Search results for "transcriptomics"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
45	Giovani Rubert Librelotto, José Carlos Merino Mombach, Marialva Sinigaglia, Éder Simão, Heleno Borges Cabral, Mauro A. A. Castro	An Ontology to Integrate Transcriptomics and Interatomics Data Involved in Gene Pathways of Genome Stability.	BSB	2009	DBLP DOI BibTeX RDF
39	Kongming Li, Jiahao Li, Yuhao Tao, Fei Wang 0017	stDiff: a diffusion model for imputing spatial transcriptomics through single-cell transcriptomics.	Briefings Bioinform.	2024	DBLP DOI BibTeX RDF
39	Aurora Sucre, Maria Martinez, Alba Garín-Muga	OmicSDK-Transcriptomics: A Web Platform for Transcriptomics Data Analysis.	MIE	2023	DBLP DOI BibTeX RDF
36	Matthew Eavenson, Maciej Janik, Shravya Nimmagadda, John A. Miller 0001, Krys J. Kochut, William S. York	GlycoBrowser: A Tool for Contextual Visualization of Biological Data and Pathways Using Ontologies.	ISBRA	2008	DBLP DOI BibTeX RDF	GlycoBrowser, pathway browsing, metabolic pathway exploration, glycomics, ontology, semantic web, transcriptomics
25	Anil Sorathiya, Tadas Jucikas, Stephanie Piecewicz, Shiladitya Sengupta, Pietro Liò	Searching for Glycomics Role in Stem Cell Development.	CIBB	2008	DBLP DOI BibTeX RDF	Vasculogenesis, zebrafish, complex network, microarray data
25	Marie-Dominique Devignes, Malika Smaïl-Tabbone	Workshop PC Chairs' Message.	WISE Workshops	2007	DBLP DOI BibTeX RDF
25	Cuong To, Jiri Vohradsky	Binary classification using parallel genetic algorithm.	IEEE Congress on Evolutionary Computation	2007	DBLP DOI BibTeX RDF
25	Frank Klawonn, Claudia Choi, Beatrice Benkert, Bernhard Thielen, Richard Münch, Max Schobert, Dietmar Schomburg, Dieter Jahn	A Likelihood Ratio Test for Differential Metabolic Profiles in Multiple Intensity Measurements.	KES (2)	2007	DBLP DOI BibTeX RDF	Pseudomonas aeruginosa, Likelihood ratio test, metabolomics
20	Yan Yang, Md. Zakir Hossain, Eric A. Stone, Shafin Rahman	Spatial transcriptomics analysis of gene expression prediction using exemplar guided graph neural network.	Pattern Recognit.	2024	DBLP DOI BibTeX RDF
20	Daniel Osório 0004, Anna Capasso, S. Gail Eckhardt, Uma Giri, Alexander Somma, Todd M. Pitts, Christopher H. Lieu, Wells A. Messersmith, Stacey M. Bagby, Harinder Singh, Jishnu Das, Nidhi Sahni, S. Stephen Yi, Marieke L. Kuijjer	Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data.	Nat. Comput. Sci.	2024	DBLP DOI BibTeX RDF
20	Lixin Lei, Kaitai Han, Zijun Wang, Chaojing Shi, Zhenghui Wang, Ruoyan Dai, Zhiwei Zhang, Mengqiu Wang, Qianjin Guo	Attention-guided variational graph autoencoders reveal heterogeneity in spatial transcriptomics.	Briefings Bioinform.	2024	DBLP DOI BibTeX RDF
20		Correction to: Adjustment of scRNA-seq data to improve cell-type decomposition of spatial transcriptomics.	Briefings Bioinform.	2024	DBLP DOI BibTeX RDF
20	Youngjune Park, Nils P. Muttray, Anne-Christin Hauschild	Species-agnostic transfer learning for cross-species transcriptomics data integration without gene orthology.	Briefings Bioinform.	2024	DBLP DOI BibTeX RDF
20	Wang Yin, You Wan, Yuan Zhou	SpatialcoGCN: deconvolution and spatial information-aware simulation of spatial transcriptomics data via deep graph co-embedding.	Briefings Bioinform.	2024	DBLP DOI BibTeX RDF
20	Yaofeng Hu, Kai Xiao, Hengyu Yang, Xiaoping Liu 0002, Chuanchao Zhang, Qianqian Shi	Spatially contrastive variational autoencoder for deciphering tissue heterogeneity from spatially resolved transcriptomics.	Briefings Bioinform.	2024	DBLP DOI BibTeX RDF
20	Lisa Buchauer, Shalev Itzkovitz	cellanneal: A user-friendly deconvolution software for transcriptomics data.	J. Open Source Softw.	2024	DBLP DOI BibTeX RDF
20	Diego Mañanes, Inés Rivero-García, Carlos Relaño, Miguel Torres, David Sancho, Daniel Jimenez-Carretero, Carlos Torroja Fungairino, Fátima Sánchez-Cabo	SpatialDDLS: an R package to deconvolute spatial transcriptomics data using neural networks.	Bioinform.	2024	DBLP DOI BibTeX RDF
20	Hongyi Wang 0002, Xiuju Du, Jing Liu, Shuyi Ouyang, Yen-Wei Chen 0001, Lanfen Lin	M2ORT: Many-To-One Regression Transformer for Spatial Transcriptomics Prediction from Histopathology Images.	CoRR	2024	DBLP DOI BibTeX RDF
20	Yan Yang, Md. Zakir Hossain, Xuesong Li, Shafin Rahman, Eric A. Stone	Spatial Transcriptomics Analysis of Zero-shot Gene Expression Prediction.	CoRR	2024	DBLP DOI BibTeX RDF
20	Xiaoyu Li, Wenwen Min, Shunfang Wang, Changmiao Wang, Taosheng Xu	stMCDI: Masked Conditional Diffusion Model with Graph Neural Network for Spatial Transcriptomics Data Imputation.	CoRR	2024	DBLP DOI BibTeX RDF
20	Zelin Zang, Liangyu Li, Yongjie Xu, Chenrui Duan, Kai Wang, Yang You, Yi Sun, Stan Z. Li	Must: Maximizing Latent Capacity of Spatial Transcriptomics Data.	CoRR	2024	DBLP DOI BibTeX RDF
20	Parisa Boodaghi Malidarreh, Biraaj Rout, Mohammad Sadegh Nasr 0001, Priyanshi Borad, Jillur Rahman Saurav, Jai Prakash Veerla, Kelli Fenelon, Theodora Koromila, Jacob M. Luber	Predicting Future States with Spatial Point Processes in Single Molecule Resolution Spatial Transcriptomics.	CoRR	2024	DBLP DOI BibTeX RDF
20	Bonnie V. Dougherty, Connor J. Moore, Kristopher D. Rawls, Matthew L. Jenior, Bryan Chun, Sarbajeet Nagdas, Jeffrey J. Saucerman, Glynis L. Kolling, Anders Wallqvist, Jason A. Papin	Identifying metabolic adaptations characteristic of cardiotoxicity using paired transcriptomics and metabolomics data integrated with a computational model of heart metabolism.	PLoS Comput. Biol.	2024	DBLP DOI BibTeX RDF
20	Sofia Martins, Roberta Coletti, Marta B. Lopes	Disclosing transcriptomics network-based signatures of glioma heterogeneity using sparse methods.	BioData Min.	2023	DBLP DOI BibTeX RDF
20	Shuangsang Fang, Bichao Chen, Yong Zhang 0036, Haixi Sun, Longqi Liu, Shiping Liu, Yuxiang Li, Xun Xu	Computational Approaches and Challenges in Spatial Transcriptomics.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
20	Ran Wang, Guangdun Peng, Patrick P. L. Tam, Naihe Jing	Integration of Computational Analysis and Spatial Transcriptomics in Single-cell Studies.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
20	Tomoya Mori, Toshiro Takase, Kuan-Chun Lan, Junko Yamane, Cantas Alev, Azuma Kimura, Kenji Osafune, Jun K. Yamashita, Tatsuya Akutsu, Hiroaki Kitano, Wataru Fujibuchi	eSPRESSO: topological clustering of single-cell transcriptomics data to reveal informative genes for spatio-temporal architectures of cells.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
20	Xu Chen, Chuang Peng, Yu Chen, Bai Ding, Sulai Liu, Yinghui Song, Yuhang Li, Bo Sun, Ranzhiqiang Yang	A T-cell-related signature for prognostic stratification and immunotherapy response in hepatocellular carcinoma based on transcriptomics and single-cell sequencing.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
20	Layla Hosseini-Gerami, Rosa D. Hernansaiz-Ballesteros, Anika Liu, Howard Broughton, David A. Collier, Andreas Bender	MAVEN: compound mechanism of action analysis and visualisation using transcriptomics and compound structure data in R/Shiny.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
20	Jingxuan Bao, Junhao Wen, Zixuan Wen, Shu Yang, Yuhan Cui, Zhijian Yang, Güray Erus, Andrew J. Saykin, Qi Long, Christos Davatzikos, Li Shen 0001	Brain-wide genome-wide colocalization study for integrating genetics, transcriptomics and brain morphometry in Alzheimer's disease.	NeuroImage	2023	DBLP DOI BibTeX RDF
20	Xiang Zhou, Kangning Dong, Shihua Zhang	Integrating spatial transcriptomics data across different conditions, technologies and developmental stages.	Nat. Comput. Sci.	2023	DBLP DOI BibTeX RDF
20		STAligner enables the integration and alignment of multiple spatial transcriptomics datasets.	Nat. Comput. Sci.	2023	DBLP DOI BibTeX RDF
20	Yanping Zhao, Kui Wang, Gang Hu	DIST: spatial transcriptomics enhancement using deep learning.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Xuejing Shi, Juntong Zhu, Yahui Long, Cheng Liang	Identifying spatial domains of spatially resolved transcriptomics via multi-view graph convolutional networks.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Teng Liu, Zhao-Yu Fang, Xin Li, Li-Ning Zhang, Dong-Sheng Cao 0001, Ming-Zhu Yin	Graph deep learning enabled spatial domains identification for spatial transcriptomics.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Andrew Cheng, Guanyu Hu, Wei Vivian Li	Benchmarking cell-type clustering methods for spatially resolved transcriptomics data.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Yuansong Zeng, Rui Yin, Mai Luo, Jianing Chen, Zixiang Pan, Yutong Lu, Weijiang Yu, Yuedong Yang	Identifying spatial domain by adapting transcriptomics with histology through contrastive learning.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Haochen Li 0003, Tianxing Ma, Minsheng Hao, Wenbo Guo 0010, Jin Gu, Xuegong Zhang, Lei Wei	Decoding functional cell-cell communication events by multi-view graph learning on spatial transcriptomics.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Robert Wang, Ingo Helbig, Andrew C. Edmondson, Lan Lin, Yi Xing	Splicing defects in rare diseases: transcriptomics and machine learning strategies towards genetic diagnosis.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Xiangshang Li, Chunfu Xiao, Juntian Qi, Weizhen Xue, Xinwei Xu, Zelin Mu, Jie Zhang, Chuan-Yun Li, Wanqiu Ding	STellaris: a web server for accurate spatial mapping of single cells based on spatial transcriptomics data.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
20	Zhiwei Fan, Yangyang Luo, Huifen Lu, Tiangang Wang, Yuzhou Feng, Weiling Zhao, Pora Kim, Xiaobo Zhou 0005	SPASCER: spatial transcriptomics annotation at single-cell resolution.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
20	Zixuan Zhang, Haiqi Zhu, Pengtao Dang, Jia Wang, Wennan Chang, Xiao Wang, Norah Alghamdi, Alex Lu, Yong Zang, Wenzhuo Wu, Yijie Wang, Yu Zhang, Sha Cao, Chi Zhang 0021	FLUXestimator: a webserver for predicting metabolic flux and variations using transcriptomics data.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
20	Jia-Juan Tu, Hui-Sheng Li, Hong Yan, Xiao-Fei Zhang	EnDecon: cell type deconvolution of spatially resolved transcriptomics data via ensemble learning.	Bioinform.	2023	DBLP DOI BibTeX RDF
20	Alice Lacan, Michèle Sebag, Blaise Hanczar	GAN-based data augmentation for transcriptomics: survey and comparative assessment.	Bioinform.	2023	DBLP DOI BibTeX RDF
20	Ludvig Larsson, Lovisa Franzén, Patrik L. Ståhl, Joakim Lundeberg	Semla: a versatile toolkit for spatially resolved transcriptomics analysis and visualization.	Bioinform.	2023	DBLP DOI BibTeX RDF
20	Florin C. Walter, Oliver Stegle, Britta Velten	FISHFactor: a probabilistic factor model for spatial transcriptomics data with subcellular resolution.	Bioinform.	2023	DBLP DOI BibTeX RDF
20		Correction to: Clustering spatial transcriptomics data.	Bioinform.	2023	DBLP DOI BibTeX RDF
20	Micha Sam Brickman Raredon, Junchen Yang, Neeharika Kothapalli, Wesley Lewis, Naftali Kaminski, Laura E. Niklason, Yuval Kluger	Comprehensive visualization of cell-cell interactions in single-cell and spatial transcriptomics with NICHES.	Bioinform.	2023	DBLP DOI BibTeX RDF
20	Cassandra Burdziak, Chujun Julia Zhao, Doron Haviv, Direna Alonso-Curbelo, Scott W. Lowe, Dana Pe'er	scKINETICS: inference of regulatory velocity with single-cell transcriptomics data.	Bioinform.	2023	DBLP DOI BibTeX RDF
20	Mihir Bafna, Hechen Li, Xiuwei Zhang	CLARIFY: cell-cell interaction and gene regulatory network refinement from spatially resolved transcriptomics.	Bioinform.	2023	DBLP DOI BibTeX RDF
20	Mohammad Nuwaisir Rahman, Abdullah Al Noman, Abir Mohammad Turza, Mohammed Abid Abrar, Md. Abul Hassan Samee, M. Saifur Rahman	ScribbleDom: using scribble-annotated histology images to identify domains in spatial transcriptomics data.	Bioinform.	2023	DBLP DOI BibTeX RDF
20	Qizhi Li, Xubin Zheng, Jize Xie, Ran Wang, Mengyao Li, Man Hon Wong 0001, Kwong-Sak Leung, Shuai Li 0010, Qingshan Geng, Lixin Cheng	bvnGPS: a generalizable diagnostic model for acute bacterial and viral infection using integrative host transcriptomics and pretrained neural networks.	Bioinform.	2023	DBLP DOI BibTeX RDF
20	Cheng Zhong, Tian Tian, Zhi Wei 0001	Hidden Markov random field models for cell-type assignment of spatially resolved transcriptomics.	Bioinform.	2023	DBLP DOI BibTeX RDF
20	Chen Li, Ting-Fung Chan, Can Yang 0002, Zhixiang Lin	stVAE deconvolves cell-type composition in large-scale cellular resolution spatial transcriptomics.	Bioinform.	2023	DBLP DOI BibTeX RDF
20	Alex J. Lee, Robert Cahill, Reza Abbasi-Asl	Machine Learning for Uncovering Biological Insights in Spatial Transcriptomics Data.	CoRR	2023	DBLP DOI BibTeX RDF
20	Axel Andersson, Andrea Behanova, Carolina Wählby, Filip Malmberg	Cell segmentation of in situ transcriptomics data using signed graph partitioning.	CoRR	2023	DBLP DOI BibTeX RDF
20	Junaid Ahmed, Alhassan S. Yasin	Graph Neural Operators for Classification of Spatial Transcriptomics Data.	CoRR	2023	DBLP DOI BibTeX RDF
20	Md Mamunur Rahaman, Ewan K. A. Millar, Erik Meijering	Breast Cancer Histopathology Image based Gene Expression Prediction using Spatial Transcriptomics data and Deep Learning.	CoRR	2023	DBLP DOI BibTeX RDF
20	Yannis Papanikolaou, Francesco Tuveri, Misa Ogura, Daniel O'Donovan	Transcriptomics-based matching of drugs to diseases with deep learning.	CoRR	2023	DBLP DOI BibTeX RDF
20	Jiarui Ding, Sayem Nazmuz Zaman, P. Y. Chen, David Wang	Latent Space Inference For Spatial Transcriptomics.	CoRR	2023	DBLP DOI BibTeX RDF
20	Jiayuan Chen, Yu Wang, Ruining Deng, Quan Liu, Can Cui 0006, Tianyuan Yao, Yilin Liu, Jianyong Zhong, Agnes B. Fogo, Haichun Yang, Shilin Zhao, Yuankai Huo	Spatial Pathomics Toolkit for Quantitative Analysis of Podocyte Nuclei with Histology and Spatial Transcriptomics Data in Renal Pathology.	CoRR	2023	DBLP DOI BibTeX RDF
20	Kah Keng Wong	Integrated transcriptomics and proteomics data analysis identifies CDH17 as a key cell surface target in colorectal cancer.	Comput. Biol. Chem.	2023	DBLP DOI BibTeX RDF
20	Shu Wang, Xiaocheng Zhou, Yan Kong, Hui Lu 0004	Superresolved spatial transcriptomics transferred from a histological context.	Appl. Intell.	2023	DBLP DOI BibTeX RDF
20	Dibyendu Bikash Seal, Vivek Das, Rajat K. De	CASSL: A cell-type annotation method for single cell transcriptomics data using semi-supervised learning.	Appl. Intell.	2023	DBLP DOI BibTeX RDF
20	Kai Kang, Yijun Wu, Chang Han, Li Wang, Zhile Wang, Ailin Zhao	Homologous recombination deficiency in triple-negative breast cancer: Multi-scale transcriptomics reveals distinct tumor microenvironments and limitations in predicting immunotherapy response.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
20	Tianqi Liu, Yining Liu, Xiangqian Su, Lin Peng, Jiangbo Chen, Pu Xing, Xiaowen Qiao, Zaozao Wang, Jiabo Di, Min Zhao 0006, Beihai Jiang, Hong Qu	Genome-wide transcriptomics and copy number profiling identify patient-specific CNV-lncRNA-mRNA regulatory triplets in colorectal cancer.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
20	Lihong Peng, Xianzhi He, Xinhuai Peng, Zejun Li, Li Zhang	STGNNks: Identifying cell types in spatial transcriptomics data based on graph neural network, denoising auto-encoder, and k-sums clustering.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
20	Raid Halawani, Michael Buchert, Yi-Ping Phoebe Chen	Deep learning exploration of single-cell and spatially resolved cancer transcriptomics to unravel tumour heterogeneity.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
20	Yusuf Baran, Berat Dogan	scMAGS: Marker gene selection from scRNA-seq data for spatial transcriptomics studies.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
20	Shi Yan, Yao Si, Wenyang Zhou, Rui Cheng 0003, Pingping Wang, Di Wang, Wencai Ding, Wanying Shi, Qinghua Jiang, Fan Yang, Lifen Yao	Single-cell transcriptomics reveals the interaction between peripheral CD4+ CTLs and mesencephalic endothelial cells mediated by IFNG in Parkinson's disease.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
20	Malvina Marku, Vera Pancaldi	From time-series transcriptomics to gene regulatory networks: A review on inference methods.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
20	Meng Huang 0003, Jiangtao Ma, Guangqi An, Xiucai Ye	Unravelling cancer subtype-specific driver genes in single-cell transcriptomics data with CSDGI.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
20	Axel Andersson, Andrea Behanova, Carolina Wählby, Filip Malmberg	Cell Segmentation of in situ Transcriptomics Data Using Signed Graph Partitioning.	GbRPR	2023	DBLP DOI BibTeX RDF
20	Assem K. Elsherif, Mohamed Emam, Asmaa M. Abushady, Mariam Gamaleldin, Walid Al-Atabany, Mohamed El-Hadidi	Integrated Analysis of Bulk and Single-Cell Transcriptomics in Cervical Cancer: Insights into BPGM, EGLN3, and SUN1.	BIBE	2023	DBLP DOI BibTeX RDF
20	Yue Cheng, Yanchi Su, Zhuohan Yu, Yanchun Liang, Ka-Chun Wong, Xiangtao Li	Unsupervised Deep Embedded Fusion Representation of Single-Cell Transcriptomics.	AAAI	2023	DBLP DOI BibTeX RDF
20	Dig Vijay Kumar Yarlagadda, Joan Massagué, Christina S. Leslie	Discrete Representation Learning for Modeling Imaging-based Spatial Transcriptomics Data.	ICCV (Workshops)	2023	DBLP DOI BibTeX RDF
20	Wei Peng 0004, Zhihao Zhang, Wei Dai, Xiaodong Fu, Li Liu 0032, Lijun Liu, Ning Yu	A multi-view comparative learning method for spatial transcriptomics data clustering.	BIBM	2023	DBLP DOI BibTeX RDF
20	Cuiyuan Li, Fa Zhang 0001, Kai Hu 0002, Xuefeng Cui	Variational Clustering and Denoising of Spatial Transcriptomics.	BIBM	2023	DBLP DOI BibTeX RDF
20	Shilin Zhang, Qingchen Zhang	ADCL: an adaptive dual contrastive learning framework based on MHGAT and VAE for cell type deconvolution in spatial transcriptomics.	BIBM	2023	DBLP DOI BibTeX RDF
20	Ellie Xi, Lulu Shang, Tutu Hu, Xiang Zhou, Chloe Yu, Yongsheng Bai	Identification of Key Biomarkers Associated with Ductal Breast Cancer in Spatial Transcriptomics Data.	BIBM	2023	DBLP DOI BibTeX RDF
20	Abdullah Karaaslanli, Ziyin Huang, Yijun Guo, Lana X. Garmire, Haodong Liang	STADS: Spatial Transcriptomics to Aid Drug-reposition Recommendation.	BIBM	2023	DBLP DOI BibTeX RDF
20	Diego Troitiño-Jordedo, Lucas Carvalho, David Henriques, Vítor Pereira 0001, Miguel Rocha 0001, Eva Balsa-Canto	A New GIMME-Based Heuristic for Compartmentalised Transcriptomics Data Integration.	PACBB	2023	DBLP DOI BibTeX RDF
20	Yan Yang, Md. Zakir Hossain, Eric A. Stone, Shafin Rahman	Exemplar Guided Deep Neural Network for Spatial Transcriptomics Analysis of Gene Expression Prediction.	WACV	2023	DBLP DOI BibTeX RDF
20	Mena Soliman Asaad Kamel, Amrut Sarangi, Cindy Qin, Het Barot, Pavel Senin, Sergio Villordo, Sunaal Mathew, Albert Pla Planas, Ziv Bar-Joseph	Deep-Learning Based Cell Segmentation and Deconvolution in Spatial Transcriptomics.	BCB	2023	DBLP DOI BibTeX RDF
20	Yiran Shan, Qian Zhang 0099, Wenbo Guo 0010, Yanhong Wu, Yuxin Miao, Hongyi Xin, Qiuyu Lian, Jin Gu	TIST: Transcriptome and Histopathological Image Integrative Analysis for Spatial Transcriptomics.	Genom. Proteom. Bioinform.	2022	DBLP DOI BibTeX RDF
20	Yiru Sheng, R. Ayesha Ali, Andreas Heyland	Comparative transcriptomics analysis pipeline for the meta-analysis of phylogenetically divergent datasets (CoRMAP).	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
20	Marta Moreno, Ricardo Vilaça, Pedro G. Ferreira	Scalable transcriptomics analysis with Dask: applications in data science and machine learning.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
20	Jiayi Dong, Yin Zhang, Fei Wang	scSemiAE: a deep model with semi-supervised learning for single-cell transcriptomics.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
20	Hui Li, Davis J. McCarthy, Heejung Shim, Susan Wei	Trade-off between conservation of biological variation and batch effect removal in deep generative modeling for single-cell transcriptomics.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
20	Raluca Petrican, Alex Fornito, Natalie Jones	Psychological resilience and neurodegenerative risk: A connectomics-transcriptomics investigation in healthy adolescent and middle-aged females.	NeuroImage	2022	DBLP DOI BibTeX RDF
20	Denis Bienroth, Hieu T. Nim, Dimitar Garkov, Karsten Klein 0001, Sabrina Jaeger-Honz, Mirana Ramialison, Falk Schreiber	Spatially resolved transcriptomics in immersive environments.	Vis. Comput. Ind. Biomed. Art	2022	DBLP DOI BibTeX RDF
20	Jiachen Li, Siheng Chen, Xiaoyong Pan, Ye Yuan, Hong-Bin Shen	Cell clustering for spatial transcriptomics data with graph neural networks.	Nat. Comput. Sci.	2022	DBLP DOI BibTeX RDF
20	Xin Zhou	Graphing cell relations in spatial transcriptomics.	Nat. Comput. Sci.	2022	DBLP DOI BibTeX RDF
20	Daniele Mercatelli, Chiara Cabrelle, Pierangelo Veltri, Federico M. Giorgi, Pietro H. Guzzi	Detection of pan-cancer surface protein biomarkers via a network-based approach on transcriptomics data.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
20	Mathew Karikomi, Peijie Zhou, Qing Nie	DURIAN: an integrative deconvolution and imputation method for robust signaling analysis of single-cell transcriptomics data.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
20	Yuansong Zeng, Zhuoyi Wei, Weijiang Yu, Rui Yin, Yuchen Yuan, Bingling Li, Zhonghui Tang, Yutong Lu, Yuedong Yang	Spatial transcriptomics prediction from histology jointly through Transformer and graph neural networks.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
20	Lihong Peng, Feixiang Wang, Zhao Wang, Jingwei Tan, Li Huang, Xiongfei Tian, Guangyi Liu, Liqian Zhou	Cell-cell communication inference and analysis in the tumour microenvironments from single-cell transcriptomics: data resources and computational strategies.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
20	Jiawen Chen, Weifang Liu, Tianyou Luo, Zhentao Yu, Minzhi Jiang, Jia Wen, Gaorav P. Gupta, Paola Giusti, Hongtu Zhu, Yuchen Yang, Yun Li	A comprehensive comparison on cell-type composition inference for spatial transcriptomics data.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
20	Yanglan Gan, Cheng Guo, Wenjing Guo, Guangwei Xu, Guobing Zou	Entropy-based inference of transition states and cellular trajectory for single-cell transcriptomics.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
20	Marie Oestreich, Lisa Holsten, Shobhit Agrawal, Kilian Dahm, Philipp Koch, Han Jin, Matthias Becker 0003, Thomas Ulas	hCoCena: horizontal integration and analysis of transcriptomics datasets.	Bioinform.	2022	DBLP DOI BibTeX RDF