Search results for "transcriptome"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
83	Roberto T. Arrial, Roberto C. Togawa, Marcelo M. Brigido	Outlining a Strategy for Screening Non-coding RNAs on a Transcriptome Through Support Vector Machines.	BSB	2007	DBLP DOI BibTeX RDF	ncRNA, Paracoccidioides brasiliensis, machine learning, Support Vector Machines, non-coding RNA, transcriptome
48	Judith Zimmermann, Zsuzsanna Lipták, Scott Hazelhurst	A Method for Evaluating the Quality of String Dissimilarity Measures and Clustering Algorithms for EST Clustering.	BIBE	2004	DBLP DOI BibTeX RDF	string similarity and dissimilarity measures, EST clustering, benchmarks, simulated data, transcriptome
46	Zeynep H. Gümüs, Fernando Siso-Nadal, Ada Gjrezi, Paul McDonagh, Iya Khalil, Paraskevi Giannakakou, Harel Weinstein	Quantification and Analysis of Combination Drug Synergy in High-Throughput Transcriptome Studies.	BIBE	2010	DBLP DOI BibTeX RDF	combination index, drug synergy, reverse engineering, ovarian cancer, transcriptome
37	Thiago M. Venancio, Ricardo DeMarco, Katia C. P. Oliveira, Ana Carolina Quirino Simoes, Aline Maria da Silva, Sergio Verjovski-Almeida	Genomics and Gene Expression Management Tools for the Schistosoma Mansoni cDNA Microarray Project.	BSB	2005	DBLP DOI BibTeX RDF
37	Akira Sato, Noriyuki Morita, Tetsushi Sadakata, Fumio Yoshikawa, Yoko Shiraishi-Yamaguchi, JinHong Huang, Satoshi Shoji, Mineko Tomomura, Yumi Sato, Emiko Suga, Yukiko Sekine, Aiko Kitamura, Yasuyuki Shibata, Teiichi Furuichi	Deciphering the Genetic Blueprint of Cerebellar Development by the Gene Expression Profiling Informatics.	ICONIP	2004	DBLP DOI BibTeX RDF
35	Vincent Lacroix, Michael Sammeth, Roderic Guigó, Anne Bergeron	Exact Transcriptome Reconstruction from Short Sequence Reads.	WABI	2008	DBLP DOI BibTeX RDF
35	Doron Lipson, Peter Webb, Zohar Yakhini	Designing Specific Oligonucleotide Probes for the Entire S. cerevisiae Transcriptome.	WABI	2002	DBLP DOI BibTeX RDF
33	Yunfeng Wang	Transcriptome and genome analysis based on alignment-free protocols. (L'analyse du génome et du transcriptome par des méthodes sans référence).		2021	RDF
33	Xinxia Peng, Jean Thierry-Mieg, Danielle Thierry-Mieg, Andrew Nishida, Lenore Pipes, Marjan Bozinoski, Matthew J. Thomas, Sara Kelly, Jeffrey M. Weiss, Muthuswamy Raveendran, Donna M. Muzny, Richard A. Gibbs, Jeffrey Rogers, Gary P. Schroth, Michael G. Katze, Christopher E. Mason	Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR).	Nucleic Acids Res.	2015	DBLP DOI BibTeX RDF
33	Jia Li 0007	Identifier les variations conduisant au cancer dans le génome non codant et du transcriptome. (Identifying cancer driver variations in the non-coding genome and transcriptome).		2015	RDF
33	Bogdan Mirauta	Transcriptome analysis from high-throughput sequencing count data. (Etude du transcriptome à partir de données de comptages issues de séquençage haut débit).		2014	RDF
33	Isaac S. Kohane, Vladimir I. Valtchinov	Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome.	Bioinform.	2012	DBLP DOI BibTeX RDF
33	Isaac S. Kohane, Vladimir I. Valtchinov	Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome.	Bioinform.	2012	DBLP DOI BibTeX RDF
33	Khaled Khelif	Web sémantique et Mémoire d expériences sur l analyse du transcriptome. (Semantic web and experiments memory for the transcriptome analysis).		2006	RDF
29	Khaled Khelif, Rose Dieng-Kuntz, Pascal Barbry	MEAT: an experiment memory for interpreting DNA microarray analyses.	K-CAP	2005	DBLP DOI BibTeX RDF	corporate semantic web, knowledge management, NLP, DNA microarray, annotation tool, transcriptome
18	Doulaye Dembélé	Microarray Data Analysis Using Fuzzy Clustering Algorithms.	Fuzzy Systems in Bioinformatics and Computational Biology	2009	DBLP DOI BibTeX RDF
18	Salih Tuna, Mahesan Niranjan	Cross-Platform Analysis with Binarized Gene Expression Data.	PRIB	2009	DBLP DOI BibTeX RDF	Cross-platform analysis, binary gene expression, classification
18	Tulio C. Silva, Pedro A. Berger, Roberto T. Arrial, Roberto C. Togawa, Marcelo M. Brigido, Maria Emília M. T. Walter	SOM-PORTRAIT: Identifying Non-coding RNAs Using Self-Organizing Maps.	BSB	2009	DBLP DOI BibTeX RDF
18	Sujimarn Suwannaroj, Mahesan Niranjan	Enhancing Automatic Construction of Gene Subnetworks by Integrating Multiple Sources of Information.	J. Signal Process. Syst.	2008	DBLP DOI BibTeX RDF	bioinformatics, microarray analysis, literature mining
18	Miki Hirabayashi, Hirotada Ohashi, Tai Kubo	Experimental analysis of the basic idea on the transcription-based diagnostic automata controlled by programmed molecules.	Nat. Comput.	2008	DBLP DOI BibTeX RDF	Nucleic acid detection systems, Molecular programming, Autonomous diagnostic devices, Molecular circuits, DNA computing, Biomolecular computing
18	Derek Greene, Kenneth Bryan, Padraig Cunningham	Parallel integration of heterogeneous genome-wide data sources.	BIBE	2008	DBLP DOI BibTeX RDF
18	Juan M. Corchado, Juan Francisco de Paz	Using CBR Systems for Leukemia Classification.	HAIS	2008	DBLP DOI BibTeX RDF	dendogram, leukemia classification, data mining, Case-based Reasoning
18	Miki Hirabayashi, Hirotada Ohashi, Tai Kubo	Experimental Validation of the Transcription-Based Diagnostic Automata with Quantitative Control by Programmed Molecules.	DNA	2007	DBLP DOI BibTeX RDF	nucleic acid detection systems, molecular programming, autonomous diagnostic devices, molecular circuits, DNA computing, Biomolecular computing
18	Angelica Lindlöf, Marcus Bräutigam, Aakash Chawade, Björn Olsson, Olof Olsson	Identification of Cold-Induced Genes in Cereal Crops and Arabidopsis Through Comparative Analysis of Multiple EST Sets.	BIRD	2007	DBLP DOI BibTeX RDF
18	Magnólia A. Campos, Flávia B. Silva, Marilia S. Silva, Érika E. V. S. Albuquerque, Alexandre M. do Amaral, Cristiane C. Teixeira, Ângela Mehta, Maria Fátima G. Sá	Identification of the Putative Class 3 R Genes in Coffea arabica from CafEST Database.	BSB	2007	DBLP DOI BibTeX RDF	coffee tree, plant resistance, NBS, LRR, TIR
18	Márcia A. Inda, Adam Belloum, Marco Roos, Dmitry Vasunin, Cees T. A. M. de Laat, Louis O. Hertzberger, Timo M. Breit	Interactive Workflows in a Virtual Laboratory for e-Bioscience: The SigWin-Detector Tool for Gene Expression Analysis.	e-Science	2006	DBLP DOI BibTeX RDF
18	Shibin Qiu, Cundong Yang, Terran Lane	Efficient Target Detection for RNA Interference.	GPC	2006	DBLP DOI BibTeX RDF
18	Hans A. Kestler, Wolfgang Lindner 0002, André Müller	Learning and Feature Selection Using the Set Covering Machine with Data-Dependent Rays on Gene Expression Profiles.	ANNPR	2006	DBLP DOI BibTeX RDF
18	Shibin Qiu, Terran Lane	Phase Transitions in Gene Knockdown Networks of Transitive RNAi.	International Conference on Computational Science (2)	2006	DBLP DOI BibTeX RDF
18	Manuel Middendorf, Anshul Kundaje, Mihir Shah, Yoav Freund, Chris Wiggins 0001, Christina S. Leslie	Motif Discovery Through Predictive Modeling of Gene Regulation.	RECOMB	2005	DBLP DOI BibTeX RDF
18	Mathew J. Palakal, Sven Rahmann, Birong Liao	Editorial message: special track on bioinformatics.	SAC	2005	DBLP DOI BibTeX RDF
18	Emilie Guérin, Gwenaëlle Marquet, Anita Burgun, Olivier Loréal, Laure Berti-Équille, Ulf Leser, Fouzia Moussouni	Integrating and Warehousing Liver Gene Expression Data and Related Biomedical Resources in GEDAW.	DILS	2005	DBLP DOI BibTeX RDF
18	Rainer Malik, Arno Siebes	CONAN: An Integrative System for Biomedical Literature Mining.	EPIA	2005	DBLP DOI BibTeX RDF
18	Maurício de Alvarenga Mudado, Estevam Bravo-Neto, José Miguel Ortega	Tests of Automatic Annotation Using KOG Proteins and ESTs from 4 Eukariotic Organisms.	BSB	2005	DBLP DOI BibTeX RDF
18	Fang-Rong Hsu, Hwan-You Chang, Yaw-Ling Lin, Yin-Te Tsai, Hui-Ling Peng, Ying Tsong Chen, Che Feng Chen, Chia Yang Cheng, Chia-Hung Liu, Min Yao Shih	Genome-Wide Alternative Splicing Events Detection through Analysis of Large Scale ESTs.	BIBE	2004	DBLP DOI BibTeX RDF
18	Catherine J. Hack, Jesús A. López	An Exploration of Some Factors Affecting the Correlation of mRNA and Proteomic Data.	KELSI	2004	DBLP DOI BibTeX RDF
18	Marc Vidal	Toward a proteome atlas for C. Elegans.	RECOMB	2002	DBLP DOI BibTeX RDF
16	Priyadarshana Ajithkumar, Gregory Gimenez, Peter A. Stockwell, Suzan Almomani, Sarah A. Bowden, Anna L. Leichter, Antonio Ahn, Sharon Pattison, Sebastian Schmeier, Frank A. Frizelle, Michael R. Eccles, Rachel V. Purcell, Euan J. Rodger, Aniruddha Chatterjee	DNA Methylome and Transcriptome Maps of Primary Colorectal Cancer and Matched Liver Metastasis.	Data	2024	DBLP DOI BibTeX RDF
16	Musu Yuan, Hui Wan, Zihao Wang, Qirui Guo, Minghua Deng	SPANN: annotating single-cell resolution spatial transcriptome data with scRNA-seq data.	Briefings Bioinform.	2024	DBLP DOI BibTeX RDF
16	Darawan Rinchai, Tobias Brummaier, Alexandra A. Marr, Tanwir Habib, Mohammed Toufiq, Tomoshigue Kino, Francois Nosten, Souhaila Al Khodor, Annalisa Terranegra, Rose McGready, Basirudeen Syed Ahamed Kabeer, Damien Chaussabel	A data browsing application for accessing gene and module-level blood transcriptome profiles of healthy pregnant women from high- and low-resource settings.	Database J. Biol. Databases Curation	2024	DBLP DOI BibTeX RDF
16	Yuanyuan Luo, Lerong Liu, Cheng Zhang	Identification and analysis of diverse cell death patterns in diabetic kidney disease using microarray-based transcriptome profiling and single-nucleus RNA sequencing.	Comput. Biol. Medicine	2024	DBLP DOI BibTeX RDF
16	Lachlan Baer, Karissa Barthelson, John H. Postlethwait, David L. Adelson, Stephen M. Pederson, Michael Lardelli	Differential allelic representation (DAR) identifies candidate eQTLs and improves transcriptome analysis.	PLoS Comput. Biol.	2024	DBLP DOI BibTeX RDF
16	Keigo Masuda, Yoshiaki Sota, Hideo Matsuda	Accurate Detection of Fusion Genes in Long-Read Transcriptome Datasets from Multiple Cancer Cell Lines.	ICBBB	2024	DBLP DOI BibTeX RDF
16	Pratheeba Jeyananthan	SARS-CoV-2 Diagnosis Using Transcriptome Data: A Machine Learning Approach.	SN Comput. Sci.	2023	DBLP DOI BibTeX RDF
16	Zidong Liu, Xiaoxu Chen, Pengfei Zhang, Fuyuan Li, Lingkai Zhang, Xueliang Li 0013, Tao Huang, Yi Zheng, Taiyong Yu, Tao Zhang, Wenxian Zeng, Hongzhao Lu, Yinghua Lv	Transcriptome-wide Dynamics of m6A mRNA Methylation During Porcine Spermatogenesis.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
16	Shutao Chen, Lin Zhang 0015, Xiangzhi Chen, Hui Liu 0024	FGFICA: Independent Component Analysis of Fusion Genomic Features for Mining Epi-Transcriptome Profiling Data.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
16	Timothy R. Fallon, Tereza Calounová, Martin Mokrejs, Jing-Ke Weng, Tomás Pluskal	transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
16	Roohallah Mahdi-Esferizi, Behnaz Haji Molla Hoseyni, Amir Mehrpanah, Yazdan Golzade, Ali Najafi, Fatemeh Elahian, Amin Zadeh Shirazi, Guillermo A. Gomez, Shahram Tahmasebian	DeeP4med: deep learning for P4 medicine to predict normal and cancer transcriptome in multiple human tissues.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
16	Ricardo R. Pavan, Fabiola Diniz, Samir El-Dahr, Giovane G. Tortelote	Gene length is a pivotal feature to explain disparities in transcript capture between single transcriptome techniques.	Frontiers Bioinform.	2023	DBLP DOI BibTeX RDF
16	Muhammad Adrian, Roedhy Poerwanto, Eiichi Inoue, Deden Derajat Matra	Transcriptome Dataset of Strawberry (Fragaria × ananassa Duch.) Leaves Using Oxford Nanopore Sequencing under LED Irradiation and Application of Methyl Jasmonate and Methyl Salicylate Hormones Treatment.	Data	2023	DBLP DOI BibTeX RDF
16	Karel K. M. Koudijs, Stefan Böhringer, Henk-Jan Guchelaar	Validation of transcriptome signature reversion for drug repurposing in oncology.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
16	Weixu Wang, Xiaolan Zhou, Jing Wang, Jun Yao, Haimei Wen, Yi Wang, Mingwan Sun, Chao Zhang, Wei Tao, Jiahua Zou, Ting Ni	Approximate estimation of cell-type resolution transcriptome in bulk tissue through matrix completion.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
16	Guoxing Cai, Wenyi Zhao, Zhan Zhou, Xun Gu	MATTE: a pipeline of transcriptome module alignment for anti-noise phenotype-gene-related analysis.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
16	Pablo Acera Mateos, You Zhou, Kathi Zarnack, Eduardo Eyras	Concepts and methods for transcriptome-wide prediction of chemical messenger RNA modifications with machine learning.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
16	Musun Park, Su-Jin Baek, Sang-Min Park, Jin-Mu Yi, Seongwon Cha	Comparative study of the mechanism of natural compounds with similar structures using docking and transcriptome data for improving in silico herbal medicine experimentations.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
16		Correction to: kTWAS: integrating kernel machine with transcriptome-wide association studies improves statistical power and reveals novel genes.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
16	Sheng Hu Qian, Meng-Wei Shi, Dan-Yang Wang, Justin M. Fear, Lu Chen, Yi-Xuan Tu, Hong-Shan Liu, Yuan Zhang, Shuai-Jie Zhang, Shan-Shan Yu, Brian Oliver, Zhen-Xia Chen	Integrating massive RNA-seq data to elucidate transcriptome dynamics in Drosophila melanogaster.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
16	Walter Arancio, Nicolina Sciaraffa, Claudia Coronnello	MBS: a genome browser annotation track for high-confident microRNA binding sites in whole human transcriptome.	Database J. Biol. Databases Curation	2023	DBLP DOI BibTeX RDF
16	Haopeng Yu, Yiman Qi, Bibo Yang, Xiaofei Yang, Yiliang Ding	G4Atlas: a comprehensive transcriptome-wide G-quadruplex database.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
16	Xiaoying Shi, Zhiguang Yu, Pengfei Ren, Xin Dong, Xuanxin Ding, Jiaming Song, Jing Zhang, Taiwen Li, Chenfei Wang	HUSCH: an integrated single-cell transcriptome atlas for human tissue gene expression visualization and analyses.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
16	Lu Pan, Shaobo Shan, Roman Tremmel, Weiyuan Li, Zehuan Liao, Hangyu Shi, Qishuang Chen, Xiaolu Zhang, Xuexin Li	HTCA: a database with an in-depth characterization of the single-cell human transcriptome.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
16	Mingming Lu, Yadong Zhang, Fengchun Yang, Jialin Mai, Qianwen Gao, Xiaowei Xu, Hongyu Kang, Li Hou, Yunfei Shang, Qiheng Qain, Jie Liu, Meiye Jiang, Hao Zhang, Congfan Bu, Jinyue Wang, Zhewen Zhang, Zaichao Zhang, Jingyao Zeng, Jiao Li, Jing-Fa Xiao	TWAS Atlas: a curated knowledgebase of transcriptome-wide association studies.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
16	Ya Han, Yuting Wang, Xin Dong, Dongqing Sun, Zhaoyang Liu, Jiali Yue, Haiyun Wang, Taiwen Li, Chenfei Wang	TISCH2: expanded datasets and new tools for single-cell transcriptome analyses of the tumor microenvironment.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
16	Alexander J. Petri, Kristoffer Sahlin	isONform: reference-free transcriptome reconstruction from Oxford Nanopore data.	Bioinform.	2023	DBLP DOI BibTeX RDF
16	Xiang Cheng, Md Amanullah, Weigang Liu, Yi Liu, Xiaoqing Pan, Honghe Zhang, Haiming Xu, Pengyuan Liu 0003, Yan Lu	WMDS.net: a network control framework for identifying key players in transcriptome programs.	Bioinform.	2023	DBLP DOI BibTeX RDF
16	Xinran Wang, Zeyun Lu, Arjun Bhattacharya, Bogdan Pasaniuc, Nicholas Mancuso	twas_sim, a Python-based tool for simulation and power analysis of transcriptome-wide association analysis.	Bioinform.	2023	DBLP DOI BibTeX RDF
16	Hongyan Du, Guo-Wei Wei 0001, Tingjun Hou	Multiscale Topology in Interactomic Network: From Transcriptome to Antiaddiction Drug Repurposing.	CoRR	2023	DBLP DOI BibTeX RDF
16	Mothe Rajesh, Sheshikala Martha	Analysis of transcriptome of single-cell RNA sequencing data using machine learning.	Soft Comput.	2023	DBLP DOI BibTeX RDF
16	Peiying Huang, Li Yan, Zhishang Li, Shuai Zhao, Yuchao Feng, Jing Zeng, Li Chen, Afang Huang, Yan Chen, Sisi Lei, Xiaoyan Huang, Yi Deng, Dan Xie, Hansu Guan, Weihang Peng, Liyuan Yu, Bojun Chen	Potential shared gene signatures and molecular mechanisms between atherosclerosis and depression: Evidence from transcriptome data.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
16	Chunbao Xie, Ling Zhong, Jiangrong Luo, Ji Luo, Yingmiao Wu, Shuai Zheng, Lingxi Jiang, Jianbo Zhang, Yi Shi	Identification of mutation gene prognostic biomarker in multiple myeloma through gene panel exome sequencing and transcriptome analysis in Chinese population.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
16	Debin Cheng, Zhao Zhang, Zhenzhou Mi, Weidong Tao, Dong Liu, Jun Fu, Hongbin Fan	Deciphering the heterogeneity and immunosuppressive function of regulatory T cells in osteosarcoma using single-cell RNA transcriptome.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
16	Xiang Li, Mingzhi Zheng, Jue Hu, Yuanxiao Yang, Linhuizi Lu, Qinqin Zhao, Xiaohui Fan	Transcriptome, network analysis, and molecular docking approaches to elucidate the modes of action of Astragaloside IV against myocardial infarction with mitochondrial energy metabolism network-targeted regulation.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
16	Onat Kadioglu, Faranak Bahramimehr, Mona Dawood, Nuha Mahmoud, Mohamed Elbadawi, Xiaohua Lu, Yagmur Bülbül, Jana Agnieszka Schulz, Lisa Krämer, Marie-Kathrin Urschel, Zoe Künzli, Leila Abdulrahman, Fadwa Aboumaachar, Lajien Kadalo, Le Van Nguyen, Sara Shaidaei, Nawal Thaher, Kathrin Walter, Karolin Christiane Besler, Andreas Spuller, Markus Munder, Henry Johannes Greten, Thomas Efferth	A drug repurposing approach for individualized cancer therapy based on transcriptome sequencing and virtual drug screening.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
16	Tongtong Ren, Shan Huang, Qiaoming Liu, Guohua Wang	scWECTA: A weighted ensemble classification framework for cell type assignment based on single cell transcriptome.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
16	Zihao Zhao, Qianqian Yan, Li Fang, Guangpu Li, Yong Liu, Jia Li, Shaokang Pan, Sijie Zhou, Jiayu Duan, Dongwei Liu, Zhangsuo Liu	Identification of urinary extracellular vesicles differentially expressed RNAs in diabetic nephropathy via whole-transcriptome integrated analysis.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
16	Lili Dong, Jianan Wang, Guohua Wang	ASAS-EGB: A statistical framework for estimating allele-specific alternative splicing events using transcriptome data.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
16	Md. Ali Hossain, Tania Akter Asa, Md Rabiul Auwul, Md. Aktaruzzaman, Md. Mahfizur Rahman, M. Zahidur Rahman, Mohammad Ali Moni	The pathogenetic influence of smoking on SARS-CoV-2 infection: Integrative transcriptome and regulomics analysis of lung epithelial cells.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
16	Yunkun Qu, Yingguang Wang, Shanxi Wang, Xiaojun Yu, Yi He, Rui Lu, Sheng Chen, Cheng Meng, Hanqing Xu, Wenbin Pei, Bowei Ni, Rui Zhang, Xiaojian Huang, Hongbo You	A comprehensive analysis of single-cell RNA transcriptome reveals unique SPP1+ chondrocytes in human osteoarthritis.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
16	Dong Zhang, Rui Sun, Chenyu Di, Lin Li, Faming Zhao, Yu Han, Wenjie Zhang	Microdissection of cancer-associated fibroblast infiltration subtypes unveils the secreted SERPINE2 contributing to immunosuppressive microenvironment and immuotherapeutic resistance in gastric cancer: A large-scale study integrating bulk and single-cell transcriptome profiling.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
16	Cristiano Guttà, Christoph Morhard, Markus Rehm 0001	Applying a GAN-based classifier to improve transcriptome-based prognostication in breast cancer.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
16	Xiaoshu Zhu, Liyuan Pang, Xiaojun Ding, Wei Lan, Shuang Meng, Xiaoqing Peng	A Gene Correlation Measurement Method for Spatial Transcriptome Data Based on Partitioning and Distribution.	J. Comput. Biol.	2023	DBLP DOI BibTeX RDF
16	Hikari Okada, Riei Tsurumi, Miu Awaki, Shuichi Kaneko	Identifying New Physiological Functions of Peretinoin from RNA Transcriptome Analysis.	SoMeT	2023	DBLP DOI BibTeX RDF
16	Shizheng Qiu, Yadong Wang, Ying Zhang, Yang Hu 0008	Identification of risk genes and biological pathways influencing myopia via transcriptome association study and biomedical ontology methods.	BIBM	2023	DBLP DOI BibTeX RDF
16	Yunyun Su, Feifei Cui, Shiyu Yan, Quan Zou 0001, Chen Cao, Zilong Zhang	Human-Spa: An Online Platform Based on Spatial Transcriptome Data for Diseases of Human Systems.	BIBM	2023	DBLP DOI BibTeX RDF
16	Weiguo Li, Junchi Ma, Cuiyuan Li, Ting Yu, Xuefeng Cui	Using Deep Learning to Classify Full-Length Transcriptome Sequences.	BIBM	2023	DBLP DOI BibTeX RDF
16	Meiqin Wang, Lingyu Wang, Ningning Li, Fengdong Sun	Research on the Immune Microenvironment and Key Genes of Colorectal Cancer based on Transcriptome Data Mining.	ICCMS	2023	DBLP DOI BibTeX RDF
16	Yiran Shan, Qian Zhang 0099, Wenbo Guo 0010, Yanhong Wu, Yuxin Miao, Hongyi Xin, Qiuyu Lian, Jin Gu	TIST: Transcriptome and Histopathological Image Integrative Analysis for Spatial Transcriptomics.	Genom. Proteom. Bioinform.	2022	DBLP DOI BibTeX RDF
16	Jin Zhao 0005, Haodi Feng, Daming Zhu, Yu Lin 0001	MultiTrans: An Algorithm for Path Extraction Through Mixed Integer Linear Programming for Transcriptome Assembly.	IEEE ACM Trans. Comput. Biol. Bioinform.	2022	DBLP DOI BibTeX RDF
16	Shutao Chen, Lin Zhang 0015, Lin Lu, Jia Meng, Hui Liu 0024	FBCwPlaid: A Functional Biclustering Analysis of Epi-Transcriptome Profiling Data Via a Weighted Plaid Model.	IEEE ACM Trans. Comput. Biol. Bioinform.	2022	DBLP DOI BibTeX RDF
16	Laura Puente-Santamaria, Lucia Sanchez-Gonzalez, Ricardo Ramos-Ruiz, Luis del Peso	Hypoxia classifier for transcriptome datasets.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
16	Eskandar Taghizadeh, Sahel Heydarheydari, Alihossein Saberi, Shabnam JafarpoorNesheli, Seyed Masoud Rezaeijo	Breast cancer prediction with transcriptome profiling using feature selection and machine learning methods.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
16	Mariia Bilous, Loc Tran, Chiara Cianciaruso, Aurélie Gabriel, Hugo Michel, Santiago J. Carmona, Mikael J. Pittet, David Gfeller	Metacells untangle large and complex single-cell transcriptome networks.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
16	Xuemin Dong, Shanshan Dong, Shengkai Pan, Xiangjiang Zhan	RNA-combine: a toolkit for comprehensive analyses on transcriptome data from different sequencing platforms.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
16	Yusuf Khan, Daniel Hammarström, Stian Ellefsen, Rafi Ahmad	Normalization of gene expression data revisited: the three viewpoints of the transcriptome in human skeletal muscle undergoing load-induced hypertrophy and why they matter.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
16	Federica Conte, Pasquale Sibilio, Giulia Fiscon, Paola Paci	A Transcriptome- and Interactome-Based Analysis Identifies Repurposable Drugs for Human Breast Cancer Subtypes.	Symmetry	2022	DBLP DOI BibTeX RDF
16	Junliang Yin, Xiaowen Han, Yongxing Zhu, Zhengwu Fang, Derong Gao, Dongfang Ma	Transcriptome Profiles of Circular RNAs in Common Wheat during Fusarium Head Blight Disease.	Data	2022	DBLP DOI BibTeX RDF
16	Xuhua Yan, Ruiqing Zheng, Min Li 0007	GLOBE: a contrastive learning-based framework for integrating single-cell transcriptome datasets.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
16	Venket Raghavan, Louis Kraft, Fantin Mesny, Linda Rigerte	A simple guide to de novo transcriptome assembly and annotation.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
16	Jiacheng Leng, Ling-Yun Wu	Interaction-based transcriptome analysis via differential network inference.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
16	Peng Li 0004, Haoran Zhang, Wuxia Zhang, Yuanyuan Zhang, Lingmin Zhan, Ning Wang, Caiping Chen, Bangze Fu, Jinzhong Zhao, Xuezhong Zhou, Shuzhen Guo, Jianxin Chen	TMNP: a transcriptome-based multi-scale network pharmacology platform for herbal medicine.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF