Brian Oliver, Zhen-Xia Chen |
Integrating massive RNA-seq data to elucidate transcriptome dynamics in Drosophila melanogaster. |
Briefings Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Walter Arancio, Nicolina Sciaraffa, Claudia Coronnello |
MBS: a genome browser annotation track for high-confident microRNA binding sites in whole human transcriptome. |
Database J. Biol. Databases Curation |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Haopeng Yu, Yiman Qi, Bibo Yang, Xiaofei Yang, Yiliang Ding |
G4Atlas: a comprehensive transcriptome-wide G-quadruplex database. |
Nucleic Acids Res. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Xiaoying Shi, Zhiguang Yu, Pengfei Ren, Xin Dong, Xuanxin Ding, Jiaming Song, Jing Zhang, Taiwen Li, Chenfei Wang |
HUSCH: an integrated single-cell transcriptome atlas for human tissue gene expression visualization and analyses. |
Nucleic Acids Res. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Lu Pan, Shaobo Shan, Roman Tremmel, Weiyuan Li, Zehuan Liao, Hangyu Shi, Qishuang Chen, Xiaolu Zhang, Xuexin Li |
HTCA: a database with an in-depth characterization of the single-cell human transcriptome. |
Nucleic Acids Res. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Mingming Lu, Yadong Zhang, Fengchun Yang, Jialin Mai, Qianwen Gao, Xiaowei Xu, Hongyu Kang, Li Hou, Yunfei Shang, Qiheng Qain, Jie Liu, Meiye Jiang, Hao Zhang, Congfan Bu, Jinyue Wang, Zhewen Zhang, Zaichao Zhang, Jingyao Zeng, Jiao Li, Jing-Fa Xiao |
TWAS Atlas: a curated knowledgebase of transcriptome-wide association studies. |
Nucleic Acids Res. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Ya Han, Yuting Wang, Xin Dong, Dongqing Sun, Zhaoyang Liu, Jiali Yue, Haiyun Wang, Taiwen Li, Chenfei Wang |
TISCH2: expanded datasets and new tools for single-cell transcriptome analyses of the tumor microenvironment. |
Nucleic Acids Res. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Alexander J. Petri, Kristoffer Sahlin |
isONform: reference-free transcriptome reconstruction from Oxford Nanopore data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Xiang Cheng, Md Amanullah, Weigang Liu, Yi Liu, Xiaoqing Pan, Honghe Zhang, Haiming Xu, Pengyuan Liu 0003, Yan Lu |
WMDS.net: a network control framework for identifying key players in transcriptome programs. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Xinran Wang, Zeyun Lu, Arjun Bhattacharya, Bogdan Pasaniuc, Nicholas Mancuso |
twas_sim, a Python-based tool for simulation and power analysis of transcriptome-wide association analysis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Hongyan Du, Guo-Wei Wei 0001, Tingjun Hou |
Multiscale Topology in Interactomic Network: From Transcriptome to Antiaddiction Drug Repurposing. |
CoRR |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Mothe Rajesh, Sheshikala Martha |
Analysis of transcriptome of single-cell RNA sequencing data using machine learning. |
Soft Comput. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Peiying Huang, Li Yan, Zhishang Li, Shuai Zhao, Yuchao Feng, Jing Zeng, Li Chen, Afang Huang, Yan Chen, Sisi Lei, Xiaoyan Huang, Yi Deng, Dan Xie, Hansu Guan, Weihang Peng, Liyuan Yu, Bojun Chen |
Potential shared gene signatures and molecular mechanisms between atherosclerosis and depression: Evidence from transcriptome data. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Chunbao Xie, Ling Zhong, Jiangrong Luo, Ji Luo, Yingmiao Wu, Shuai Zheng, Lingxi Jiang, Jianbo Zhang, Yi Shi |
Identification of mutation gene prognostic biomarker in multiple myeloma through gene panel exome sequencing and transcriptome analysis in Chinese population. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Debin Cheng, Zhao Zhang, Zhenzhou Mi, Weidong Tao, Dong Liu, Jun Fu, Hongbin Fan |
Deciphering the heterogeneity and immunosuppressive function of regulatory T cells in osteosarcoma using single-cell RNA transcriptome. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Xiang Li, Mingzhi Zheng, Jue Hu, Yuanxiao Yang, Linhuizi Lu, Qinqin Zhao, Xiaohui Fan |
Transcriptome, network analysis, and molecular docking approaches to elucidate the modes of action of Astragaloside IV against myocardial infarction with mitochondrial energy metabolism network-targeted regulation. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Onat Kadioglu, Faranak Bahramimehr, Mona Dawood, Nuha Mahmoud, Mohamed Elbadawi, Xiaohua Lu, Yagmur Bülbül, Jana Agnieszka Schulz, Lisa Krämer, Marie-Kathrin Urschel, Zoe Künzli, Leila Abdulrahman, Fadwa Aboumaachar, Lajien Kadalo, Le Van Nguyen, Sara Shaidaei, Nawal Thaher, Kathrin Walter, Karolin Christiane Besler, Andreas Spuller, Markus Munder, Henry Johannes Greten, Thomas Efferth |
A drug repurposing approach for individualized cancer therapy based on transcriptome sequencing and virtual drug screening. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Tongtong Ren, Shan Huang, Qiaoming Liu, Guohua Wang |
scWECTA: A weighted ensemble classification framework for cell type assignment based on single cell transcriptome. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Zihao Zhao, Qianqian Yan, Li Fang, Guangpu Li, Yong Liu, Jia Li, Shaokang Pan, Sijie Zhou, Jiayu Duan, Dongwei Liu, Zhangsuo Liu |
Identification of urinary extracellular vesicles differentially expressed RNAs in diabetic nephropathy via whole-transcriptome integrated analysis. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Lili Dong, Jianan Wang, Guohua Wang |
ASAS-EGB: A statistical framework for estimating allele-specific alternative splicing events using transcriptome data. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Md. Ali Hossain, Tania Akter Asa, Md Rabiul Auwul, Md. Aktaruzzaman, Md. Mahfizur Rahman, M. Zahidur Rahman, Mohammad Ali Moni |
The pathogenetic influence of smoking on SARS-CoV-2 infection: Integrative transcriptome and regulomics analysis of lung epithelial cells. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Yunkun Qu, Yingguang Wang, Shanxi Wang, Xiaojun Yu, Yi He, Rui Lu, Sheng Chen, Cheng Meng, Hanqing Xu, Wenbin Pei, Bowei Ni, Rui Zhang, Xiaojian Huang, Hongbo You |
A comprehensive analysis of single-cell RNA transcriptome reveals unique SPP1+ chondrocytes in human osteoarthritis. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Dong Zhang, Rui Sun, Chenyu Di, Lin Li, Faming Zhao, Yu Han, Wenjie Zhang |
Microdissection of cancer-associated fibroblast infiltration subtypes unveils the secreted SERPINE2 contributing to immunosuppressive microenvironment and immuotherapeutic resistance in gastric cancer: A large-scale study integrating bulk and single-cell transcriptome profiling. |
Comput. Biol. Medicine |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Cristiano Guttà, Christoph Morhard, Markus Rehm 0001 |
Applying a GAN-based classifier to improve transcriptome-based prognostication in breast cancer. |
PLoS Comput. Biol. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Xiaoshu Zhu, Liyuan Pang, Xiaojun Ding, Wei Lan, Shuang Meng, Xiaoqing Peng |
A Gene Correlation Measurement Method for Spatial Transcriptome Data Based on Partitioning and Distribution. |
J. Comput. Biol. |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Hikari Okada, Riei Tsurumi, Miu Awaki, Shuichi Kaneko |
Identifying New Physiological Functions of Peretinoin from RNA Transcriptome Analysis. |
SoMeT |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Shizheng Qiu, Yadong Wang, Ying Zhang, Yang Hu 0008 |
Identification of risk genes and biological pathways influencing myopia via transcriptome association study and biomedical ontology methods. |
BIBM |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Yunyun Su, Feifei Cui, Shiyu Yan, Quan Zou 0001, Chen Cao, Zilong Zhang |
Human-Spa: An Online Platform Based on Spatial Transcriptome Data for Diseases of Human Systems. |
BIBM |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Weiguo Li, Junchi Ma, Cuiyuan Li, Ting Yu, Xuefeng Cui |
Using Deep Learning to Classify Full-Length Transcriptome Sequences. |
BIBM |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Meiqin Wang, Lingyu Wang, Ningning Li, Fengdong Sun |
Research on the Immune Microenvironment and Key Genes of Colorectal Cancer based on Transcriptome Data Mining. |
ICCMS |
2023 |
DBLP DOI BibTeX RDF |
|
16 | Yiran Shan, Qian Zhang 0099, Wenbo Guo 0010, Yanhong Wu, Yuxin Miao, Hongyi Xin, Qiuyu Lian, Jin Gu |
TIST: Transcriptome and Histopathological Image Integrative Analysis for Spatial Transcriptomics. |
Genom. Proteom. Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
16 | Jin Zhao 0005, Haodi Feng, Daming Zhu, Yu Lin 0001 |
MultiTrans: An Algorithm for Path Extraction Through Mixed Integer Linear Programming for Transcriptome Assembly. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
16 | Shutao Chen, Lin Zhang 0015, Lin Lu, Jia Meng, Hui Liu 0024 |
FBCwPlaid: A Functional Biclustering Analysis of Epi-Transcriptome Profiling Data Via a Weighted Plaid Model. |
IEEE ACM Trans. Comput. Biol. Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
16 | Laura Puente-Santamaria, Lucia Sanchez-Gonzalez, Ricardo Ramos-Ruiz, Luis del Peso |
Hypoxia classifier for transcriptome datasets. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
16 | Eskandar Taghizadeh, Sahel Heydarheydari, Alihossein Saberi, Shabnam JafarpoorNesheli, Seyed Masoud Rezaeijo |
Breast cancer prediction with transcriptome profiling using feature selection and machine learning methods. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
16 | Mariia Bilous, Loc Tran, Chiara Cianciaruso, Aurélie Gabriel, Hugo Michel, Santiago J. Carmona, Mikael J. Pittet, David Gfeller |
Metacells untangle large and complex single-cell transcriptome networks. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
16 | Xuemin Dong, Shanshan Dong, Shengkai Pan, Xiangjiang Zhan |
RNA-combine: a toolkit for comprehensive analyses on transcriptome data from different sequencing platforms. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
16 | Yusuf Khan, Daniel Hammarström, Stian Ellefsen, Rafi Ahmad |
Normalization of gene expression data revisited: the three viewpoints of the transcriptome in human skeletal muscle undergoing load-induced hypertrophy and why they matter. |
BMC Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
16 | Federica Conte, Pasquale Sibilio, Giulia Fiscon, Paola Paci |
A Transcriptome- and Interactome-Based Analysis Identifies Repurposable Drugs for Human Breast Cancer Subtypes. |
Symmetry |
2022 |
DBLP DOI BibTeX RDF |
|
16 | Junliang Yin, Xiaowen Han, Yongxing Zhu, Zhengwu Fang, Derong Gao, Dongfang Ma |
Transcriptome Profiles of Circular RNAs in Common Wheat during Fusarium Head Blight Disease. |
Data |
2022 |
DBLP DOI BibTeX RDF |
|
16 | Xuhua Yan, Ruiqing Zheng, Min Li 0007 |
GLOBE: a contrastive learning-based framework for integrating single-cell transcriptome datasets. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
16 | Venket Raghavan, Louis Kraft, Fantin Mesny, Linda Rigerte |
A simple guide to de novo transcriptome assembly and annotation. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
16 | Jiacheng Leng, Ling-Yun Wu |
Interaction-based transcriptome analysis via differential network inference. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
16 | Peng Li 0004, Haoran Zhang, Wuxia Zhang, Yuanyuan Zhang, Lingmin Zhan, Ning Wang, Caiping Chen, Bangze Fu, Jinzhong Zhao, Xuezhong Zhou, Shuzhen Guo, Jianxin Chen |
TMNP: a transcriptome-based multi-scale network pharmacology platform for herbal medicine. |
Briefings Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
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